Wall clock time and date at job start Mon Mar 30 2020 07:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47117 * 269.99814 * 3 2 1 5 5 H 1.48500 * 109.47262 * 29.99770 * 3 2 1 6 6 H 1.48500 * 109.47059 * 150.00048 * 3 2 1 7 7 C 1.37878 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00091 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99776 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46805 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00142 * 90.00348 * 10 9 7 12 12 O 1.21283 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.53005 * 119.29752 * 109.76700 * 13 11 10 15 15 C 1.53004 * 60.34832 * 111.32058 * 14 13 11 16 16 H 1.09006 * 119.29686 * 248.68593 * 15 14 13 17 17 C 1.56166 * 117.02943 * 93.13032 * 15 14 13 18 18 C 1.54889 * 104.22622 * 272.14939 * 17 15 14 19 19 C 1.54259 * 117.41423 * 315.42731 * 13 11 10 20 20 C 1.46506 * 119.99919 * 269.99866 * 10 9 7 21 21 C 1.52995 * 117.49581 * 8.62876 * 20 10 9 22 22 C 1.52992 * 117.50087 * 300.00497 * 20 10 9 23 23 H 0.96994 * 120.00041 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.46899 * 60.00793 * 9 7 2 25 25 H 1.09002 * 109.46944 * 300.00051 * 9 7 2 26 26 H 1.09002 * 117.46173 * 218.90708 * 14 13 11 27 27 H 1.09003 * 117.46029 * 3.73582 * 14 13 11 28 28 H 1.08996 * 110.14940 * 153.61687 * 17 15 14 29 29 H 1.09001 * 110.90229 * 31.05353 * 17 15 14 30 30 H 1.09007 * 110.75203 * 280.00078 * 18 17 15 31 31 H 1.09006 * 110.75170 * 156.63870 * 18 17 15 32 32 H 1.09008 * 110.48681 * 1.09406 * 19 13 11 33 33 H 1.09003 * 110.48821 * 123.73637 * 19 13 11 34 34 H 1.08998 * 115.54827 * 154.33216 * 20 10 9 35 35 H 1.08998 * 117.50588 * 359.97438 * 21 20 10 36 36 H 1.09003 * 117.49811 * 145.02433 * 21 20 10 37 37 H 1.09003 * 117.50061 * 214.98280 * 22 20 10 38 38 H 1.09001 * 117.49828 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.2242 -3.2109 -1.1670 12 8 4.0213 -2.6395 -2.2174 13 6 4.7270 -4.6314 -1.1669 14 6 3.7929 -5.7564 -1.6174 15 6 4.9999 -5.3835 -2.4806 16 1 4.8373 -4.9102 -3.4490 17 6 6.3181 -6.1860 -2.2418 18 6 7.0394 -5.4066 -1.1143 19 6 5.8705 -4.9800 -0.1920 20 6 4.2446 -3.2656 1.2689 21 6 3.7836 -2.5706 2.5515 22 6 5.2748 -2.6526 2.2195 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8905 26 1 3.8384 -6.6974 -1.0692 27 1 2.8061 -5.4737 -1.9842 28 1 6.9232 -6.1925 -3.1485 29 1 6.1005 -7.2052 -1.9222 30 1 7.5531 -4.5331 -1.5161 31 1 7.7356 -6.0543 -0.5814 32 1 6.1490 -4.1064 0.3974 33 1 5.5786 -5.8037 0.4596 34 1 4.1772 -4.3529 1.2331 35 1 3.2986 -1.5996 2.4515 36 1 3.4127 -3.2007 3.3600 37 1 5.8850 -3.3366 2.8093 38 1 5.7709 -1.7359 1.9007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693230526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:26 Heat of formation + Delta-G solvation = 0.844349 kcal Electronic energy + Delta-G solvation = -18961.002116 eV Core-core repulsion = 16190.328720 eV Total energy + Delta-G solvation = -2770.673395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65710 -39.37992 -38.22924 -35.22262 -33.89712 -32.52224 -30.81687 -28.82831 -25.25268 -24.03175 -23.44124 -23.20289 -21.58380 -21.17415 -19.51486 -19.13247 -17.99678 -17.25388 -16.50286 -16.35149 -15.85235 -15.28097 -15.17238 -14.71048 -14.50851 -14.07385 -13.91748 -13.69048 -13.62687 -12.87300 -12.74103 -12.61853 -12.43701 -12.19326 -12.02705 -11.90847 -11.88006 -11.76768 -11.45932 -11.35533 -11.23364 -10.88025 -10.63921 -10.49400 -9.25630 -8.38363 -6.42819 1.25585 1.29917 1.37986 1.57261 2.12931 2.25129 2.69474 2.94695 3.07234 3.47034 3.64959 3.70136 3.85823 3.98709 4.06723 4.20124 4.26856 4.47009 4.49481 4.61905 4.70197 4.72456 4.79810 4.84446 4.85708 4.94882 5.03719 5.10564 5.20481 5.22621 5.25670 5.32929 5.36640 5.39445 5.52379 5.58394 6.19759 6.57340 6.66772 7.16390 7.36210 8.78727 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.007195 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.466755 B = 3890.586474 C = 4307.779205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.241 1.241 7 C -0.527 4.527 8 H 0.027 0.973 9 C 0.226 3.774 10 N -0.569 5.569 11 C 0.537 3.463 12 O -0.602 6.602 13 C -0.187 4.187 14 C -0.118 4.118 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.083 4.083 18 C -0.120 4.120 19 C -0.083 4.083 20 C 0.059 3.941 21 C -0.191 4.191 22 C -0.170 4.170 23 H 0.269 0.731 24 H 0.049 0.951 25 H 0.011 0.989 26 H 0.139 0.861 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.360 -13.494 4.641 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.165 1.165 7 C -0.566 4.566 8 H 0.045 0.955 9 C 0.104 3.896 10 N -0.297 5.297 11 C 0.328 3.672 12 O -0.484 6.484 13 C -0.190 4.190 14 C -0.156 4.156 15 C -0.154 4.154 16 H 0.109 0.891 17 C -0.120 4.120 18 C -0.157 4.157 19 C -0.120 4.120 20 C -0.045 4.045 21 C -0.228 4.228 22 C -0.208 4.208 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.167 0.833 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.108 -13.051 4.122 21.137 hybrid contribution -0.920 1.550 -0.558 1.887 sum 15.188 -11.501 3.564 19.381 Atomic orbital electron populations 1.70040 1.08039 1.28294 1.51873 1.25795 0.95668 1.03044 0.93947 0.85797 0.79901 0.78815 0.78984 1.20315 1.19430 1.16471 1.21420 0.91148 0.93099 1.50902 0.95511 1.19273 0.93082 0.80629 0.96614 1.47374 1.62625 1.14065 1.05604 1.20228 0.76349 0.88095 0.82575 1.90607 1.55338 1.69322 1.33143 1.22411 1.04446 0.89157 1.02946 1.23169 0.93736 0.97402 1.01246 1.23896 0.97372 1.00830 0.93273 0.89113 1.22334 0.91643 0.98654 0.99362 1.22691 0.97132 0.99875 0.95986 1.22229 0.91188 1.02496 0.96071 1.22045 1.05497 0.96756 0.80208 1.23384 0.98088 1.02968 0.98389 1.23519 0.91832 1.03472 1.01966 0.92199 0.93356 0.97076 0.84312 0.90983 0.90458 0.88482 0.92875 0.87854 0.90443 0.87869 0.83280 0.90580 0.85905 0.84115 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.80 13.96 21.45 0.30 -60.50 16 2 C 0.01 0.83 5.47 84.65 0.46 1.29 16 3 Si 0.94 45.87 27.47 68.60 1.88 47.76 16 4 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.53 -32.17 9.74 25.60 0.25 -31.92 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.23 11.66 3.53 85.63 0.30 11.97 16 10 N -0.57 -24.88 2.79 -802.16 -2.24 -27.12 16 11 C 0.54 24.02 7.33 87.66 0.64 24.67 16 12 O -0.60 -33.24 16.37 -3.04 -0.05 -33.29 16 13 C -0.19 -5.76 1.92 -52.23 -0.10 -5.86 16 14 C -0.12 -3.21 9.83 30.60 0.30 -2.90 16 15 C -0.13 -3.69 6.71 -9.42 -0.06 -3.75 16 16 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 17 C -0.08 -1.45 6.66 32.34 0.22 -1.23 16 18 C -0.12 -2.04 6.91 31.88 0.22 -1.82 16 19 C -0.08 -1.71 4.56 31.66 0.14 -1.57 16 20 C 0.06 1.87 4.34 44.99 0.20 2.06 16 21 C -0.19 -5.90 9.72 30.59 0.30 -5.60 16 22 C -0.17 -4.18 9.22 30.59 0.28 -3.90 16 23 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 24 H 0.05 2.31 5.39 -2.39 -0.01 2.30 16 25 H 0.01 0.63 6.85 -2.39 -0.02 0.61 16 26 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.72 5.46 -2.38 -0.01 1.71 16 33 H 0.10 1.52 7.96 -2.39 -0.02 1.50 16 34 H 0.15 3.89 6.01 -2.39 -0.01 3.87 16 35 H 0.08 2.98 6.29 -2.39 -0.02 2.96 16 36 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -80.41 303.00 4.03 -76.38 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.99 Total: 15.35 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.15 Total: -18.58 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -1.94 Total: -87.62 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.05 Total: -33.29 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -80.41 4.03 -76.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693230526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.228 kcal (2) G-P(sol) polarization free energy of solvation -80.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds