Wall clock time and date at job start Mon Mar 30 2020 07:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00201 * 2 1 4 4 H 1.48498 * 109.47094 * 269.99388 * 3 2 1 5 5 H 1.48505 * 109.46938 * 29.99977 * 3 2 1 6 6 H 1.48505 * 109.46944 * 149.99499 * 3 2 1 7 7 C 1.37880 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00022 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99627 * 90.00426 * 10 9 7 12 12 O 1.21272 * 120.00204 * 355.45089 * 11 10 9 13 13 C 1.50707 * 119.99479 * 175.73036 * 11 10 9 14 14 C 1.53003 * 109.46525 * 173.93098 * 13 11 10 15 15 H 1.08992 * 110.35051 * 55.83198 * 14 13 11 16 16 C 1.51108 * 110.38792 * 293.54047 * 14 13 11 17 17 C 1.30516 * 111.10618 * 224.75691 * 16 14 13 18 18 C 1.51105 * 111.10833 * 0.02562 * 17 16 14 19 19 C 1.54633 * 110.38350 * 178.24498 * 14 13 11 20 20 C 1.46501 * 120.00103 * 269.99953 * 10 9 7 21 21 C 1.52997 * 117.50021 * 11.45473 * 20 10 9 22 22 C 1.53002 * 117.50027 * 302.79622 * 20 10 9 23 23 H 0.96995 * 119.99765 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47510 * 60.00045 * 9 7 2 25 25 H 1.09000 * 109.47378 * 299.99780 * 9 7 2 26 26 H 1.08998 * 109.46832 * 293.92324 * 13 11 10 27 27 H 1.08989 * 109.47301 * 53.93091 * 13 11 10 28 28 H 1.08002 * 124.44289 * 44.73340 * 16 14 13 29 29 H 1.08000 * 124.45008 * 180.02562 * 17 16 14 30 30 H 1.08997 * 110.38937 * 135.24565 * 18 17 16 31 31 H 1.09007 * 110.38361 * 257.51607 * 18 17 16 32 32 H 1.09008 * 111.03238 * 261.47393 * 19 14 13 33 33 H 1.08996 * 111.04263 * 25.40541 * 19 14 13 34 34 H 1.09001 * 115.54967 * 157.12682 * 20 10 9 35 35 H 1.08999 * 117.49828 * 359.97438 * 21 20 10 36 36 H 1.09001 * 117.50217 * 145.02089 * 21 20 10 37 37 H 1.08996 * 117.49609 * 214.98252 * 22 20 10 38 38 H 1.08997 * 117.49788 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6408 -4.1249 1.1678 12 8 2.3118 -3.6121 2.2164 13 6 3.5442 -5.3312 1.1695 14 6 4.0135 -5.6146 2.5980 15 1 3.1571 -5.7368 3.2611 16 6 4.9054 -4.4987 3.0902 17 6 5.9619 -4.9724 3.6926 18 6 5.9512 -6.4834 3.7021 19 6 4.9076 -6.8758 2.6309 20 6 2.6790 -4.1695 -1.2682 21 6 2.3649 -3.3874 -2.5450 22 6 1.6277 -4.6955 -2.2476 23 1 -0.4849 0.8400 -0.0004 24 1 0.6246 -2.5572 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.9985 -6.1943 0.7884 27 1 4.4088 -5.1385 0.5346 28 1 4.6963 -3.4471 2.9603 29 1 6.7415 -4.3644 4.1273 30 1 6.9341 -6.8718 3.4356 31 1 5.6496 -6.8548 4.6816 32 1 4.3376 -7.7515 2.9418 33 1 5.3833 -7.0436 1.6647 34 1 3.6322 -4.6962 -1.2223 35 1 1.8037 -2.4587 -2.4412 36 1 3.1112 -3.3998 -3.3394 37 1 1.8895 -5.5679 -2.8461 38 1 0.5820 -4.6276 -1.9477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701301163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:19 Heat of formation + Delta-G solvation = -16.304912 kcal Electronic energy + Delta-G solvation = -18407.826062 eV Core-core repulsion = 15636.409019 eV Total energy + Delta-G solvation = -2771.417043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.05937 -39.36390 -38.07024 -35.24787 -33.76537 -32.53020 -29.83006 -29.43539 -26.48239 -24.66432 -23.27384 -22.98609 -21.32627 -20.07032 -19.26790 -18.62411 -18.18628 -17.16012 -16.80619 -16.48026 -16.03280 -15.56482 -15.29328 -14.83880 -14.48330 -13.77762 -13.41697 -13.38635 -12.97556 -12.75953 -12.68520 -12.63631 -12.57391 -12.24568 -12.21154 -12.12864 -12.02265 -11.94696 -11.64476 -11.47641 -11.32144 -10.66151 -10.45790 -9.76473 -9.21190 -8.23206 -6.37502 1.32298 1.35423 1.40490 1.45617 1.83191 2.26393 2.41831 3.05095 3.12018 3.59616 3.77750 3.92629 4.00337 4.03969 4.07992 4.23414 4.42394 4.51971 4.61687 4.71338 4.80112 4.87383 4.89736 5.00841 5.01302 5.07250 5.12277 5.18555 5.26381 5.35583 5.42544 5.48062 5.55793 5.72403 5.84924 6.00323 6.05711 6.69306 6.83936 7.27995 7.52636 8.83134 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.006618 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.910462 B = 4229.998695 C = 5070.719872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.264 3.736 10 N -0.583 5.583 11 C 0.495 3.505 12 O -0.593 6.593 13 C -0.114 4.114 14 C -0.056 4.056 15 H 0.063 0.937 16 C -0.173 4.173 17 C -0.171 4.171 18 C -0.095 4.095 19 C -0.110 4.110 20 C 0.060 3.940 21 C -0.188 4.188 22 C -0.178 4.178 23 H 0.266 0.734 24 H 0.023 0.977 25 H -0.010 1.010 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.727 -15.726 -1.873 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.143 3.857 10 N -0.312 5.312 11 C 0.285 3.715 12 O -0.474 6.474 13 C -0.154 4.154 14 C -0.074 4.074 15 H 0.081 0.919 16 C -0.192 4.192 17 C -0.189 4.189 18 C -0.132 4.132 19 C -0.147 4.147 20 C -0.044 4.044 21 C -0.225 4.225 22 C -0.216 4.216 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.008 0.992 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.176 0.824 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.386 -15.345 -1.331 19.154 hybrid contribution -0.440 1.859 0.266 1.929 sum 10.945 -13.486 -1.065 17.402 Atomic orbital electron populations 1.70051 1.07490 1.28029 1.51396 1.25824 0.95763 1.02901 0.94649 0.85466 0.78221 0.78603 0.78841 1.18648 1.20598 1.20068 1.21588 0.92893 0.91828 1.50517 0.93399 1.18639 0.87976 0.83997 0.95125 1.47806 1.44384 1.33398 1.05638 1.21528 0.81313 0.86094 0.82588 1.90634 1.60190 1.63649 1.32892 1.21763 0.99085 0.95227 0.99306 1.20850 0.97671 0.94360 0.94564 0.91855 1.23239 0.96728 0.98249 1.00954 1.23531 0.97753 0.98023 0.99563 1.21382 1.00510 0.91553 0.99745 1.22556 0.96109 0.95610 1.00409 1.22039 0.99465 1.02573 0.80370 1.23315 1.04433 0.96072 0.98725 1.23431 0.97093 0.98369 1.02724 0.92480 0.95880 0.99191 0.86146 0.87286 0.89925 0.85381 0.89106 0.90191 0.89173 0.88996 0.82372 0.91044 0.85544 0.84324 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.53 -31.45 9.04 25.60 0.23 -31.22 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.26 14.72 4.40 85.63 0.38 15.10 16 10 N -0.58 -25.61 2.80 -802.13 -2.25 -27.85 16 11 C 0.49 21.21 7.35 87.66 0.64 21.86 16 12 O -0.59 -31.78 14.56 -3.00 -0.04 -31.82 16 13 C -0.11 -3.20 3.92 29.85 0.12 -3.08 16 14 C -0.06 -1.56 2.54 -10.85 -0.03 -1.58 16 15 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 16 C -0.17 -5.56 9.23 26.27 0.24 -5.31 16 17 C -0.17 -4.23 10.77 26.27 0.28 -3.95 16 18 C -0.10 -1.70 6.81 30.53 0.21 -1.50 16 19 C -0.11 -1.95 6.71 31.70 0.21 -1.74 16 20 C 0.06 1.89 6.04 44.99 0.27 2.16 16 21 C -0.19 -6.01 9.73 30.62 0.30 -5.71 16 22 C -0.18 -4.86 10.06 30.62 0.31 -4.56 16 23 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 24 H 0.02 1.31 6.27 -2.38 -0.01 1.30 16 25 H -0.01 -0.65 7.49 -2.39 -0.02 -0.67 16 26 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.11 2.55 7.10 -2.39 -0.02 2.53 16 28 H 0.08 3.34 7.51 -2.91 -0.02 3.32 16 29 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.09 1.30 7.91 -2.39 -0.02 1.28 16 34 H 0.16 3.65 6.54 -2.39 -0.02 3.64 16 35 H 0.07 3.01 6.29 -2.39 -0.02 2.99 16 36 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.07 2.29 7.96 -2.39 -0.02 2.27 16 Total: -1.00 -76.88 311.59 4.68 -72.21 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.03 Total: 15.09 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.63 Total: -18.65 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -1.96 Total: -85.18 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.04 Total: -31.82 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -76.88 4.68 -72.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701301163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.901 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds