Wall clock time and date at job start Mon Mar 30 2020 07:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00568 * 2 1 4 4 H 1.48507 * 109.46773 * 269.99545 * 3 2 1 5 5 H 1.48498 * 109.47121 * 149.99668 * 3 2 1 6 6 H 1.48496 * 109.46938 * 29.99333 * 3 2 1 7 7 C 1.37888 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99677 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99651 * 90.00196 * 10 9 7 12 12 O 1.21275 * 120.00007 * 354.81810 * 11 10 9 13 13 C 1.50699 * 119.99969 * 174.81589 * 11 10 9 14 14 H 1.08999 * 109.63988 * 334.46915 * 13 11 10 15 15 C 1.53022 * 109.64358 * 94.88808 * 13 11 10 16 16 C 1.50066 * 110.14935 * 169.11936 * 15 13 11 17 17 C 1.29446 * 124.07521 * 342.87203 * 16 15 13 18 18 C 1.50059 * 124.07438 * 0.48558 * 17 16 15 19 19 C 1.52978 * 110.29100 * 342.98470 * 18 17 16 20 20 C 1.46498 * 120.00518 * 270.00463 * 10 9 7 21 21 C 1.53005 * 117.49723 * 13.53294 * 20 10 9 22 22 C 1.53000 * 117.49720 * 304.91061 * 20 10 9 23 23 H 0.96993 * 120.00327 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47675 * 299.99936 * 9 7 2 25 25 H 1.09006 * 109.47100 * 60.00370 * 9 7 2 26 26 H 1.09001 * 109.35937 * 289.33230 * 15 13 11 27 27 H 1.09001 * 109.36068 * 49.04885 * 15 13 11 28 28 H 1.08007 * 117.95933 * 162.89204 * 16 15 13 29 29 H 1.07998 * 117.95905 * 180.46964 * 17 16 15 30 30 H 1.09009 * 109.35563 * 103.05565 * 18 17 16 31 31 H 1.09002 * 109.36163 * 222.77415 * 18 17 16 32 32 H 1.09001 * 109.46528 * 289.53635 * 19 18 17 33 33 H 1.08997 * 109.79370 * 168.92004 * 19 18 17 34 34 H 1.08997 * 115.55110 * 159.23880 * 20 10 9 35 35 H 1.08997 * 117.49705 * 359.97438 * 21 20 10 36 36 H 1.08994 * 117.50069 * 145.01958 * 21 20 10 37 37 H 1.08998 * 117.49568 * 214.97380 * 22 20 10 38 38 H 1.08996 * 117.49858 * 359.97291 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4002 5 1 3.5468 1.4400 0.7001 6 1 1.4468 2.6526 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 2.6405 -4.1250 1.1678 12 8 2.3210 -3.6053 2.2159 13 6 3.5270 -5.3437 1.1706 14 1 3.3523 -5.9259 0.2658 15 6 4.9941 -4.9125 1.2294 16 6 5.8715 -6.0997 1.4986 17 6 5.4417 -7.2283 1.9649 18 6 4.0045 -7.5104 2.2914 19 6 3.2193 -6.2023 2.4038 20 6 2.6788 -4.1696 -1.2681 21 6 2.4074 -3.3631 -2.5397 22 6 1.6254 -4.6499 -2.2683 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6238 -2.5567 0.8902 25 1 0.6246 -2.5571 -0.8898 26 1 5.2769 -4.4626 0.2776 27 1 5.1241 -4.1813 2.0272 28 1 6.9273 -6.0067 1.2908 29 1 6.1624 -8.0158 2.1288 30 1 3.5683 -8.1232 1.5024 31 1 3.9477 -8.0469 3.2385 32 1 3.5250 -5.6715 3.3054 33 1 2.1512 -6.4154 2.4447 34 1 3.6139 -4.7271 -1.2154 35 1 1.8743 -2.4185 -2.4323 36 1 3.1641 -3.3898 -3.3237 37 1 1.8677 -5.5232 -2.8739 38 1 0.5782 -4.5520 -1.9823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701297268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:44 Heat of formation + Delta-G solvation = -7.825374 kcal Electronic energy + Delta-G solvation = -18722.647219 eV Core-core repulsion = 15951.597876 eV Total energy + Delta-G solvation = -2771.049343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.86946 -37.76341 -36.58878 -33.48921 -32.09933 -31.09265 -30.72425 -27.01632 -23.84997 -23.16871 -22.41995 -21.94644 -21.42267 -18.52014 -17.78695 -17.02465 -16.75313 -15.90358 -15.02894 -14.67137 -14.09776 -14.01553 -13.72430 -13.50436 -13.16037 -12.92251 -12.59864 -12.21515 -12.05013 -11.82429 -11.46869 -11.03743 -10.96885 -10.78143 -10.66312 -10.57026 -10.50668 -10.31235 -10.11616 -10.09780 -9.00799 -8.99643 -8.84580 -8.37261 -7.50118 -6.36639 -4.08281 2.26652 3.26048 3.42697 3.48974 3.63742 3.75399 4.32962 4.54969 4.67107 4.81524 4.91784 5.13307 5.22630 5.28078 5.31250 5.32564 5.38546 5.44925 5.56262 5.56841 5.74979 5.86466 5.91087 5.96633 6.04978 6.14368 6.23570 6.37236 6.42099 6.63057 6.68990 6.82480 6.92384 7.11627 7.40934 8.04995 8.31233 8.46587 8.79246 9.02728 9.60628 11.00126 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.006516 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.702965 B = 4295.982840 C = 4652.624952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.598 4.598 8 H 0.052 0.948 9 C 0.234 3.766 10 N -0.567 5.567 11 C 0.514 3.486 12 O -0.536 6.536 13 C -0.106 4.106 14 H 0.088 0.912 15 C -0.080 4.080 16 C -0.147 4.147 17 C -0.161 4.161 18 C -0.090 4.090 19 C -0.101 4.101 20 C 0.076 3.924 21 C -0.175 4.175 22 C -0.203 4.203 23 H 0.267 0.733 24 H 0.031 0.969 25 H 0.023 0.977 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 -14.298 -2.045 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.637 4.637 8 H 0.070 0.930 9 C 0.115 3.885 10 N -0.296 5.296 11 C 0.301 3.699 12 O -0.413 6.413 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.118 4.118 16 C -0.165 4.165 17 C -0.179 4.179 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.031 4.031 21 C -0.213 4.213 22 C -0.242 4.242 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.622 -12.345 -1.460 15.129 hybrid contribution 0.320 -1.680 -0.192 1.721 sum 8.942 -14.025 -1.652 16.716 Atomic orbital electron populations 1.70777 1.06805 1.30381 1.46769 1.25790 0.96431 1.02556 0.93731 0.83484 0.74757 0.75011 0.76624 1.21451 1.21536 1.20925 1.22228 0.94652 0.91460 1.55330 0.92987 1.19331 0.88240 0.84017 0.96917 1.47589 1.44774 1.34002 1.03227 1.20277 0.81130 0.84812 0.83710 1.90667 1.57890 1.61688 1.31094 1.21396 0.95241 0.95628 1.00540 0.89419 1.20366 0.91778 0.96761 1.02875 1.22045 0.99412 0.94919 1.00158 1.22031 0.97162 0.97710 1.00966 1.20458 0.92901 0.97727 1.01570 1.21423 1.00047 0.94739 0.97649 1.21525 0.97498 1.01783 0.82246 1.23349 1.03123 0.97111 0.97728 1.23383 0.98474 0.98433 1.03942 0.92310 0.95140 0.95927 0.90622 0.89937 0.87820 0.88112 0.91014 0.90970 0.90744 0.91445 0.86326 0.86436 0.88867 0.88893 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.82 13.65 55.43 0.76 -27.07 16 2 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 3 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.60 -17.09 8.92 -34.44 -0.31 -17.40 16 8 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.23 6.12 3.70 -5.20 -0.02 6.10 16 10 N -0.57 -12.26 2.81 -167.47 -0.47 -12.73 16 11 C 0.51 10.94 6.66 -10.98 -0.07 10.87 16 12 O -0.54 -13.82 16.05 5.56 0.09 -13.73 16 13 C -0.11 -1.66 1.76 -91.56 -0.16 -1.82 16 14 H 0.09 1.22 6.47 -51.93 -0.34 0.88 16 15 C -0.08 -1.15 5.38 -28.18 -0.15 -1.30 16 16 C -0.15 -1.71 9.80 -35.90 -0.35 -2.07 16 17 C -0.16 -1.73 9.81 -35.90 -0.35 -2.09 16 18 C -0.09 -0.98 6.11 -28.20 -0.17 -1.15 16 19 C -0.10 -1.44 4.85 -26.54 -0.13 -1.56 16 20 C 0.08 1.29 5.71 -67.93 -0.39 0.90 16 21 C -0.18 -2.94 9.72 -26.73 -0.26 -3.20 16 22 C -0.20 -3.06 10.02 -26.73 -0.27 -3.33 16 23 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 24 H 0.03 0.90 7.37 -51.93 -0.38 0.52 16 25 H 0.02 0.59 6.11 -51.93 -0.32 0.27 16 26 H 0.08 1.03 7.64 -51.93 -0.40 0.63 16 27 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 28 H 0.10 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.12 1.69 6.10 -51.93 -0.32 1.38 16 35 H 0.12 2.41 6.29 -51.93 -0.33 2.08 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.53 7.83 -51.93 -0.41 1.13 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -32.86 307.46 -8.59 -41.44 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.78 Total: 2.26 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.73 Total: -15.59 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.29 Total: -39.80 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.86 -8.59 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.619 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds