Wall clock time and date at job start Mon Mar 30 2020 07:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47369 * 275.20021 * 3 2 1 5 5 H 1.48501 * 109.46868 * 35.20168 * 3 2 1 6 6 H 1.48502 * 109.46921 * 155.19668 * 3 2 1 7 7 C 1.38950 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00135 * 341.04500 * 7 2 1 9 9 N 1.37103 * 119.99877 * 160.76804 * 7 2 1 10 10 C 1.34777 * 120.00136 * 313.87712 * 9 7 2 11 11 O 1.21292 * 120.00089 * 4.11611 * 10 9 7 12 12 C 1.50703 * 119.99894 * 184.11392 * 10 9 7 13 13 C 1.54897 * 129.08826 * 298.15760 * 12 10 9 14 14 C 1.57174 * 77.91324 * 180.16248 * 13 12 10 15 15 C 1.54410 * 83.73213 * 42.47322 * 14 13 12 16 16 C 1.54891 * 83.77408 * 317.35417 * 14 13 12 17 17 C 1.46504 * 119.99611 * 133.87872 * 9 7 2 18 18 C 1.54264 * 110.03275 * 57.16821 * 17 9 7 19 19 C 1.54890 * 104.19306 * 217.10576 * 18 17 9 20 20 C 1.54880 * 102.75276 * 37.94087 * 19 18 17 21 21 C 1.53870 * 110.03163 * 299.99978 * 17 9 7 22 22 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 23 23 H 1.09001 * 114.97404 * 291.95272 * 13 12 10 24 24 H 1.08990 * 114.97766 * 67.13157 * 13 12 10 25 25 H 1.09003 * 129.24793 * 179.19529 * 14 13 12 26 26 H 1.08998 * 114.93551 * 205.06536 * 15 14 13 27 27 H 1.08998 * 114.93358 * 70.03116 * 15 14 13 28 28 H 1.09003 * 116.12361 * 290.12686 * 16 14 13 29 29 H 1.08996 * 113.83375 * 154.95668 * 16 14 13 30 30 H 1.09005 * 110.01392 * 178.60986 * 17 9 7 31 31 H 1.09000 * 110.48760 * 335.78153 * 18 17 9 32 32 H 1.08996 * 110.48959 * 98.42716 * 18 17 9 33 33 H 1.09001 * 110.75351 * 279.62523 * 19 18 17 34 34 H 1.09000 * 110.91270 * 156.33237 * 19 18 17 35 35 H 1.08993 * 110.49128 * 203.37685 * 20 19 18 36 36 H 1.09004 * 110.60289 * 80.78952 * 20 19 18 37 37 H 1.09007 * 110.03329 * 238.57118 * 21 17 9 38 38 H 1.08997 * 110.03548 * 359.97438 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3858 2.1099 -1.3943 5 1 1.5048 2.6184 0.8071 6 1 3.5963 1.4109 0.5874 7 6 2.0088 -1.2033 -0.0005 8 1 1.5128 -2.1134 0.3029 9 7 3.3224 -1.2363 -0.3917 10 6 3.7086 -0.5929 -1.5112 11 8 2.9101 0.0766 -2.1320 12 6 5.1325 -0.7053 -1.9918 13 6 6.4393 -0.2665 -1.2853 14 6 6.9789 -0.8572 -2.6381 15 6 5.7843 -0.0951 -3.2516 16 6 5.9381 -1.9728 -2.3711 17 6 4.3064 -1.9709 0.4074 18 6 3.8771 -3.4458 0.5490 19 6 4.2905 -3.8247 1.9928 20 6 3.9719 -2.5352 2.7893 21 6 4.3667 -1.3919 1.8318 22 1 -0.4850 0.8401 0.0004 23 1 6.5645 0.8109 -1.1771 24 1 6.6893 -0.8318 -0.3876 25 1 8.0051 -0.9291 -2.9986 26 1 5.4201 -0.4962 -4.1974 27 1 5.8775 0.9908 -3.2405 28 1 6.1569 -2.6446 -1.5411 29 1 5.5972 -2.4820 -3.2725 30 1 5.2883 -1.9104 -0.0621 31 1 2.7987 -3.5430 0.4231 32 1 4.4042 -4.0677 -0.1744 33 1 5.3546 -4.0560 2.0418 34 1 3.6974 -4.6622 2.3603 35 1 4.5682 -2.4925 3.7007 36 1 2.9093 -2.4839 3.0270 37 1 5.3780 -1.0512 2.0539 38 1 3.6642 -0.5641 1.9284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599537899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:05 Heat of formation + Delta-G solvation = 51.344132 kcal Electronic energy + Delta-G solvation = -19685.918756 eV Core-core repulsion = 16917.435196 eV Total energy + Delta-G solvation = -2768.483560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.96388 -40.34613 -38.52959 -35.41665 -33.91215 -29.49993 -28.85685 -27.89781 -26.60569 -26.57791 -25.02102 -22.03559 -21.52153 -20.81061 -19.74926 -18.65085 -17.68458 -17.17828 -16.46406 -15.93066 -15.68042 -15.50794 -15.14308 -15.05721 -14.78403 -14.16401 -13.96165 -13.36769 -12.94984 -12.75743 -12.52768 -12.41243 -12.35160 -12.14049 -12.11944 -11.92826 -11.80980 -11.79283 -11.46740 -11.29100 -11.13180 -11.02620 -10.78465 -10.30589 -9.49336 -8.44429 -6.19025 1.13006 1.26608 1.40711 1.83009 2.37742 2.63434 3.03675 3.33521 3.43907 3.51394 3.65636 3.73553 3.80786 3.88371 3.95612 4.26071 4.45493 4.64142 4.64949 4.67048 4.67565 4.75003 4.76125 4.92123 4.94230 4.98207 5.00763 5.03918 5.08814 5.16989 5.28537 5.42192 5.52426 5.52713 5.60831 5.72123 5.94356 6.80811 6.92587 7.36258 7.91553 8.65485 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.013672 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.564068 B = 2047.447124 C = 3144.581010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.047 3.953 3 Si 0.949 3.051 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.259 1.259 7 C -0.324 4.324 8 H 0.070 0.930 9 N -0.462 5.462 10 C 0.495 3.505 11 O -0.600 6.600 12 C -0.200 4.200 13 C -0.114 4.114 14 C -0.088 4.088 15 C -0.114 4.114 16 C -0.099 4.099 17 C 0.115 3.885 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.135 4.135 22 H 0.270 0.730 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.191 0.809 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.009 -6.227 1.702 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.157 4.157 3 Si 0.779 3.221 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.183 1.183 7 C -0.452 4.452 8 H 0.088 0.912 9 N -0.182 5.182 10 C 0.286 3.714 11 O -0.485 6.485 12 C -0.203 4.203 13 C -0.151 4.151 14 C -0.105 4.105 15 C -0.152 4.152 16 C -0.136 4.136 17 C 0.012 3.988 18 C -0.170 4.170 19 C -0.145 4.145 20 C -0.154 4.154 21 C -0.173 4.173 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.208 0.792 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.428 -5.832 1.440 19.382 hybrid contribution -1.183 1.274 -0.154 1.745 sum 17.245 -4.558 1.287 17.884 Atomic orbital electron populations 1.69829 1.07853 1.28322 1.49054 1.25888 0.95293 1.01594 0.92932 0.85737 0.79490 0.80480 0.76406 1.21685 1.23034 1.18309 1.18524 0.85790 0.94218 1.46618 0.91215 1.43854 1.07478 1.46973 1.19914 1.19818 0.88440 0.82393 0.80708 1.90490 1.55683 1.43761 1.58600 1.24224 0.90922 1.03595 1.01558 1.24767 0.90978 1.00991 0.98412 1.25268 0.97791 0.93777 0.93651 1.23911 0.96004 0.99653 0.95648 1.24195 0.93705 0.94085 1.01646 1.22368 0.92408 0.92102 0.91876 1.22677 1.00854 0.94766 0.98727 1.22405 1.02345 0.96821 0.92932 1.22257 1.00442 0.94465 0.98198 1.22489 1.01272 0.98851 0.94687 0.92060 0.91441 0.88372 0.79213 0.91204 0.91822 0.88332 0.90822 0.87211 0.93813 0.90211 0.88659 0.91062 0.89507 0.94053 0.89701 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.50 13.96 21.66 0.30 -59.19 16 2 C 0.05 2.90 4.85 84.93 0.41 3.31 16 3 Si 0.95 53.21 24.68 68.60 1.69 54.90 16 4 H -0.29 -17.56 6.41 99.48 0.64 -16.93 16 5 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 6 H -0.26 -13.42 7.06 99.48 0.70 -12.72 16 7 C -0.32 -18.95 8.19 84.04 0.69 -18.26 16 8 H 0.07 4.34 6.78 -2.91 -0.02 4.32 16 9 N -0.46 -22.50 2.02 -609.37 -1.23 -23.74 16 10 C 0.50 24.80 6.17 87.66 0.54 25.34 16 11 O -0.60 -36.43 12.81 -3.07 -0.04 -36.47 16 12 C -0.20 -7.13 2.45 -63.68 -0.16 -7.29 16 13 C -0.11 -2.96 7.50 31.91 0.24 -2.72 16 14 C -0.09 -1.72 8.58 -20.73 -0.18 -1.90 16 15 C -0.11 -3.42 7.78 30.61 0.24 -3.18 16 16 C -0.10 -2.44 7.42 31.08 0.23 -2.21 16 17 C 0.12 4.13 3.14 45.71 0.14 4.28 16 18 C -0.13 -4.23 6.41 31.67 0.20 -4.02 16 19 C -0.11 -2.63 6.91 31.88 0.22 -2.41 16 20 C -0.12 -3.33 6.83 31.67 0.22 -3.12 16 21 C -0.13 -4.59 6.28 31.32 0.20 -4.39 16 22 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 23 H 0.07 1.82 7.91 -2.39 -0.02 1.80 16 24 H 0.10 2.14 6.54 -2.39 -0.02 2.13 16 25 H 0.19 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.10 7.94 -2.39 -0.02 2.08 16 27 H 0.06 1.97 7.91 -2.39 -0.02 1.95 16 28 H 0.10 2.04 6.71 -2.39 -0.02 2.02 16 29 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 30 H 0.11 3.25 2.70 -2.38 -0.01 3.25 16 31 H 0.04 1.76 6.30 -2.39 -0.02 1.74 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.04 1.61 7.03 -2.39 -0.02 1.60 16 Total: -1.00 -79.30 289.59 4.69 -74.61 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.98 Total: 6.47 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 2.99 Total: -16.58 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -0.93 Total: -82.93 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.04 Total: -36.47 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 1.69 Total: 54.90 kcal Total: -79.30 4.69 -74.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.953 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds