Wall clock time and date at job start Mon Mar 30 2020 07:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48501 * 109.47053 * 270.00040 * 3 2 1 5 5 H 1.48500 * 109.47339 * 29.99781 * 3 2 1 6 6 H 1.48502 * 109.46940 * 150.00511 * 3 2 1 7 7 C 1.37870 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00559 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.34786 * 119.99605 * 269.99623 * 10 9 7 12 12 O 1.21278 * 119.99778 * 5.46180 * 11 10 9 13 13 C 1.50701 * 119.99736 * 185.46725 * 11 10 9 14 14 C 1.53002 * 119.29297 * 259.30839 * 13 11 10 15 15 C 1.53004 * 60.37743 * 248.69754 * 14 13 11 16 16 H 1.09001 * 119.75271 * 111.12496 * 15 14 13 17 17 C 1.54266 * 118.19728 * 266.38442 * 15 14 13 18 18 C 1.54899 * 104.19436 * 87.79033 * 17 15 14 19 19 C 1.54255 * 117.41564 * 54.96605 * 13 11 10 20 20 C 1.46494 * 120.00538 * 89.99891 * 10 9 7 21 21 C 1.53005 * 117.49597 * 2.93367 * 20 10 9 22 22 C 1.53004 * 117.49755 * 294.31337 * 20 10 9 23 23 H 0.97002 * 119.99994 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46884 * 59.99921 * 9 7 2 25 25 H 1.09008 * 109.46536 * 300.00167 * 9 7 2 26 26 H 1.08996 * 117.46550 * 356.29215 * 14 13 11 27 27 H 1.08999 * 117.46044 * 141.09924 * 14 13 11 28 28 H 1.09000 * 110.48768 * 206.46538 * 17 15 14 29 29 H 1.08997 * 110.49036 * 328.98353 * 17 15 14 30 30 H 1.08993 * 110.75295 * 80.37286 * 18 17 15 31 31 H 1.09002 * 110.75168 * 203.55715 * 18 17 15 32 32 H 1.09004 * 110.48882 * 235.04953 * 19 13 11 33 33 H 1.09005 * 110.49060 * 357.68863 * 19 13 11 34 34 H 1.09003 * 115.55368 * 148.64270 * 20 10 9 35 35 H 1.08994 * 117.49726 * 0.02562 * 21 20 10 36 36 H 1.09008 * 117.49450 * 145.02099 * 21 20 10 37 37 H 1.09000 * 117.49687 * 214.97631 * 22 20 10 38 38 H 1.08996 * 117.50114 * 359.97298 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6408 -4.1248 -1.1679 12 8 2.3253 -3.6021 -2.2157 13 6 3.5223 -5.3472 -1.1709 14 6 5.0318 -5.1811 -1.3572 15 6 4.2016 -5.8404 -2.4604 16 1 4.0572 -5.3251 -3.4100 17 6 4.0811 -7.3784 -2.4614 18 6 2.8612 -7.6644 -1.5506 19 6 2.9999 -6.6014 -0.4404 20 6 2.6791 -4.1694 1.2681 21 6 2.0931 -3.5909 2.5576 22 6 3.5343 -3.2664 2.1592 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8898 26 1 5.4076 -4.1752 -1.5442 27 1 5.6849 -5.8241 -0.7672 28 1 3.8978 -7.7460 -3.4711 29 1 4.9823 -7.8320 -2.0490 30 1 1.9292 -7.5202 -2.0969 31 1 2.9143 -8.6724 -1.1393 32 1 3.7225 -6.9389 0.3026 33 1 2.0371 -6.3969 0.0279 34 1 2.9155 -5.2334 1.2553 35 1 1.3531 -2.7964 2.4620 36 1 1.9438 -4.2745 3.3935 37 1 4.3330 -3.7364 2.7330 38 1 3.7430 -2.2582 1.8014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693230540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:31 Heat of formation + Delta-G solvation = -2.307234 kcal Electronic energy + Delta-G solvation = -18919.692817 eV Core-core repulsion = 16148.882759 eV Total energy + Delta-G solvation = -2770.810058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59611 -39.40950 -38.11147 -35.21809 -33.78548 -32.56586 -30.37622 -28.71993 -25.57693 -24.08536 -23.60346 -23.03755 -21.63550 -21.14541 -19.49047 -18.69195 -17.93556 -17.19949 -16.65849 -16.09853 -15.77770 -15.58755 -15.04201 -14.65430 -14.30267 -14.09423 -13.88667 -13.56050 -13.41734 -12.92598 -12.77301 -12.71483 -12.24132 -12.15253 -12.04164 -11.96363 -11.92951 -11.79227 -11.43527 -11.29950 -11.22707 -10.67730 -10.57724 -10.43881 -9.27287 -8.25511 -6.39402 1.30791 1.34048 1.43491 1.66783 2.17828 2.37044 2.65842 3.02966 3.08990 3.49341 3.66855 3.70287 3.90324 4.01691 4.13449 4.24051 4.30705 4.48223 4.52964 4.70131 4.73492 4.80362 4.84027 4.88832 4.99930 5.03611 5.06544 5.16437 5.19749 5.22690 5.26285 5.34588 5.46714 5.51021 5.53902 5.82002 6.02437 6.66402 6.78490 7.24603 7.45045 8.81413 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.006841 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.711652 B = 4092.120677 C = 4425.200928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.259 3.741 10 N -0.572 5.572 11 C 0.536 3.464 12 O -0.604 6.604 13 C -0.184 4.184 14 C -0.105 4.105 15 C -0.143 4.143 16 H 0.085 0.915 17 C -0.083 4.083 18 C -0.120 4.120 19 C -0.080 4.080 20 C 0.058 3.942 21 C -0.180 4.180 22 C -0.184 4.184 23 H 0.267 0.733 24 H -0.011 1.011 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 -16.897 4.324 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.066 0.934 9 C 0.138 3.862 10 N -0.300 5.300 11 C 0.325 3.675 12 O -0.486 6.486 13 C -0.187 4.187 14 C -0.142 4.142 15 C -0.162 4.162 16 H 0.103 0.897 17 C -0.120 4.120 18 C -0.158 4.158 19 C -0.117 4.117 20 C -0.046 4.046 21 C -0.218 4.218 22 C -0.223 4.223 23 H 0.076 0.924 24 H 0.007 0.993 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.179 0.821 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.074 -16.501 3.802 19.704 hybrid contribution -0.437 1.949 -0.522 2.065 sum 9.637 -14.552 3.279 17.759 Atomic orbital electron populations 1.70047 1.07466 1.28087 1.51239 1.25827 0.95803 1.02901 0.94601 0.85476 0.78890 0.78714 0.78129 1.20814 1.19653 1.18681 1.21580 0.92839 0.91744 1.50718 0.93351 1.18800 0.87969 0.83911 0.95519 1.47605 1.43620 1.33346 1.05417 1.20230 0.80016 0.84631 0.82582 1.90614 1.60406 1.64015 1.33570 1.22371 0.95400 0.94969 1.05987 1.23136 0.89385 1.01791 0.99888 1.23479 1.02998 0.97477 0.92196 0.89660 1.21986 0.99301 0.89842 1.00872 1.22607 0.97793 0.99492 0.95868 1.21949 1.01411 0.90198 0.98136 1.22223 1.04143 0.97739 0.80474 1.23298 0.97101 1.03750 0.97624 1.23373 0.94672 1.00808 1.03409 0.92409 0.99317 0.94955 0.90394 0.84097 0.90574 0.88198 0.93460 0.87713 0.87225 0.91855 0.82057 0.91019 0.84692 0.84964 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.44 0.28 -57.43 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 4 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -31.72 8.70 25.60 0.22 -31.49 16 8 H 0.05 2.91 7.21 -2.91 -0.02 2.89 16 9 C 0.26 14.69 4.66 85.63 0.40 15.09 16 10 N -0.57 -26.13 2.79 -802.13 -2.23 -28.37 16 11 C 0.54 24.60 7.19 87.66 0.63 25.23 16 12 O -0.60 -34.61 16.44 -3.02 -0.05 -34.66 16 13 C -0.18 -5.72 1.89 -52.21 -0.10 -5.82 16 14 C -0.10 -2.66 9.87 30.60 0.30 -2.36 16 15 C -0.14 -3.91 6.56 -10.07 -0.07 -3.98 16 16 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 17 C -0.08 -1.51 6.63 31.67 0.21 -1.30 16 18 C -0.12 -2.24 6.88 31.69 0.22 -2.02 16 19 C -0.08 -1.74 4.46 31.47 0.14 -1.60 16 20 C 0.06 1.93 5.60 45.00 0.25 2.18 16 21 C -0.18 -5.77 9.74 30.60 0.30 -5.47 16 22 C -0.18 -5.83 10.27 30.60 0.31 -5.51 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H -0.01 -0.74 7.50 -2.39 -0.02 -0.76 16 25 H 0.03 1.85 5.99 -2.38 -0.01 1.83 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.14 2.33 8.14 -2.39 -0.02 2.32 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.11 1.59 7.99 -2.39 -0.02 1.57 16 33 H 0.06 1.56 7.07 -2.38 -0.02 1.54 16 34 H 0.16 4.02 4.82 -2.39 -0.01 4.01 16 35 H 0.07 2.94 6.11 -2.39 -0.01 2.92 16 36 H 0.14 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.07 2.71 6.93 -2.39 -0.02 2.69 16 Total: -1.00 -78.72 306.50 4.36 -74.36 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.04 Total: 13.71 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 3.28 Total: -16.15 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.95 Total: -85.80 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.05 Total: -34.66 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.72 4.36 -74.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693230540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.054 kcal (2) G-P(sol) polarization free energy of solvation -78.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds