Wall clock time and date at job start Mon Mar 30 2020 07:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47369 * 275.20021 * 3 2 1 5 5 H 1.48501 * 109.46868 * 35.20168 * 3 2 1 6 6 H 1.48502 * 109.46921 * 155.19668 * 3 2 1 7 7 C 1.38950 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00135 * 341.04500 * 7 2 1 9 9 N 1.37103 * 119.99877 * 160.76804 * 7 2 1 10 10 C 1.34777 * 120.00136 * 313.87712 * 9 7 2 11 11 O 1.21292 * 120.00089 * 4.11611 * 10 9 7 12 12 C 1.50703 * 119.99894 * 184.11392 * 10 9 7 13 13 C 1.54897 * 129.08826 * 298.15760 * 12 10 9 14 14 C 1.57174 * 77.91324 * 180.16248 * 13 12 10 15 15 C 1.54410 * 83.73213 * 42.47322 * 14 13 12 16 16 C 1.54891 * 83.77408 * 317.35417 * 14 13 12 17 17 C 1.46504 * 119.99611 * 133.87872 * 9 7 2 18 18 C 1.54264 * 110.03275 * 57.16821 * 17 9 7 19 19 C 1.54890 * 104.19306 * 217.10576 * 18 17 9 20 20 C 1.54880 * 102.75276 * 37.94087 * 19 18 17 21 21 C 1.53870 * 110.03163 * 299.99978 * 17 9 7 22 22 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 23 23 H 1.09001 * 114.97404 * 291.95272 * 13 12 10 24 24 H 1.08990 * 114.97766 * 67.13157 * 13 12 10 25 25 H 1.09003 * 129.24793 * 179.19529 * 14 13 12 26 26 H 1.08998 * 114.93551 * 205.06536 * 15 14 13 27 27 H 1.08998 * 114.93358 * 70.03116 * 15 14 13 28 28 H 1.09003 * 116.12361 * 290.12686 * 16 14 13 29 29 H 1.08996 * 113.83375 * 154.95668 * 16 14 13 30 30 H 1.09005 * 110.01392 * 178.60986 * 17 9 7 31 31 H 1.09000 * 110.48760 * 335.78153 * 18 17 9 32 32 H 1.08996 * 110.48959 * 98.42716 * 18 17 9 33 33 H 1.09001 * 110.75351 * 279.62523 * 19 18 17 34 34 H 1.09000 * 110.91270 * 156.33237 * 19 18 17 35 35 H 1.08993 * 110.49128 * 203.37685 * 20 19 18 36 36 H 1.09004 * 110.60289 * 80.78952 * 20 19 18 37 37 H 1.09007 * 110.03329 * 238.57118 * 21 17 9 38 38 H 1.08997 * 110.03548 * 359.97438 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3858 2.1099 -1.3943 5 1 1.5048 2.6184 0.8071 6 1 3.5963 1.4109 0.5874 7 6 2.0088 -1.2033 -0.0005 8 1 1.5128 -2.1134 0.3029 9 7 3.3224 -1.2363 -0.3917 10 6 3.7086 -0.5929 -1.5112 11 8 2.9101 0.0766 -2.1320 12 6 5.1325 -0.7053 -1.9918 13 6 6.4393 -0.2665 -1.2853 14 6 6.9789 -0.8572 -2.6381 15 6 5.7843 -0.0951 -3.2516 16 6 5.9381 -1.9728 -2.3711 17 6 4.3064 -1.9709 0.4074 18 6 3.8771 -3.4458 0.5490 19 6 4.2905 -3.8247 1.9928 20 6 3.9719 -2.5352 2.7893 21 6 4.3667 -1.3919 1.8318 22 1 -0.4850 0.8401 0.0004 23 1 6.5645 0.8109 -1.1771 24 1 6.6893 -0.8318 -0.3876 25 1 8.0051 -0.9291 -2.9986 26 1 5.4201 -0.4962 -4.1974 27 1 5.8775 0.9908 -3.2405 28 1 6.1569 -2.6446 -1.5411 29 1 5.5972 -2.4820 -3.2725 30 1 5.2883 -1.9104 -0.0621 31 1 2.7987 -3.5430 0.4231 32 1 4.4042 -4.0677 -0.1744 33 1 5.3546 -4.0560 2.0418 34 1 3.6974 -4.6622 2.3603 35 1 4.5682 -2.4925 3.7007 36 1 2.9093 -2.4839 3.0270 37 1 5.3780 -1.0512 2.0539 38 1 3.6642 -0.5641 1.9284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599537899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:05 Heat of formation + Delta-G solvation = 72.142680 kcal Electronic energy + Delta-G solvation = -19685.016863 eV Core-core repulsion = 16917.435196 eV Total energy + Delta-G solvation = -2767.581668 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68548 -38.65594 -36.85134 -33.50378 -31.80139 -28.15682 -27.22545 -26.22701 -25.46322 -25.34006 -23.31066 -20.44815 -20.21459 -19.14637 -18.30036 -16.94995 -16.09816 -15.34306 -14.76852 -14.33594 -14.11904 -14.10194 -13.67579 -13.31733 -12.96178 -12.70064 -12.07092 -11.67815 -11.33634 -11.23238 -11.12317 -10.97935 -10.90612 -10.79690 -10.61231 -10.51423 -10.21106 -10.14378 -10.00862 -9.88832 -9.78040 -9.68212 -8.52124 -8.41135 -7.48751 -6.15454 -3.93293 3.27956 3.48764 3.65980 3.73273 4.35663 4.46570 4.58166 4.61364 4.74492 4.88651 5.05167 5.10195 5.16285 5.20611 5.40859 5.51188 5.72814 5.79955 5.80117 5.88582 5.97142 6.08130 6.09668 6.11504 6.16131 6.17714 6.19754 6.22080 6.36779 6.38785 6.53233 6.64612 6.78977 6.90741 7.00111 7.90517 8.11131 8.86299 8.98282 9.48697 9.90975 10.90605 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.013672 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.564068 B = 2047.447124 C = 3144.581010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.095 3.905 3 Si 0.900 3.100 4 H -0.259 1.259 5 H -0.307 1.307 6 H -0.277 1.277 7 C -0.341 4.341 8 H 0.095 0.905 9 N -0.451 5.451 10 C 0.506 3.494 11 O -0.540 6.540 12 C -0.143 4.143 13 C -0.119 4.119 14 C -0.150 4.150 15 C -0.101 4.101 16 C -0.109 4.109 17 C 0.122 3.878 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.131 4.131 22 H 0.271 0.729 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.140 0.860 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.093 -4.665 1.124 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.114 4.114 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.236 1.236 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.113 0.887 9 N -0.172 5.172 10 C 0.295 3.705 11 O -0.421 6.421 12 C -0.147 4.147 13 C -0.156 4.156 14 C -0.168 4.168 15 C -0.139 4.139 16 C -0.147 4.147 17 C 0.017 3.983 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.169 4.169 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.157 0.843 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.470 -4.240 0.819 14.145 hybrid contribution 0.362 0.867 0.093 0.944 sum 13.832 -3.373 0.913 14.266 Atomic orbital electron populations 1.69748 1.06754 1.27978 1.45739 1.25301 0.94811 0.99119 0.92167 0.86529 0.79355 0.82770 0.78310 1.18412 1.23613 1.20228 1.18646 0.83605 0.95644 1.48742 0.88722 1.43630 1.07966 1.46598 1.19035 1.18741 0.85979 0.84328 0.81481 1.90543 1.53117 1.41427 1.57062 1.24111 0.93274 0.98753 0.98531 1.24685 0.93987 1.00600 0.96337 1.25284 0.97221 0.97241 0.97030 1.23738 0.93960 0.99545 0.96665 1.24152 0.94653 0.94937 1.00941 1.21988 0.92579 0.91789 0.91904 1.22688 1.03126 0.95499 0.95598 1.22421 1.00006 0.97509 0.95938 1.22260 1.01586 0.94513 0.97111 1.22443 1.00527 0.99397 0.94553 0.91944 0.91006 0.90412 0.84282 0.90832 0.91038 0.90435 0.90922 0.90162 0.89697 0.92631 0.92338 0.92105 0.92759 0.91155 0.93016 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.69 13.96 55.50 0.77 -25.92 16 2 C 0.09 2.81 4.85 -17.47 -0.08 2.72 16 3 Si 0.90 24.54 24.68 -169.99 -4.20 20.35 16 4 H -0.26 -7.48 6.41 56.52 0.36 -7.12 16 5 H -0.31 -8.19 7.11 56.52 0.40 -7.79 16 6 H -0.28 -7.19 7.06 56.52 0.40 -6.79 16 7 C -0.34 -9.49 8.19 -14.93 -0.12 -9.61 16 8 H 0.10 2.75 6.78 -52.49 -0.36 2.40 16 9 N -0.45 -10.85 2.02 -106.54 -0.22 -11.07 16 10 C 0.51 12.50 6.17 -10.98 -0.07 12.43 16 11 O -0.54 -15.69 12.81 5.55 0.07 -15.62 16 12 C -0.14 -2.70 2.45 -172.25 -0.42 -3.12 16 13 C -0.12 -1.81 7.50 -24.70 -0.19 -1.99 16 14 C -0.15 -1.92 8.58 -105.95 -0.91 -2.82 16 15 C -0.10 -1.64 7.78 -26.71 -0.21 -1.84 16 16 C -0.11 -1.60 7.42 -25.98 -0.19 -1.80 16 17 C 0.12 2.31 3.14 -66.81 -0.21 2.10 16 18 C -0.13 -2.23 6.41 -25.07 -0.16 -2.39 16 19 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 20 C -0.12 -1.82 6.83 -25.08 -0.17 -1.99 16 21 C -0.13 -2.37 6.28 -25.61 -0.16 -2.53 16 22 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 23 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 24 H 0.08 1.09 6.54 -51.93 -0.34 0.75 16 25 H 0.14 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.07 1.16 7.94 -51.93 -0.41 0.74 16 27 H 0.07 1.15 7.91 -51.93 -0.41 0.74 16 28 H 0.08 1.04 6.71 -51.93 -0.35 0.70 16 29 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 30 H 0.08 1.36 2.70 -51.93 -0.14 1.22 16 31 H 0.08 1.68 6.30 -51.93 -0.33 1.36 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.08 1.74 7.03 -51.93 -0.36 1.38 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -32.79 289.59 -7.92 -40.71 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.66 Total: -0.09 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -3.06 Total: -12.73 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.56 Total: -36.99 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.07 Total: -15.62 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.20 Total: 20.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.79 -7.92 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.851 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds