Wall clock time and date at job start Mon Mar 30 2020 07:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48501 * 109.47053 * 270.00040 * 3 2 1 5 5 H 1.48500 * 109.47339 * 29.99781 * 3 2 1 6 6 H 1.48502 * 109.46940 * 150.00511 * 3 2 1 7 7 C 1.37870 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00559 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.34786 * 119.99605 * 269.99623 * 10 9 7 12 12 O 1.21278 * 119.99778 * 5.46180 * 11 10 9 13 13 C 1.50701 * 119.99736 * 185.46725 * 11 10 9 14 14 C 1.53002 * 119.29297 * 259.30839 * 13 11 10 15 15 C 1.53004 * 60.37743 * 248.69754 * 14 13 11 16 16 H 1.09001 * 119.75271 * 111.12496 * 15 14 13 17 17 C 1.54266 * 118.19728 * 266.38442 * 15 14 13 18 18 C 1.54899 * 104.19436 * 87.79033 * 17 15 14 19 19 C 1.54255 * 117.41564 * 54.96605 * 13 11 10 20 20 C 1.46494 * 120.00538 * 89.99891 * 10 9 7 21 21 C 1.53005 * 117.49597 * 2.93367 * 20 10 9 22 22 C 1.53004 * 117.49755 * 294.31337 * 20 10 9 23 23 H 0.97002 * 119.99994 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46884 * 59.99921 * 9 7 2 25 25 H 1.09008 * 109.46536 * 300.00167 * 9 7 2 26 26 H 1.08996 * 117.46550 * 356.29215 * 14 13 11 27 27 H 1.08999 * 117.46044 * 141.09924 * 14 13 11 28 28 H 1.09000 * 110.48768 * 206.46538 * 17 15 14 29 29 H 1.08997 * 110.49036 * 328.98353 * 17 15 14 30 30 H 1.08993 * 110.75295 * 80.37286 * 18 17 15 31 31 H 1.09002 * 110.75168 * 203.55715 * 18 17 15 32 32 H 1.09004 * 110.48882 * 235.04953 * 19 13 11 33 33 H 1.09005 * 110.49060 * 357.68863 * 19 13 11 34 34 H 1.09003 * 115.55368 * 148.64270 * 20 10 9 35 35 H 1.08994 * 117.49726 * 0.02562 * 21 20 10 36 36 H 1.09008 * 117.49450 * 145.02099 * 21 20 10 37 37 H 1.09000 * 117.49687 * 214.97631 * 22 20 10 38 38 H 1.08996 * 117.50114 * 359.97298 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6408 -4.1248 -1.1679 12 8 2.3253 -3.6021 -2.2157 13 6 3.5223 -5.3472 -1.1709 14 6 5.0318 -5.1811 -1.3572 15 6 4.2016 -5.8404 -2.4604 16 1 4.0572 -5.3251 -3.4100 17 6 4.0811 -7.3784 -2.4614 18 6 2.8612 -7.6644 -1.5506 19 6 2.9999 -6.6014 -0.4404 20 6 2.6791 -4.1694 1.2681 21 6 2.0931 -3.5909 2.5576 22 6 3.5343 -3.2664 2.1592 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8898 26 1 5.4076 -4.1752 -1.5442 27 1 5.6849 -5.8241 -0.7672 28 1 3.8978 -7.7460 -3.4711 29 1 4.9823 -7.8320 -2.0490 30 1 1.9292 -7.5202 -2.0969 31 1 2.9143 -8.6724 -1.1393 32 1 3.7225 -6.9389 0.3026 33 1 2.0371 -6.3969 0.0279 34 1 2.9155 -5.2334 1.2553 35 1 1.3531 -2.7964 2.4620 36 1 1.9438 -4.2745 3.3935 37 1 4.3330 -3.7364 2.7330 38 1 3.7430 -2.2582 1.8014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693230540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:31 Heat of formation + Delta-G solvation = 17.608542 kcal Electronic energy + Delta-G solvation = -18918.829204 eV Core-core repulsion = 16148.882759 eV Total energy + Delta-G solvation = -2769.946445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22461 -37.98835 -36.47514 -33.14041 -31.92544 -31.57084 -28.88572 -27.06105 -23.70977 -22.61584 -22.32434 -21.68336 -20.41984 -19.89379 -18.01410 -16.60740 -16.38590 -15.54051 -15.00952 -14.77518 -14.21543 -13.92151 -13.54687 -13.37502 -13.10027 -12.84915 -12.22611 -11.95866 -11.49746 -11.36397 -11.08039 -11.02108 -10.96208 -10.89724 -10.83286 -10.48613 -10.39405 -10.13879 -10.02227 -9.92962 -9.47948 -9.42978 -8.77139 -8.40979 -7.47221 -6.02716 -4.06643 3.25997 3.31859 3.37980 3.40248 3.70967 3.96317 4.44691 4.48081 4.53470 4.77949 4.89140 5.02487 5.30852 5.32212 5.36358 5.45768 5.47302 5.52775 5.61440 5.65803 5.73464 5.82998 5.85975 5.94314 6.10131 6.13642 6.15624 6.26015 6.31792 6.45962 6.66871 6.81891 7.13084 7.45088 7.58994 7.94244 8.25037 8.49140 8.92510 9.15325 9.58052 11.05229 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.006841 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.711652 B = 4092.120677 C = 4425.200928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.243 3.757 10 N -0.566 5.566 11 C 0.550 3.450 12 O -0.538 6.538 13 C -0.167 4.167 14 C -0.124 4.124 15 C -0.139 4.139 16 H 0.116 0.884 17 C -0.093 4.093 18 C -0.123 4.123 19 C -0.085 4.085 20 C 0.069 3.931 21 C -0.184 4.184 22 C -0.192 4.192 23 H 0.263 0.737 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.862 -14.447 2.393 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.124 3.876 10 N -0.295 5.295 11 C 0.337 3.663 12 O -0.415 6.415 13 C -0.170 4.170 14 C -0.161 4.161 15 C -0.158 4.158 16 H 0.134 0.866 17 C -0.131 4.131 18 C -0.161 4.161 19 C -0.122 4.122 20 C -0.037 4.037 21 C -0.221 4.221 22 C -0.231 4.231 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.475 -14.024 1.829 15.997 hybrid contribution 0.415 1.157 0.118 1.234 sum 7.890 -12.868 1.947 15.219 Atomic orbital electron populations 1.69931 1.05949 1.26931 1.50680 1.24923 0.94859 0.99126 0.95200 0.86534 0.79696 0.83220 0.78201 1.20613 1.21168 1.19938 1.21407 0.93251 0.90517 1.50619 0.92463 1.19355 0.87521 0.82319 0.98419 1.47599 1.44448 1.34449 1.02990 1.19049 0.80194 0.83332 0.83761 1.90668 1.57882 1.61616 1.31378 1.22388 0.95097 0.96442 1.03089 1.23020 0.90680 1.02098 1.00342 1.23306 1.03640 0.94947 0.93862 0.86568 1.21954 0.98028 0.93054 1.00033 1.22592 0.98745 0.98201 0.96537 1.21878 1.01253 0.91912 0.97188 1.21726 1.03512 0.95866 0.82585 1.23285 0.98114 1.04156 0.96546 1.23380 0.93390 1.02704 1.03617 0.92768 0.94098 0.94410 0.88114 0.88578 0.91220 0.91416 0.91245 0.91269 0.91111 0.90521 0.86184 0.86857 0.89207 0.89613 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.74 8.70 -34.44 -0.30 -15.04 16 8 H 0.06 1.64 7.21 -52.48 -0.38 1.26 16 9 C 0.24 6.42 4.66 -5.20 -0.02 6.39 16 10 N -0.57 -12.42 2.79 -167.47 -0.47 -12.88 16 11 C 0.55 12.08 7.19 -10.98 -0.08 12.00 16 12 O -0.54 -14.26 16.44 5.56 0.09 -14.17 16 13 C -0.17 -2.69 1.89 -154.55 -0.29 -2.98 16 14 C -0.12 -1.73 9.87 -26.73 -0.26 -1.99 16 15 C -0.14 -1.99 6.56 -89.50 -0.59 -2.57 16 16 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 17 C -0.09 -1.02 6.63 -25.07 -0.17 -1.19 16 18 C -0.12 -1.37 6.88 -25.03 -0.17 -1.54 16 19 C -0.08 -1.08 4.46 -25.38 -0.11 -1.19 16 20 C 0.07 1.19 5.60 -67.93 -0.38 0.81 16 21 C -0.18 -3.06 9.74 -26.73 -0.26 -3.32 16 22 C -0.19 -3.22 10.27 -26.73 -0.27 -3.50 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 25 H 0.04 1.00 5.99 -51.92 -0.31 0.69 16 26 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 33 H 0.08 1.04 7.07 -51.93 -0.37 0.67 16 34 H 0.12 1.73 4.82 -51.93 -0.25 1.48 16 35 H 0.11 2.25 6.11 -51.93 -0.32 1.93 16 36 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 2.15 6.93 -51.93 -0.36 1.79 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -32.44 306.50 -8.78 -41.22 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.73 Total: 2.58 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.01 Total: -12.47 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.27 Total: -38.87 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.09 Total: -14.17 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.44 -8.78 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693230540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.829 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds