Wall clock time and date at job start Mon Mar 30 2020 07:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47117 * 269.99814 * 3 2 1 5 5 H 1.48500 * 109.47262 * 29.99770 * 3 2 1 6 6 H 1.48500 * 109.47059 * 150.00048 * 3 2 1 7 7 C 1.37878 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00091 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99776 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46805 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00142 * 90.00348 * 10 9 7 12 12 O 1.21283 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.53005 * 119.29752 * 109.76700 * 13 11 10 15 15 C 1.53004 * 60.34832 * 111.32058 * 14 13 11 16 16 H 1.09006 * 119.29686 * 248.68593 * 15 14 13 17 17 C 1.56166 * 117.02943 * 93.13032 * 15 14 13 18 18 C 1.54889 * 104.22622 * 272.14939 * 17 15 14 19 19 C 1.54259 * 117.41423 * 315.42731 * 13 11 10 20 20 C 1.46506 * 119.99919 * 269.99866 * 10 9 7 21 21 C 1.52995 * 117.49581 * 8.62876 * 20 10 9 22 22 C 1.52992 * 117.50087 * 300.00497 * 20 10 9 23 23 H 0.96994 * 120.00041 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.46899 * 60.00793 * 9 7 2 25 25 H 1.09002 * 109.46944 * 300.00051 * 9 7 2 26 26 H 1.09002 * 117.46173 * 218.90708 * 14 13 11 27 27 H 1.09003 * 117.46029 * 3.73582 * 14 13 11 28 28 H 1.08996 * 110.14940 * 153.61687 * 17 15 14 29 29 H 1.09001 * 110.90229 * 31.05353 * 17 15 14 30 30 H 1.09007 * 110.75203 * 280.00078 * 18 17 15 31 31 H 1.09006 * 110.75170 * 156.63870 * 18 17 15 32 32 H 1.09008 * 110.48681 * 1.09406 * 19 13 11 33 33 H 1.09003 * 110.48821 * 123.73637 * 19 13 11 34 34 H 1.08998 * 115.54827 * 154.33216 * 20 10 9 35 35 H 1.08998 * 117.50588 * 359.97438 * 21 20 10 36 36 H 1.09003 * 117.49811 * 145.02433 * 21 20 10 37 37 H 1.09003 * 117.50061 * 214.98280 * 22 20 10 38 38 H 1.09001 * 117.49828 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.2242 -3.2109 -1.1670 12 8 4.0213 -2.6395 -2.2174 13 6 4.7270 -4.6314 -1.1669 14 6 3.7929 -5.7564 -1.6174 15 6 4.9999 -5.3835 -2.4806 16 1 4.8373 -4.9102 -3.4490 17 6 6.3181 -6.1860 -2.2418 18 6 7.0394 -5.4066 -1.1143 19 6 5.8705 -4.9800 -0.1920 20 6 4.2446 -3.2656 1.2689 21 6 3.7836 -2.5706 2.5515 22 6 5.2748 -2.6526 2.2195 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8905 26 1 3.8384 -6.6974 -1.0692 27 1 2.8061 -5.4737 -1.9842 28 1 6.9232 -6.1925 -3.1485 29 1 6.1005 -7.2052 -1.9222 30 1 7.5531 -4.5331 -1.5161 31 1 7.7356 -6.0543 -0.5814 32 1 6.1490 -4.1064 0.3974 33 1 5.5786 -5.8037 0.4596 34 1 4.1772 -4.3529 1.2331 35 1 3.2986 -1.5996 2.4515 36 1 3.4127 -3.2007 3.3600 37 1 5.8850 -3.3366 2.8093 38 1 5.7709 -1.7359 1.9007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693230526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:27 Heat of formation + Delta-G solvation = 22.345807 kcal Electronic energy + Delta-G solvation = -18960.069743 eV Core-core repulsion = 16190.328720 eV Total energy + Delta-G solvation = -2769.741022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30573 -38.04871 -36.67998 -33.20136 -32.01811 -31.55624 -29.15686 -27.41935 -23.54684 -22.44198 -22.28356 -21.99882 -20.45177 -19.89177 -18.05188 -16.91214 -16.64014 -15.61193 -15.09319 -14.84564 -14.24801 -13.95693 -13.65514 -13.32973 -13.04040 -12.87617 -12.57830 -12.09268 -11.74204 -11.48459 -11.21050 -11.09922 -11.00975 -10.92493 -10.82827 -10.59985 -10.46771 -10.17783 -10.06828 -9.96532 -9.55796 -9.47069 -8.88426 -8.58412 -7.56684 -6.07957 -4.06148 3.10957 3.28166 3.34011 3.36426 3.65412 3.90575 4.34389 4.39393 4.50397 4.75720 4.86048 4.94730 5.21977 5.24433 5.29302 5.31272 5.40526 5.41803 5.46891 5.62030 5.72972 5.81383 5.85514 5.89270 5.93760 6.08823 6.14224 6.21302 6.30368 6.37174 6.43398 6.61199 6.75371 6.94913 7.35594 7.60898 8.28581 8.48400 8.95145 9.01952 9.52272 11.05438 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.007195 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.466755 B = 3890.586474 C = 4307.779205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.214 3.786 10 N -0.561 5.561 11 C 0.554 3.446 12 O -0.539 6.539 13 C -0.171 4.171 14 C -0.127 4.127 15 C -0.134 4.134 16 H 0.120 0.880 17 C -0.094 4.094 18 C -0.124 4.124 19 C -0.090 4.090 20 C 0.083 3.917 21 C -0.176 4.176 22 C -0.208 4.208 23 H 0.264 0.736 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.238 -11.725 2.655 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.094 3.906 10 N -0.290 5.290 11 C 0.341 3.659 12 O -0.417 6.417 13 C -0.174 4.174 14 C -0.164 4.164 15 C -0.152 4.152 16 H 0.138 0.862 17 C -0.131 4.131 18 C -0.161 4.161 19 C -0.127 4.127 20 C -0.023 4.023 21 C -0.213 4.213 22 C -0.247 4.247 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.963 -11.247 2.087 17.288 hybrid contribution 0.159 1.040 0.100 1.057 sum 13.122 -10.208 2.187 16.768 Atomic orbital electron populations 1.69895 1.06124 1.26902 1.50610 1.24841 0.94743 0.98785 0.94587 0.86906 0.80191 0.84043 0.78908 1.19923 1.20998 1.19130 1.21291 0.88978 0.94818 1.51022 0.90662 1.19678 0.95888 0.77790 0.97270 1.47292 1.63217 1.15124 1.03372 1.19090 0.77397 0.85879 0.83545 1.90662 1.52608 1.67344 1.31044 1.22361 1.02421 0.92650 1.00001 1.23086 0.95235 0.96736 1.01343 1.23728 0.95341 1.01057 0.95123 0.86222 1.22295 0.94144 0.98030 0.98648 1.22680 0.97357 0.99841 0.96263 1.22166 0.92507 1.01649 0.96414 1.21582 1.02869 0.95649 0.82187 1.23368 0.95902 1.04338 0.97710 1.23451 0.93053 1.03649 1.04499 0.92588 0.95109 0.94657 0.88438 0.87908 0.91347 0.91292 0.91306 0.91324 0.89801 0.91072 0.85948 0.86685 0.88674 0.88766 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.12 9.74 -34.44 -0.34 -15.46 16 8 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 9 C 0.21 5.34 3.53 -5.19 -0.02 5.32 16 10 N -0.56 -12.01 2.79 -167.48 -0.47 -12.48 16 11 C 0.55 11.92 7.33 -10.99 -0.08 11.84 16 12 O -0.54 -13.91 16.37 5.55 0.09 -13.82 16 13 C -0.17 -2.72 1.92 -154.58 -0.30 -3.01 16 14 C -0.13 -1.78 9.83 -26.73 -0.26 -2.04 16 15 C -0.13 -1.88 6.71 -88.50 -0.59 -2.47 16 16 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 17 C -0.09 -1.00 6.66 -24.04 -0.16 -1.16 16 18 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 19 C -0.09 -1.11 4.56 -25.08 -0.11 -1.22 16 20 C 0.08 1.39 4.34 -67.93 -0.30 1.09 16 21 C -0.18 -2.85 9.72 -26.73 -0.26 -3.11 16 22 C -0.21 -2.92 9.22 -26.74 -0.25 -3.17 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.03 0.73 5.39 -51.93 -0.28 0.45 16 25 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.09 5.46 -51.92 -0.28 0.81 16 33 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 34 H 0.12 1.79 6.01 -51.93 -0.31 1.47 16 35 H 0.11 2.24 6.29 -51.93 -0.33 1.91 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 LS Contribution 303.00 15.07 4.57 4.57 Total: -1.00 -33.39 303.00 -8.43 -41.82 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.79 Total: 2.68 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.93 Total: -12.86 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.31 Total: -39.49 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.39 -8.43 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693230526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.165 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds