Wall clock time and date at job start Mon Mar 30 2020 07:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48504 * 109.47270 * 269.99546 * 3 2 1 5 5 H 1.48496 * 109.47462 * 29.99822 * 3 2 1 6 6 H 1.48506 * 109.47158 * 149.99454 * 3 2 1 7 7 C 1.37881 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00012 * 90.00683 * 10 9 7 12 12 O 1.21281 * 119.99799 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00167 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.64029 * 60.41074 * 13 11 10 15 15 C 1.53022 * 109.64010 * 299.99368 * 13 11 10 16 16 C 1.50059 * 110.14950 * 190.87807 * 15 13 11 17 17 C 1.29452 * 124.07349 * 17.13248 * 16 15 13 18 18 C 1.50070 * 124.07339 * 359.78991 * 17 16 15 19 19 C 1.52871 * 110.23038 * 16.69650 * 18 17 16 20 20 C 1.46498 * 120.00351 * 269.99956 * 10 9 7 21 21 C 1.53003 * 117.49752 * 8.75047 * 20 10 9 22 22 C 1.52999 * 117.50185 * 300.09280 * 20 10 9 23 23 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47184 * 60.00628 * 9 7 2 25 25 H 1.09003 * 109.47668 * 299.99732 * 9 7 2 26 26 H 1.09001 * 109.35565 * 70.67044 * 15 13 11 27 27 H 1.09000 * 109.24562 * 311.01824 * 15 13 11 28 28 H 1.08001 * 117.96596 * 197.10858 * 16 15 13 29 29 H 1.08002 * 117.95997 * 179.50355 * 17 16 15 30 30 H 1.09000 * 109.35530 * 137.07589 * 18 17 16 31 31 H 1.08992 * 109.35582 * 256.66432 * 18 17 16 32 32 H 1.08996 * 109.69651 * 191.10179 * 19 18 17 33 33 H 1.08993 * 109.44648 * 70.56066 * 19 18 17 34 34 H 1.08996 * 115.55287 * 154.41486 * 20 10 9 35 35 H 1.09007 * 117.49615 * 359.97438 * 21 20 10 36 36 H 1.08997 * 117.50288 * 145.01709 * 21 20 10 37 37 H 1.08996 * 117.50140 * 214.97659 * 22 20 10 38 38 H 1.09006 * 117.49878 * 359.97169 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6410 -4.1249 1.1677 12 8 2.2472 -3.6637 2.2180 13 6 3.6208 -5.2699 1.1678 14 1 4.5374 -4.9678 0.6612 15 6 3.0070 -6.4721 0.4469 16 6 3.8517 -7.6928 0.6662 17 6 4.7418 -7.8007 1.6000 18 6 5.0565 -6.7183 2.5907 19 6 3.9355 -5.6792 2.6122 20 6 2.6792 -4.1694 -1.2681 21 6 2.3108 -3.4208 -2.5507 22 6 1.6334 -4.7531 -2.2202 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8898 25 1 0.6241 -2.5568 0.8903 26 1 2.9472 -6.2611 -0.6208 27 1 2.0049 -6.6513 0.8364 28 1 3.7078 -8.5339 0.0041 29 1 5.2888 -8.7291 1.6732 30 1 5.1641 -7.1569 3.5828 31 1 5.9903 -6.2317 2.3096 32 1 4.2556 -4.8051 3.1792 33 1 3.0474 -6.1128 3.0719 34 1 3.6539 -4.6559 -1.2318 35 1 1.7138 -2.5142 -2.4504 36 1 3.0429 -3.4151 -3.3581 37 1 1.9202 -5.6234 -2.8104 38 1 0.5911 -4.7233 -1.9025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701297266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:39 Heat of formation + Delta-G solvation = -1.878040 kcal Electronic energy + Delta-G solvation = -18755.080169 eV Core-core repulsion = 15984.288721 eV Total energy + Delta-G solvation = -2770.791447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.87272 -37.58296 -36.60423 -33.21789 -32.06176 -31.06602 -30.65596 -27.29864 -23.93198 -23.26384 -22.30186 -21.89193 -21.19858 -18.31929 -17.76391 -16.93064 -16.36536 -15.85263 -15.19201 -14.38798 -14.30877 -14.07176 -13.76698 -13.42973 -13.07859 -12.87174 -12.39290 -12.09697 -12.02028 -11.70312 -11.39729 -11.02215 -10.93465 -10.71782 -10.69911 -10.52521 -10.33972 -10.21167 -10.09295 -10.03515 -9.49437 -8.95310 -8.75101 -8.42421 -7.50267 -6.03058 -4.07356 2.30322 3.30660 3.36317 3.38266 3.43199 3.86110 4.36557 4.47753 4.73050 4.82313 5.01407 5.21612 5.29346 5.30838 5.34261 5.37000 5.41585 5.47879 5.60028 5.65203 5.83647 5.93096 5.99190 6.03297 6.06467 6.21629 6.37825 6.44824 6.49995 6.68804 6.75094 6.96191 7.08323 7.45332 7.56265 7.93629 8.24913 8.45286 8.92328 9.12492 9.57542 11.04809 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.006533 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.359068 B = 4284.815412 C = 4856.891026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.244 3.756 10 N -0.570 5.570 11 C 0.513 3.487 12 O -0.539 6.539 13 C -0.106 4.106 14 H 0.090 0.910 15 C -0.089 4.089 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.091 4.091 19 C -0.099 4.099 20 C 0.077 3.923 21 C -0.177 4.177 22 C -0.204 4.204 23 H 0.263 0.737 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.967 -14.247 -2.506 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.125 3.875 10 N -0.299 5.299 11 C 0.300 3.700 12 O -0.416 6.416 13 C -0.128 4.128 14 H 0.109 0.891 15 C -0.126 4.126 16 C -0.168 4.168 17 C -0.178 4.178 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.029 4.029 21 C -0.214 4.214 22 C -0.243 4.243 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.574 -13.851 -1.922 15.903 hybrid contribution 0.475 0.898 -0.211 1.037 sum 8.048 -12.953 -2.133 15.398 Atomic orbital electron populations 1.69932 1.05967 1.26962 1.50627 1.24926 0.94853 0.99150 0.95182 0.86514 0.79882 0.83168 0.77975 1.20653 1.21141 1.19927 1.21404 0.93335 0.90502 1.50685 0.92465 1.19290 0.87631 0.82272 0.98340 1.47736 1.44982 1.34212 1.02999 1.20248 0.82262 0.83644 0.83814 1.90664 1.58241 1.61858 1.30824 1.21363 0.98797 0.94235 0.98377 0.89149 1.20642 0.98749 0.91664 1.01567 1.22066 0.97669 0.98483 0.98594 1.22065 0.99386 0.99184 0.97191 1.20463 0.98963 0.95179 0.98222 1.21366 0.98557 0.98666 0.95081 1.21535 0.96808 1.01791 0.82782 1.23383 1.03635 0.97032 0.97377 1.23432 0.99329 0.97300 1.04206 0.92759 0.94821 0.93935 0.89431 0.90551 0.87975 0.88277 0.91058 0.91046 0.90682 0.91387 0.86472 0.86364 0.88983 0.88994 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.71 9.18 -34.44 -0.32 -15.03 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 6.36 4.46 -5.20 -0.02 6.34 16 10 N -0.57 -12.15 2.79 -167.47 -0.47 -12.62 16 11 C 0.51 10.86 7.06 -10.98 -0.08 10.78 16 12 O -0.54 -13.77 15.48 5.56 0.09 -13.68 16 13 C -0.11 -1.66 1.78 -91.56 -0.16 -1.82 16 14 H 0.09 1.32 7.59 -51.93 -0.39 0.92 16 15 C -0.09 -1.17 4.93 -28.18 -0.14 -1.31 16 16 C -0.15 -1.67 9.80 -35.91 -0.35 -2.02 16 17 C -0.16 -1.72 9.81 -35.90 -0.35 -2.07 16 18 C -0.09 -1.03 6.11 -28.25 -0.17 -1.20 16 19 C -0.10 -1.45 4.69 -26.60 -0.12 -1.57 16 20 C 0.08 1.28 4.38 -67.93 -0.30 0.98 16 21 C -0.18 -2.89 9.72 -26.69 -0.26 -3.15 16 22 C -0.20 -2.95 9.53 -26.70 -0.25 -3.21 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.88 6.32 -51.93 -0.33 0.56 16 25 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 26 H 0.09 1.07 4.84 -51.93 -0.25 0.82 16 27 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 28 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 33 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 34 H 0.12 1.64 6.02 -51.93 -0.31 1.33 16 35 H 0.12 2.37 6.29 -51.92 -0.33 2.04 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -31.87 304.85 -8.46 -40.33 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.75 Total: 1.93 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.63 Total: -11.65 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.27 Total: -38.47 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.87 -8.46 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.451 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds