Wall clock time and date at job start Mon Mar 30 2020 07:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00200 * 2 1 4 4 H 1.48494 * 109.47091 * 239.99975 * 3 2 1 5 5 H 1.48499 * 109.46879 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47318 * 119.99721 * 3 2 1 7 7 C 1.37881 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.53488 * 114.20432 * 179.97438 * 9 7 2 11 11 N 1.47062 * 87.98709 * 220.15331 * 10 9 7 12 12 C 1.34784 * 136.05762 * 207.08992 * 11 10 9 13 13 O 1.21279 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47266 * 180.02562 * 14 12 11 16 16 C 1.29443 * 117.96348 * 95.00036 * 15 14 12 17 17 C 1.50067 * 124.07272 * 180.45032 * 16 15 14 18 18 C 1.53025 * 110.14824 * 342.86474 * 17 16 15 19 19 C 1.53388 * 108.43666 * 49.43619 * 18 17 16 20 20 C 1.50065 * 117.95911 * 274.73340 * 15 14 12 21 21 C 1.47061 * 87.88485 * 27.34441 * 11 10 9 22 22 H 0.97000 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.08993 * 113.28502 * 313.06928 * 9 7 2 24 24 H 1.09008 * 113.46718 * 105.37211 * 10 9 7 25 25 H 1.09000 * 113.52489 * 334.94596 * 10 9 7 26 26 H 1.09004 * 109.46932 * 300.00223 * 14 12 11 27 27 H 1.08997 * 109.47392 * 59.99562 * 14 12 11 28 28 H 1.07993 * 117.96380 * 0.46278 * 16 15 14 29 29 H 1.08998 * 109.36104 * 103.07369 * 17 16 15 30 30 H 1.08998 * 109.35649 * 222.65873 * 17 16 15 31 31 H 1.09000 * 109.64174 * 169.12689 * 18 17 16 32 32 H 1.09000 * 109.63823 * 289.75425 * 18 17 16 33 33 H 1.09007 * 109.64148 * 52.25695 * 19 18 17 34 34 H 1.09004 * 109.64027 * 172.66573 * 19 18 17 35 35 H 1.09001 * 109.36115 * 283.10139 * 20 15 14 36 36 H 1.09005 * 109.35803 * 42.68346 * 20 15 14 37 37 H 1.09001 * 113.47097 * 87.44038 * 21 11 10 38 38 H 1.09001 * 113.46791 * 217.88377 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.1487 -3.7442 0.0016 11 7 1.2066 -4.3597 -0.9452 12 6 0.8310 -5.6145 -1.2630 13 8 1.3282 -6.5601 -0.6891 14 6 -0.2068 -5.8425 -2.3317 15 6 -0.4456 -7.3217 -2.4927 16 6 -1.4303 -7.8520 -1.8411 17 6 -1.7849 -9.3093 -1.8929 18 6 -1.1250 -9.9695 -3.1055 19 6 0.3605 -9.5878 -3.1171 20 6 0.4693 -8.0870 -3.4033 21 6 0.8595 -3.0039 -1.3969 22 1 -0.4850 0.8400 0.0004 23 1 0.4438 -2.5300 0.7334 24 1 2.1884 -4.2509 0.9659 25 1 3.1372 -3.5677 -0.4225 26 1 -1.1378 -5.3537 -2.0442 27 1 0.1457 -5.4261 -3.2753 28 1 -2.0344 -7.2056 -1.2218 29 1 -1.4385 -9.7981 -0.9824 30 1 -2.8671 -9.4153 -1.9682 31 1 -1.2246 -11.0525 -3.0324 32 1 -1.6014 -9.6156 -4.0198 33 1 0.8042 -9.8127 -2.1472 34 1 0.8771 -10.1498 -3.8953 35 1 0.1933 -7.8924 -4.4397 36 1 1.4970 -7.7631 -3.2385 37 1 1.5077 -2.6313 -2.1900 38 1 -0.1994 -2.8799 -1.6240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598031784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:48 Heat of formation + Delta-G solvation = -7.998406 kcal Electronic energy + Delta-G solvation = -17886.534256 eV Core-core repulsion = 15115.477410 eV Total energy + Delta-G solvation = -2771.056846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65418 -38.44897 -36.84326 -32.77536 -32.63837 -30.68807 -29.48558 -27.05612 -24.96718 -24.77127 -23.19100 -21.74764 -20.31414 -18.11110 -17.49762 -16.86466 -16.14688 -15.74869 -15.05279 -14.79538 -14.53510 -14.10859 -13.87144 -13.66925 -12.97270 -12.66625 -12.46210 -12.25086 -12.03026 -12.00019 -11.58097 -11.48904 -11.20716 -10.95480 -10.83466 -10.80186 -10.43370 -10.35229 -10.16819 -9.63140 -9.21324 -9.05605 -8.62417 -8.52845 -7.83626 -6.19342 -4.25066 2.34572 3.22842 3.24590 3.30056 3.32263 3.72201 4.32580 4.67857 4.74195 4.91012 5.09070 5.18500 5.24503 5.29168 5.42452 5.55381 5.60851 5.64476 5.81837 5.83309 5.94400 5.96277 6.04482 6.10200 6.19198 6.19724 6.27744 6.33766 6.45119 6.56661 6.65535 6.76527 6.83741 7.15311 7.54490 7.78395 8.17399 8.56858 8.78650 8.81930 9.41784 10.90393 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.055915 B = 0.004001 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.641466 B = 6997.356910 C = 7138.791714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.099 3.901 11 N -0.646 5.646 12 C 0.533 3.467 13 O -0.559 6.559 14 C -0.105 4.105 15 C -0.092 4.092 16 C -0.156 4.156 17 C -0.085 4.085 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.079 4.079 21 C 0.097 3.903 22 H 0.265 0.735 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -12.950 -7.081 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.023 4.023 11 N -0.380 5.380 12 C 0.323 3.677 13 O -0.439 6.439 14 C -0.144 4.144 15 C -0.093 4.093 16 C -0.174 4.174 17 C -0.122 4.122 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.116 4.116 21 C -0.025 4.025 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.862 -13.527 -6.835 15.424 hybrid contribution 0.377 1.133 -0.075 1.197 sum -2.484 -12.394 -6.910 14.406 Atomic orbital electron populations 1.69938 1.06084 1.27254 1.49023 1.25027 0.94864 0.99389 0.94205 0.86589 0.79594 0.82618 0.78843 1.20061 1.21213 1.20035 1.20886 0.92996 0.89609 1.52175 0.91892 1.20379 0.94743 0.91135 0.92159 1.23313 0.94268 0.93160 0.91533 1.50058 1.42554 1.04938 1.40494 1.20028 0.83178 0.81057 0.83438 1.90632 1.57861 1.40871 1.54570 1.20767 0.99578 0.95119 0.98964 1.20315 0.96210 0.93901 0.98866 1.21822 0.99033 0.96550 0.99984 1.20378 1.00024 0.93222 0.98580 1.21603 0.96041 0.99674 0.98365 1.21594 0.96326 0.95572 1.02032 1.20357 0.99112 0.94378 0.97739 1.23650 0.99709 0.77060 1.02109 0.92565 0.91393 0.92601 0.91028 0.88779 0.88926 0.88126 0.91066 0.91461 0.92035 0.91909 0.91479 0.92016 0.91268 0.90975 0.90834 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 13.26 55.43 0.74 -23.31 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -13.21 8.83 -34.44 -0.30 -13.51 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.04 0.83 3.79 -91.12 -0.35 0.48 16 10 C 0.10 2.12 8.17 -8.52 -0.07 2.05 16 11 N -0.65 -13.37 3.69 -185.09 -0.68 -14.06 16 12 C 0.53 10.61 8.07 -10.98 -0.09 10.52 16 13 O -0.56 -12.70 16.81 5.56 0.09 -12.61 16 14 C -0.10 -1.63 5.54 -29.04 -0.16 -1.79 16 15 C -0.09 -1.34 4.33 -100.94 -0.44 -1.78 16 16 C -0.16 -2.14 9.37 -35.90 -0.34 -2.47 16 17 C -0.09 -0.95 6.11 -28.18 -0.17 -1.12 16 18 C -0.12 -1.20 6.01 -26.52 -0.16 -1.36 16 19 C -0.12 -1.33 6.02 -26.44 -0.16 -1.49 16 20 C -0.08 -1.01 5.80 -28.10 -0.16 -1.18 16 21 C 0.10 2.04 8.00 -8.38 -0.07 1.98 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 24 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 25 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 26 H 0.09 1.38 7.79 -51.93 -0.40 0.98 16 27 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.10 1.38 7.74 -52.49 -0.41 0.98 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -28.67 315.58 -8.94 -37.61 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.27 Total: 0.63 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.56 Total: -7.99 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.05 Total: -37.37 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.67 -8.94 -37.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.616 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds