Wall clock time and date at job start Mon Mar 30 2020 07:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48497 * 109.47259 * 269.99958 * 3 2 1 5 5 H 1.48500 * 109.47254 * 30.00364 * 3 2 1 6 6 H 1.48511 * 109.46810 * 150.00039 * 3 2 1 7 7 C 1.37876 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99182 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00616 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00305 * 89.99948 * 10 9 7 12 12 O 1.21281 * 119.99516 * 5.29177 * 11 10 9 13 13 C 1.50696 * 120.00295 * 185.28089 * 11 10 9 14 14 C 1.53008 * 109.47176 * 175.83400 * 13 11 10 15 15 H 1.08999 * 110.33832 * 305.70384 * 14 13 11 16 16 C 1.51095 * 110.38593 * 67.99240 * 14 13 11 17 17 C 1.30518 * 111.10484 * 135.36578 * 16 14 13 18 18 C 1.51102 * 111.10629 * 359.97438 * 17 16 14 19 19 C 1.54631 * 110.48283 * 183.35333 * 14 13 11 20 20 C 1.46509 * 120.00338 * 270.00156 * 10 9 7 21 21 C 1.53000 * 117.49382 * 13.50360 * 20 10 9 22 22 C 1.53002 * 117.49710 * 304.84440 * 20 10 9 23 23 H 0.97004 * 120.00140 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46577 * 60.00432 * 9 7 2 25 25 H 1.09000 * 109.46886 * 300.00356 * 9 7 2 26 26 H 1.09002 * 109.47098 * 55.83777 * 13 11 10 27 27 H 1.08996 * 109.47916 * 295.83771 * 13 11 10 28 28 H 1.08001 * 124.44822 * 315.34201 * 16 14 13 29 29 H 1.08002 * 124.45386 * 179.97438 * 17 16 14 30 30 H 1.08995 * 110.39025 * 102.37670 * 18 17 16 31 31 H 1.08996 * 110.39058 * 224.64521 * 18 17 16 32 32 H 1.08996 * 111.04100 * 334.53917 * 19 14 13 33 33 H 1.09004 * 111.03585 * 98.47445 * 19 14 13 34 34 H 1.08998 * 115.55076 * 159.17546 * 20 10 9 35 35 H 1.08996 * 117.50175 * 359.97438 * 21 20 10 36 36 H 1.08999 * 117.49604 * 145.02420 * 21 20 10 37 37 H 1.08996 * 117.50379 * 214.97562 * 22 20 10 38 38 H 1.09004 * 117.49785 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.6409 -4.1249 1.1666 12 8 2.1757 -3.7298 2.2147 13 6 3.7084 -5.1886 1.1694 14 6 4.0949 -5.5194 2.6124 15 1 4.3814 -4.6128 3.1452 16 6 2.9500 -6.2063 3.3197 17 6 3.3703 -7.2336 4.0064 18 6 4.8656 -7.4036 3.8710 19 6 5.2487 -6.5485 2.6411 20 6 2.6790 -4.1695 -1.2693 21 6 2.4068 -3.3633 -2.5409 22 6 1.6256 -4.6514 -2.2688 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 4.5848 -4.8252 0.6327 27 1 3.3289 -6.0856 0.6802 28 1 1.9192 -5.8886 3.2647 29 1 2.7330 -7.8777 4.5942 30 1 5.3721 -7.0338 4.7625 31 1 5.1148 -8.4509 3.7005 32 1 5.2579 -7.1516 1.7332 33 1 6.2092 -6.0554 2.7909 34 1 3.6148 -4.7259 -1.2168 35 1 1.8731 -2.4190 -2.4336 36 1 3.1633 -3.3898 -3.3252 37 1 1.8685 -5.5246 -2.8743 38 1 0.5784 -4.5545 -1.9823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701301165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:24 Heat of formation + Delta-G solvation = 2.077026 kcal Electronic energy + Delta-G solvation = -18356.369391 eV Core-core repulsion = 15585.749448 eV Total energy + Delta-G solvation = -2770.619943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.59100 -38.17609 -36.57668 -33.21257 -32.02338 -31.20818 -28.81261 -27.58761 -25.06366 -22.79199 -21.95038 -21.57529 -20.35611 -18.70648 -17.96148 -16.71037 -16.41498 -15.78283 -15.50750 -14.85194 -14.40511 -14.26972 -13.85324 -13.40299 -12.72569 -12.16602 -12.09313 -11.74483 -11.67754 -11.45834 -11.34080 -11.16276 -11.05527 -10.95614 -10.78946 -10.60483 -10.54692 -10.47499 -10.13259 -10.04239 -9.49631 -8.79214 -8.71439 -8.43291 -7.47299 -6.03792 -4.08431 2.49919 3.29886 3.36355 3.38568 3.43299 3.88023 4.40235 4.48688 4.72289 4.75026 4.98714 5.17962 5.27848 5.30646 5.36796 5.42019 5.49450 5.57660 5.64910 5.69342 5.78228 5.88268 5.96319 6.02701 6.06349 6.20393 6.34202 6.43582 6.47572 6.77856 6.79657 7.07664 7.11840 7.46554 7.57044 7.93055 8.24303 8.46633 8.91739 9.13395 9.56610 11.03946 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.006042 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.028117 B = 4632.783998 C = 5231.191054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.243 3.757 10 N -0.573 5.573 11 C 0.510 3.490 12 O -0.539 6.539 13 C -0.131 4.131 14 C -0.055 4.055 15 H 0.089 0.911 16 C -0.126 4.126 17 C -0.197 4.197 18 C -0.096 4.096 19 C -0.122 4.122 20 C 0.076 3.924 21 C -0.178 4.178 22 C -0.202 4.202 23 H 0.263 0.737 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 -13.685 -0.504 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.124 3.876 10 N -0.303 5.303 11 C 0.297 3.703 12 O -0.416 6.416 13 C -0.172 4.172 14 C -0.074 4.074 15 H 0.107 0.893 16 C -0.144 4.144 17 C -0.215 4.215 18 C -0.133 4.133 19 C -0.160 4.160 20 C -0.031 4.031 21 C -0.216 4.216 22 C -0.241 4.241 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.115 -13.324 0.076 15.601 hybrid contribution 0.343 1.040 -0.150 1.106 sum 8.459 -12.283 -0.075 14.914 Atomic orbital electron populations 1.69937 1.05977 1.26967 1.50520 1.24929 0.94853 0.99155 0.95173 0.86516 0.79866 0.83174 0.77992 1.20635 1.21140 1.19928 1.21411 0.93314 0.90511 1.50806 0.92472 1.19271 0.87718 0.82179 0.98408 1.47766 1.45158 1.34326 1.03083 1.20303 0.83408 0.82821 0.83749 1.90657 1.58391 1.61704 1.30860 1.21733 0.98675 0.98777 0.97976 1.20834 0.93321 0.98701 0.94529 0.89270 1.23397 0.99556 0.94767 0.96633 1.23176 0.96223 0.99776 1.02360 1.21288 0.94118 0.99752 0.98107 1.22553 0.98020 0.97127 0.98259 1.21505 0.97411 1.01691 0.82460 1.23369 1.03133 0.97257 0.97799 1.23381 0.98629 0.98263 1.03861 0.92750 0.94949 0.93809 0.89524 0.89513 0.85479 0.86358 0.91241 0.91753 0.91088 0.91071 0.86535 0.86287 0.89077 0.89063 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.67 8.92 -34.44 -0.31 -14.97 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.24 6.35 4.47 -5.20 -0.02 6.33 16 10 N -0.57 -12.24 2.80 -167.47 -0.47 -12.71 16 11 C 0.51 10.59 7.48 -10.99 -0.08 10.51 16 12 O -0.54 -13.34 14.20 5.56 0.08 -13.26 16 13 C -0.13 -1.97 3.57 -27.88 -0.10 -2.07 16 14 C -0.06 -0.80 2.53 -90.72 -0.23 -1.03 16 15 H 0.09 1.47 8.02 -51.93 -0.42 1.05 16 16 C -0.13 -1.90 9.21 -35.70 -0.33 -2.23 16 17 C -0.20 -2.50 10.77 -35.69 -0.38 -2.88 16 18 C -0.10 -1.03 6.81 -26.83 -0.18 -1.21 16 19 C -0.12 -1.35 6.71 -25.02 -0.17 -1.52 16 20 C 0.08 1.26 6.15 -67.92 -0.42 0.85 16 21 C -0.18 -2.94 9.73 -26.69 -0.26 -3.20 16 22 C -0.20 -3.05 10.03 -26.69 -0.27 -3.32 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.86 6.25 -51.93 -0.32 0.53 16 25 H 0.04 1.31 7.35 -51.93 -0.38 0.92 16 26 H 0.09 1.15 7.60 -51.93 -0.39 0.75 16 27 H 0.09 1.14 8.13 -51.93 -0.42 0.72 16 28 H 0.13 2.18 7.30 -52.49 -0.38 1.80 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.12 1.58 6.62 -51.93 -0.34 1.23 16 35 H 0.12 2.42 6.29 -51.93 -0.33 2.09 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.58 7.84 -51.93 -0.41 1.17 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -31.72 311.19 -8.73 -40.45 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.89 Total: 2.90 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.85 Total: -13.11 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.27 Total: -38.52 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.72 -8.73 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701301165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.527 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds