Wall clock time and date at job start Mon Mar 30 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00568 * 2 1 4 4 H 1.48507 * 109.46773 * 269.99545 * 3 2 1 5 5 H 1.48498 * 109.47121 * 149.99668 * 3 2 1 6 6 H 1.48496 * 109.46938 * 29.99333 * 3 2 1 7 7 C 1.37888 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99677 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99651 * 90.00196 * 10 9 7 12 12 O 1.21275 * 120.00007 * 354.81810 * 11 10 9 13 13 C 1.50699 * 119.99969 * 174.81589 * 11 10 9 14 14 H 1.08999 * 109.63988 * 334.46915 * 13 11 10 15 15 C 1.53022 * 109.64358 * 94.88808 * 13 11 10 16 16 C 1.50066 * 110.14935 * 169.11936 * 15 13 11 17 17 C 1.29446 * 124.07521 * 342.87203 * 16 15 13 18 18 C 1.50059 * 124.07438 * 0.48558 * 17 16 15 19 19 C 1.52978 * 110.29100 * 342.98470 * 18 17 16 20 20 C 1.46498 * 120.00518 * 270.00463 * 10 9 7 21 21 C 1.53005 * 117.49723 * 13.53294 * 20 10 9 22 22 C 1.53000 * 117.49720 * 304.91061 * 20 10 9 23 23 H 0.96993 * 120.00327 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47675 * 299.99936 * 9 7 2 25 25 H 1.09006 * 109.47100 * 60.00370 * 9 7 2 26 26 H 1.09001 * 109.35937 * 289.33230 * 15 13 11 27 27 H 1.09001 * 109.36068 * 49.04885 * 15 13 11 28 28 H 1.08007 * 117.95933 * 162.89204 * 16 15 13 29 29 H 1.07998 * 117.95905 * 180.46964 * 17 16 15 30 30 H 1.09009 * 109.35563 * 103.05565 * 18 17 16 31 31 H 1.09002 * 109.36163 * 222.77415 * 18 17 16 32 32 H 1.09001 * 109.46528 * 289.53635 * 19 18 17 33 33 H 1.08997 * 109.79370 * 168.92004 * 19 18 17 34 34 H 1.08997 * 115.55110 * 159.23880 * 20 10 9 35 35 H 1.08997 * 117.49705 * 359.97438 * 21 20 10 36 36 H 1.08994 * 117.50069 * 145.01958 * 21 20 10 37 37 H 1.08998 * 117.49568 * 214.97380 * 22 20 10 38 38 H 1.08996 * 117.49858 * 359.97291 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4002 5 1 3.5468 1.4400 0.7001 6 1 1.4468 2.6526 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 2.6405 -4.1250 1.1678 12 8 2.3210 -3.6053 2.2159 13 6 3.5270 -5.3437 1.1706 14 1 3.3523 -5.9259 0.2658 15 6 4.9941 -4.9125 1.2294 16 6 5.8715 -6.0997 1.4986 17 6 5.4417 -7.2283 1.9649 18 6 4.0045 -7.5104 2.2914 19 6 3.2193 -6.2023 2.4038 20 6 2.6788 -4.1696 -1.2681 21 6 2.4074 -3.3631 -2.5397 22 6 1.6254 -4.6499 -2.2683 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6238 -2.5567 0.8902 25 1 0.6246 -2.5571 -0.8898 26 1 5.2769 -4.4626 0.2776 27 1 5.1241 -4.1813 2.0272 28 1 6.9273 -6.0067 1.2908 29 1 6.1624 -8.0158 2.1288 30 1 3.5683 -8.1232 1.5024 31 1 3.9477 -8.0469 3.2385 32 1 3.5250 -5.6715 3.3054 33 1 2.1512 -6.4154 2.4447 34 1 3.6139 -4.7271 -1.2154 35 1 1.8743 -2.4185 -2.4323 36 1 3.1641 -3.3898 -3.3237 37 1 1.8677 -5.5232 -2.8739 38 1 0.5782 -4.5520 -1.9823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701297268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:43 Heat of formation + Delta-G solvation = -27.718414 kcal Electronic energy + Delta-G solvation = -18723.509846 eV Core-core repulsion = 15951.597876 eV Total energy + Delta-G solvation = -2771.911970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40217 -39.01678 -38.11106 -35.57538 -33.86791 -32.32077 -31.75428 -29.00426 -25.61365 -24.57627 -23.75027 -23.24033 -22.89492 -20.12344 -18.95034 -18.89333 -18.35058 -17.20126 -16.59718 -16.19114 -15.69517 -15.50727 -15.29128 -14.70271 -14.67831 -14.33685 -13.92108 -13.59021 -13.54648 -13.25415 -13.20676 -12.87697 -12.53336 -12.33290 -12.24361 -12.01867 -11.93607 -11.76207 -11.48250 -11.29032 -11.06375 -10.63695 -10.50994 -9.87329 -9.33348 -8.69722 -6.45888 1.41714 1.45553 1.56187 1.63204 1.73774 2.12482 2.50590 2.99652 3.07364 3.44326 3.74766 3.77221 3.82241 3.94924 4.10599 4.13021 4.28109 4.37838 4.42416 4.59956 4.63669 4.67551 4.77133 4.79656 4.86196 4.92981 5.01059 5.04950 5.11656 5.21661 5.31128 5.31910 5.52374 5.77619 5.79443 6.06038 6.12222 6.42453 6.64642 7.25158 7.37387 8.63282 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.006516 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.702965 B = 4295.982840 C = 4652.624952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.032 4.032 3 Si 1.119 2.881 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.604 4.604 8 H 0.041 0.959 9 C 0.250 3.750 10 N -0.574 5.574 11 C 0.502 3.498 12 O -0.596 6.596 13 C -0.093 4.093 14 H 0.116 0.884 15 C -0.078 4.078 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.085 4.085 19 C -0.102 4.102 20 C 0.056 3.944 21 C -0.183 4.183 22 C -0.178 4.178 23 H 0.253 0.747 24 H -0.015 1.015 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.157 0.843 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.490 -16.552 -3.606 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.230 4.230 3 Si 0.940 3.060 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.642 4.642 8 H 0.060 0.940 9 C 0.128 3.872 10 N -0.303 5.303 11 C 0.292 3.708 12 O -0.477 6.477 13 C -0.114 4.114 14 H 0.134 0.866 15 C -0.115 4.115 16 C -0.178 4.178 17 C -0.168 4.168 18 C -0.122 4.122 19 C -0.140 4.140 20 C -0.048 4.048 21 C -0.221 4.221 22 C -0.216 4.216 23 H 0.063 0.937 24 H 0.003 0.997 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.117 -14.646 -3.067 18.641 hybrid contribution -0.518 -1.018 0.311 1.184 sum 10.599 -15.664 -2.756 19.113 Atomic orbital electron populations 1.70900 1.07713 1.29594 1.48672 1.27327 0.96525 1.06452 0.92658 0.82907 0.73768 0.71090 0.78193 1.18598 1.20595 1.20723 1.22431 0.94166 0.92804 1.54814 0.94019 1.18801 0.88650 0.85318 0.94437 1.47644 1.43968 1.32967 1.05675 1.21456 0.80842 0.85924 0.82560 1.90623 1.60139 1.63803 1.33182 1.21409 0.94694 0.92883 1.02408 0.86642 1.20324 0.91189 0.97758 1.02263 1.21997 0.99908 0.94021 1.01838 1.22287 0.97363 0.98074 0.99059 1.20490 0.92688 0.95617 1.03384 1.21440 1.00219 0.96356 0.96005 1.22038 0.99811 1.02781 0.80178 1.23317 1.04280 0.95874 0.98628 1.23446 0.96701 0.99046 1.02417 0.93749 0.99722 0.96178 0.89980 0.92979 0.85680 0.85156 0.88968 0.89201 0.93137 0.92423 0.82584 0.91035 0.85241 0.84160 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.09 13.65 21.45 0.29 -58.80 16 2 C -0.03 -1.90 5.46 84.66 0.46 -1.43 16 3 Si 1.12 52.61 29.90 68.60 2.05 54.66 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.60 -35.97 8.92 25.60 0.23 -35.74 16 8 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 9 C 0.25 13.82 3.70 85.63 0.32 14.13 16 10 N -0.57 -25.55 2.81 -802.15 -2.25 -27.80 16 11 C 0.50 22.14 6.66 87.66 0.58 22.73 16 12 O -0.60 -32.82 16.05 -3.01 -0.05 -32.87 16 13 C -0.09 -2.81 1.76 -11.40 -0.02 -2.83 16 14 H 0.12 2.84 6.47 -2.39 -0.02 2.83 16 15 C -0.08 -2.12 5.38 29.66 0.16 -1.96 16 16 C -0.16 -3.20 9.80 27.03 0.27 -2.93 16 17 C -0.15 -2.60 9.81 27.03 0.27 -2.34 16 18 C -0.09 -1.56 6.11 29.64 0.18 -1.38 16 19 C -0.10 -2.85 4.85 30.72 0.15 -2.70 16 20 C 0.06 1.81 5.71 44.99 0.26 2.07 16 21 C -0.18 -5.89 9.72 30.60 0.30 -5.59 16 22 C -0.18 -4.92 10.02 30.60 0.31 -4.61 16 23 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 24 H -0.02 -0.97 7.37 -2.39 -0.02 -0.99 16 25 H 0.02 1.12 6.11 -2.38 -0.01 1.11 16 26 H 0.08 2.08 7.64 -2.39 -0.02 2.06 16 27 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 28 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.16 3.87 6.10 -2.39 -0.01 3.85 16 35 H 0.07 3.01 6.29 -2.39 -0.02 2.99 16 36 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.07 2.32 7.83 -2.39 -0.02 2.30 16 Total: -1.00 -77.48 307.46 4.63 -72.85 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.13 Total: 14.54 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 3.45 Total: -22.59 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.96 Total: -86.60 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.05 Total: -32.87 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -77.48 4.63 -72.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.130 kcal (2) G-P(sol) polarization free energy of solvation -77.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds