Wall clock time and date at job start Mon Mar 30 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00200 * 2 1 4 4 H 1.48494 * 109.47091 * 239.99975 * 3 2 1 5 5 H 1.48499 * 109.46879 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47318 * 119.99721 * 3 2 1 7 7 C 1.37881 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.53488 * 114.20432 * 179.97438 * 9 7 2 11 11 N 1.47062 * 87.98709 * 220.15331 * 10 9 7 12 12 C 1.34784 * 136.05762 * 207.08992 * 11 10 9 13 13 O 1.21279 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47266 * 180.02562 * 14 12 11 16 16 C 1.29443 * 117.96348 * 95.00036 * 15 14 12 17 17 C 1.50067 * 124.07272 * 180.45032 * 16 15 14 18 18 C 1.53025 * 110.14824 * 342.86474 * 17 16 15 19 19 C 1.53388 * 108.43666 * 49.43619 * 18 17 16 20 20 C 1.50065 * 117.95911 * 274.73340 * 15 14 12 21 21 C 1.47061 * 87.88485 * 27.34441 * 11 10 9 22 22 H 0.97000 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.08993 * 113.28502 * 313.06928 * 9 7 2 24 24 H 1.09008 * 113.46718 * 105.37211 * 10 9 7 25 25 H 1.09000 * 113.52489 * 334.94596 * 10 9 7 26 26 H 1.09004 * 109.46932 * 300.00223 * 14 12 11 27 27 H 1.08997 * 109.47392 * 59.99562 * 14 12 11 28 28 H 1.07993 * 117.96380 * 0.46278 * 16 15 14 29 29 H 1.08998 * 109.36104 * 103.07369 * 17 16 15 30 30 H 1.08998 * 109.35649 * 222.65873 * 17 16 15 31 31 H 1.09000 * 109.64174 * 169.12689 * 18 17 16 32 32 H 1.09000 * 109.63823 * 289.75425 * 18 17 16 33 33 H 1.09007 * 109.64148 * 52.25695 * 19 18 17 34 34 H 1.09004 * 109.64027 * 172.66573 * 19 18 17 35 35 H 1.09001 * 109.36115 * 283.10139 * 20 15 14 36 36 H 1.09005 * 109.35803 * 42.68346 * 20 15 14 37 37 H 1.09001 * 113.47097 * 87.44038 * 21 11 10 38 38 H 1.09001 * 113.46791 * 217.88377 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.1487 -3.7442 0.0016 11 7 1.2066 -4.3597 -0.9452 12 6 0.8310 -5.6145 -1.2630 13 8 1.3282 -6.5601 -0.6891 14 6 -0.2068 -5.8425 -2.3317 15 6 -0.4456 -7.3217 -2.4927 16 6 -1.4303 -7.8520 -1.8411 17 6 -1.7849 -9.3093 -1.8929 18 6 -1.1250 -9.9695 -3.1055 19 6 0.3605 -9.5878 -3.1171 20 6 0.4693 -8.0870 -3.4033 21 6 0.8595 -3.0039 -1.3969 22 1 -0.4850 0.8400 0.0004 23 1 0.4438 -2.5300 0.7334 24 1 2.1884 -4.2509 0.9659 25 1 3.1372 -3.5677 -0.4225 26 1 -1.1378 -5.3537 -2.0442 27 1 0.1457 -5.4261 -3.2753 28 1 -2.0344 -7.2056 -1.2218 29 1 -1.4385 -9.7981 -0.9824 30 1 -2.8671 -9.4153 -1.9682 31 1 -1.2246 -11.0525 -3.0324 32 1 -1.6014 -9.6156 -4.0198 33 1 0.8042 -9.8127 -2.1472 34 1 0.8771 -10.1498 -3.8953 35 1 0.1933 -7.8924 -4.4397 36 1 1.4970 -7.7631 -3.2385 37 1 1.5077 -2.6313 -2.1900 38 1 -0.1994 -2.8799 -1.6240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598031784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:47 Heat of formation + Delta-G solvation = -22.728356 kcal Electronic energy + Delta-G solvation = -17887.172994 eV Core-core repulsion = 15115.477410 eV Total energy + Delta-G solvation = -2771.695585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22853 -39.68261 -38.39688 -34.65444 -33.84060 -31.63350 -31.13983 -28.46720 -26.75909 -26.44424 -24.15391 -22.85333 -21.93793 -19.75469 -18.75624 -18.51276 -17.77541 -17.00140 -16.68931 -16.31160 -16.08193 -15.40807 -15.10400 -14.62918 -14.29652 -14.25561 -13.89836 -13.52978 -13.28459 -13.17328 -13.10547 -13.00416 -12.73535 -12.65313 -12.58217 -12.18027 -11.65756 -11.43614 -11.33839 -11.12171 -11.05015 -10.76735 -10.52898 -9.67934 -9.55931 -8.16792 -6.28288 1.21816 1.49267 1.49944 1.57499 1.64551 2.13830 2.46852 3.13388 3.63763 3.70552 3.78291 4.07052 4.22598 4.24903 4.34175 4.39645 4.43518 4.51386 4.55554 4.66378 4.69440 4.71812 4.74127 4.83734 4.95242 4.99726 5.03280 5.05596 5.09535 5.19065 5.31831 5.47676 5.58521 5.73074 5.80658 6.09401 6.22742 6.80009 6.92269 7.18470 7.41919 8.93017 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.055915 B = 0.004001 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.641466 B = 6997.356910 C = 7138.791714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.022 3.978 10 C 0.103 3.897 11 N -0.649 5.649 12 C 0.529 3.471 13 O -0.590 6.590 14 C -0.097 4.097 15 C -0.112 4.112 16 C -0.157 4.157 17 C -0.088 4.088 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.079 4.079 21 C 0.114 3.886 22 H 0.265 0.735 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -13.492 -8.489 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.003 3.997 10 C -0.019 4.019 11 N -0.383 5.383 12 C 0.321 3.679 13 O -0.472 6.472 14 C -0.137 4.137 15 C -0.112 4.112 16 C -0.175 4.175 17 C -0.125 4.125 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.116 4.116 21 C -0.009 4.009 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.924 -14.078 -8.250 16.578 hybrid contribution 0.387 1.259 0.430 1.385 sum -2.537 -12.820 -7.820 15.229 Atomic orbital electron populations 1.70046 1.07435 1.27970 1.50171 1.25760 0.95570 1.02546 0.93935 0.85593 0.78323 0.78606 0.79040 1.19149 1.21221 1.19761 1.21189 0.93337 0.90518 1.51849 0.91561 1.20266 0.94551 0.91695 0.93173 1.23206 0.94593 0.92184 0.91919 1.50096 1.42474 1.05307 1.40381 1.20834 0.83334 0.80058 0.83706 1.90612 1.59100 1.41592 1.55897 1.20797 0.98291 0.96552 0.98045 1.20463 0.97170 0.93411 1.00182 1.22100 0.98549 0.98039 0.98857 1.20461 1.01406 0.91454 0.99129 1.21601 0.94734 1.00766 0.98086 1.21603 0.97591 0.94768 1.01570 1.20389 0.97488 0.95194 0.98534 1.23396 1.00011 0.76874 1.00605 0.92597 0.94395 0.92961 0.89907 0.87968 0.87022 0.88757 0.91434 0.89541 0.90122 0.90914 0.93540 0.90052 0.89223 0.93007 0.89941 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.10 13.26 21.45 0.28 -49.82 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.53 -27.00 8.83 25.60 0.23 -26.77 16 8 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.02 1.07 3.79 -11.12 -0.04 1.03 16 10 C 0.10 4.42 8.17 83.17 0.68 5.10 16 11 N -0.65 -26.68 3.69 -857.90 -3.16 -29.84 16 12 C 0.53 20.89 8.07 87.66 0.71 21.60 16 13 O -0.59 -26.94 16.81 -3.03 -0.05 -26.99 16 14 C -0.10 -2.93 5.54 29.10 0.16 -2.77 16 15 C -0.11 -3.11 4.33 -15.10 -0.07 -3.18 16 16 C -0.16 -4.13 9.37 27.04 0.25 -3.88 16 17 C -0.09 -1.79 6.11 29.66 0.18 -1.61 16 18 C -0.11 -1.99 6.01 30.73 0.18 -1.81 16 19 C -0.12 -2.46 6.02 30.78 0.19 -2.28 16 20 C -0.08 -1.92 5.80 29.71 0.17 -1.75 16 21 C 0.11 4.73 8.00 83.26 0.67 5.39 16 22 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 23 H 0.04 2.02 8.11 -2.39 -0.02 2.00 16 24 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.08 3.34 8.10 -2.39 -0.02 3.32 16 26 H 0.10 2.90 7.79 -2.38 -0.02 2.88 16 27 H 0.11 2.91 8.11 -2.39 -0.02 2.89 16 28 H 0.09 2.53 7.74 -2.91 -0.02 2.51 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.05 1.15 8.12 -2.38 -0.02 1.13 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -60.74 315.58 3.88 -56.86 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.01 Total: 16.48 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.77 Total: -9.30 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.88 Total: -79.66 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -60.74 3.88 -56.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.127 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds