Wall clock time and date at job start Mon Mar 30 2020 07:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48504 * 109.47270 * 269.99546 * 3 2 1 5 5 H 1.48496 * 109.47462 * 29.99822 * 3 2 1 6 6 H 1.48506 * 109.47158 * 149.99454 * 3 2 1 7 7 C 1.37881 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00012 * 90.00683 * 10 9 7 12 12 O 1.21281 * 119.99799 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00167 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.64029 * 60.41074 * 13 11 10 15 15 C 1.53022 * 109.64010 * 299.99368 * 13 11 10 16 16 C 1.50059 * 110.14950 * 190.87807 * 15 13 11 17 17 C 1.29452 * 124.07349 * 17.13248 * 16 15 13 18 18 C 1.50070 * 124.07339 * 359.78991 * 17 16 15 19 19 C 1.52871 * 110.23038 * 16.69650 * 18 17 16 20 20 C 1.46498 * 120.00351 * 269.99956 * 10 9 7 21 21 C 1.53003 * 117.49752 * 8.75047 * 20 10 9 22 22 C 1.52999 * 117.50185 * 300.09280 * 20 10 9 23 23 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47184 * 60.00628 * 9 7 2 25 25 H 1.09003 * 109.47668 * 299.99732 * 9 7 2 26 26 H 1.09001 * 109.35565 * 70.67044 * 15 13 11 27 27 H 1.09000 * 109.24562 * 311.01824 * 15 13 11 28 28 H 1.08001 * 117.96596 * 197.10858 * 16 15 13 29 29 H 1.08002 * 117.95997 * 179.50355 * 17 16 15 30 30 H 1.09000 * 109.35530 * 137.07589 * 18 17 16 31 31 H 1.08992 * 109.35582 * 256.66432 * 18 17 16 32 32 H 1.08996 * 109.69651 * 191.10179 * 19 18 17 33 33 H 1.08993 * 109.44648 * 70.56066 * 19 18 17 34 34 H 1.08996 * 115.55287 * 154.41486 * 20 10 9 35 35 H 1.09007 * 117.49615 * 359.97438 * 21 20 10 36 36 H 1.08997 * 117.50288 * 145.01709 * 21 20 10 37 37 H 1.08996 * 117.50140 * 214.97659 * 22 20 10 38 38 H 1.09006 * 117.49878 * 359.97169 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6410 -4.1249 1.1677 12 8 2.2472 -3.6637 2.2180 13 6 3.6208 -5.2699 1.1678 14 1 4.5374 -4.9678 0.6612 15 6 3.0070 -6.4721 0.4469 16 6 3.8517 -7.6928 0.6662 17 6 4.7418 -7.8007 1.6000 18 6 5.0565 -6.7183 2.5907 19 6 3.9355 -5.6792 2.6122 20 6 2.6792 -4.1694 -1.2681 21 6 2.3108 -3.4208 -2.5507 22 6 1.6334 -4.7531 -2.2202 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8898 25 1 0.6241 -2.5568 0.8903 26 1 2.9472 -6.2611 -0.6208 27 1 2.0049 -6.6513 0.8364 28 1 3.7078 -8.5339 0.0041 29 1 5.2888 -8.7291 1.6732 30 1 5.1641 -7.1569 3.5828 31 1 5.9903 -6.2317 2.3096 32 1 4.2556 -4.8051 3.1792 33 1 3.0474 -6.1128 3.0719 34 1 3.6539 -4.6559 -1.2318 35 1 1.7138 -2.5142 -2.4504 36 1 3.0429 -3.4151 -3.3581 37 1 1.9202 -5.6234 -2.8104 38 1 0.5911 -4.7233 -1.9025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701297266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:39 Heat of formation + Delta-G solvation = -20.983072 kcal Electronic energy + Delta-G solvation = -18755.908625 eV Core-core repulsion = 15984.288721 eV Total energy + Delta-G solvation = -2771.619903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36693 -38.80102 -38.12715 -35.25197 -33.81339 -32.31653 -31.68607 -29.27350 -25.60524 -24.63036 -23.63950 -23.13143 -22.64007 -19.84843 -18.87886 -18.54275 -18.30319 -17.23109 -16.77512 -16.17172 -15.71819 -15.46063 -15.11615 -14.70237 -14.38562 -14.19906 -13.93415 -13.46912 -13.38295 -13.16821 -13.07446 -12.82768 -12.63293 -12.23974 -12.20591 -12.15650 -11.91014 -11.64043 -11.43235 -11.36404 -11.19449 -10.65514 -10.42275 -9.79152 -9.25173 -8.23110 -6.37826 1.34115 1.37242 1.47426 1.49383 1.75450 2.22548 2.40718 3.05533 3.07878 3.52274 3.77305 3.88363 3.92812 4.04876 4.21018 4.21439 4.34141 4.44912 4.49652 4.65214 4.80516 4.84947 4.86673 4.97753 5.02059 5.06573 5.10708 5.18463 5.25969 5.30349 5.37741 5.41535 5.55081 5.82378 5.84842 6.05003 6.13092 6.68377 6.78786 7.26817 7.45978 8.83542 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.006533 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.359068 B = 4284.815412 C = 4856.891026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.262 3.738 10 N -0.576 5.576 11 C 0.501 3.499 12 O -0.598 6.598 13 C -0.094 4.094 14 H 0.110 0.890 15 C -0.083 4.083 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.087 4.087 19 C -0.100 4.100 20 C 0.059 3.941 21 C -0.185 4.185 22 C -0.177 4.177 23 H 0.267 0.733 24 H 0.026 0.974 25 H -0.010 1.010 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.515 -16.117 -4.186 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.141 3.859 10 N -0.304 5.304 11 C 0.290 3.710 12 O -0.480 6.480 13 C -0.115 4.115 14 H 0.128 0.872 15 C -0.120 4.120 16 C -0.174 4.174 17 C -0.175 4.175 18 C -0.123 4.123 19 C -0.138 4.138 20 C -0.045 4.045 21 C -0.223 4.223 22 C -0.215 4.215 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.009 0.991 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.138 -15.753 -3.647 19.085 hybrid contribution -0.379 1.482 0.335 1.566 sum 9.760 -14.271 -3.312 17.604 Atomic orbital electron populations 1.70053 1.07551 1.28100 1.51215 1.25838 0.95762 1.02963 0.94518 0.85433 0.78233 0.78418 0.78842 1.18668 1.20658 1.19899 1.21606 0.93025 0.91756 1.50852 0.93159 1.18688 0.88024 0.83843 0.95324 1.47724 1.44121 1.33135 1.05432 1.21394 0.82403 0.84440 0.82726 1.90621 1.60492 1.63946 1.32899 1.21362 0.97597 0.92837 0.99740 0.87232 1.20601 0.98177 0.91477 1.01777 1.22097 0.97531 0.98073 0.99676 1.22256 0.99381 0.99697 0.96199 1.20460 0.97656 0.94494 0.99735 1.21359 0.99398 0.98947 0.94096 1.22027 0.99100 1.02817 0.80601 1.23355 1.04431 0.96201 0.98300 1.23484 0.97579 0.97884 1.02547 0.92443 0.95612 0.99143 0.88021 0.92387 0.85348 0.85531 0.89529 0.89796 0.92968 0.93033 0.82821 0.90877 0.85450 0.84210 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.53 -31.45 9.18 25.60 0.24 -31.21 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.26 14.58 4.46 85.63 0.38 14.96 16 10 N -0.58 -25.35 2.79 -802.14 -2.24 -27.59 16 11 C 0.50 22.01 7.06 87.66 0.62 22.63 16 12 O -0.60 -32.76 15.48 -3.03 -0.05 -32.80 16 13 C -0.09 -2.86 1.78 -11.40 -0.02 -2.88 16 14 H 0.11 2.92 7.59 -2.39 -0.02 2.91 16 15 C -0.08 -2.00 4.93 29.65 0.15 -1.85 16 16 C -0.16 -2.85 9.80 27.03 0.26 -2.59 16 17 C -0.16 -2.74 9.81 27.03 0.27 -2.47 16 18 C -0.09 -1.72 6.11 29.61 0.18 -1.54 16 19 C -0.10 -2.92 4.69 30.68 0.14 -2.77 16 20 C 0.06 1.85 4.38 44.99 0.20 2.05 16 21 C -0.19 -5.82 9.72 30.62 0.30 -5.53 16 22 C -0.18 -4.72 9.53 30.62 0.29 -4.43 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.03 1.45 6.32 -2.38 -0.02 1.44 16 25 H -0.01 -0.62 7.42 -2.39 -0.02 -0.64 16 26 H 0.10 2.12 4.84 -2.39 -0.01 2.10 16 27 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.73 7.89 -2.39 -0.02 1.71 16 33 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 34 H 0.15 3.74 6.02 -2.39 -0.01 3.73 16 35 H 0.07 3.01 6.29 -2.38 -0.01 3.00 16 36 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.30 8.12 -2.38 -0.02 2.28 16 Total: -1.00 -75.08 304.85 4.52 -70.56 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.03 Total: 13.65 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.47 Total: -14.70 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.96 Total: -84.52 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.80 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.08 4.52 -70.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.578 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds