Wall clock time and date at job start Mon Mar 30 2020 07:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48497 * 109.47259 * 269.99958 * 3 2 1 5 5 H 1.48500 * 109.47254 * 30.00364 * 3 2 1 6 6 H 1.48511 * 109.46810 * 150.00039 * 3 2 1 7 7 C 1.37876 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99182 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00616 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00305 * 89.99948 * 10 9 7 12 12 O 1.21281 * 119.99516 * 5.29177 * 11 10 9 13 13 C 1.50696 * 120.00295 * 185.28089 * 11 10 9 14 14 C 1.53008 * 109.47176 * 175.83400 * 13 11 10 15 15 H 1.08999 * 110.33832 * 305.70384 * 14 13 11 16 16 C 1.51095 * 110.38593 * 67.99240 * 14 13 11 17 17 C 1.30518 * 111.10484 * 135.36578 * 16 14 13 18 18 C 1.51102 * 111.10629 * 359.97438 * 17 16 14 19 19 C 1.54631 * 110.48283 * 183.35333 * 14 13 11 20 20 C 1.46509 * 120.00338 * 270.00156 * 10 9 7 21 21 C 1.53000 * 117.49382 * 13.50360 * 20 10 9 22 22 C 1.53002 * 117.49710 * 304.84440 * 20 10 9 23 23 H 0.97004 * 120.00140 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46577 * 60.00432 * 9 7 2 25 25 H 1.09000 * 109.46886 * 300.00356 * 9 7 2 26 26 H 1.09002 * 109.47098 * 55.83777 * 13 11 10 27 27 H 1.08996 * 109.47916 * 295.83771 * 13 11 10 28 28 H 1.08001 * 124.44822 * 315.34201 * 16 14 13 29 29 H 1.08002 * 124.45386 * 179.97438 * 17 16 14 30 30 H 1.08995 * 110.39025 * 102.37670 * 18 17 16 31 31 H 1.08996 * 110.39058 * 224.64521 * 18 17 16 32 32 H 1.08996 * 111.04100 * 334.53917 * 19 14 13 33 33 H 1.09004 * 111.03585 * 98.47445 * 19 14 13 34 34 H 1.08998 * 115.55076 * 159.17546 * 20 10 9 35 35 H 1.08996 * 117.50175 * 359.97438 * 21 20 10 36 36 H 1.08999 * 117.49604 * 145.02420 * 21 20 10 37 37 H 1.08996 * 117.50379 * 214.97562 * 22 20 10 38 38 H 1.09004 * 117.49785 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.6409 -4.1249 1.1666 12 8 2.1757 -3.7298 2.2147 13 6 3.7084 -5.1886 1.1694 14 6 4.0949 -5.5194 2.6124 15 1 4.3814 -4.6128 3.1452 16 6 2.9500 -6.2063 3.3197 17 6 3.3703 -7.2336 4.0064 18 6 4.8656 -7.4036 3.8710 19 6 5.2487 -6.5485 2.6411 20 6 2.6790 -4.1695 -1.2693 21 6 2.4068 -3.3633 -2.5409 22 6 1.6256 -4.6514 -2.2688 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 4.5848 -4.8252 0.6327 27 1 3.3289 -6.0856 0.6802 28 1 1.9192 -5.8886 3.2647 29 1 2.7330 -7.8777 4.5942 30 1 5.3721 -7.0338 4.7625 31 1 5.1148 -8.4509 3.7005 32 1 5.2579 -7.1516 1.7332 33 1 6.2092 -6.0554 2.7909 34 1 3.6148 -4.7259 -1.2168 35 1 1.8731 -2.4190 -2.4336 36 1 3.1633 -3.3898 -3.3252 37 1 1.8685 -5.5246 -2.8743 38 1 0.5784 -4.5545 -1.9823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701301165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:24 Heat of formation + Delta-G solvation = -16.689867 kcal Electronic energy + Delta-G solvation = -18357.183184 eV Core-core repulsion = 15585.749448 eV Total energy + Delta-G solvation = -2771.433736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06269 -39.36563 -38.06815 -35.24383 -33.77303 -32.53275 -29.81879 -29.44249 -26.50034 -24.63864 -23.27364 -22.99419 -21.33387 -20.00343 -19.37073 -18.58392 -18.16246 -17.14010 -16.90202 -16.36522 -16.07415 -15.56883 -15.27080 -14.86012 -14.47385 -13.70147 -13.53750 -13.37071 -12.88622 -12.75717 -12.72216 -12.62595 -12.56477 -12.24420 -12.21642 -12.14609 -12.02411 -11.92416 -11.65059 -11.47268 -11.33604 -10.65721 -10.45773 -9.75294 -9.20359 -8.22811 -6.37947 1.34168 1.37253 1.42332 1.47488 1.82355 2.26342 2.42390 3.05656 3.12598 3.59829 3.78226 3.92465 4.01086 4.02976 4.10150 4.22085 4.41204 4.52377 4.61433 4.71739 4.79161 4.86123 4.90743 5.01257 5.01777 5.06041 5.13325 5.18446 5.26497 5.35963 5.43021 5.47454 5.55764 5.72698 5.85178 6.03017 6.05378 6.69543 6.83435 7.27896 7.51513 8.83698 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.006042 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.028117 B = 4632.783998 C = 5231.191054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.263 3.737 10 N -0.583 5.583 11 C 0.496 3.504 12 O -0.593 6.593 13 C -0.115 4.115 14 C -0.057 4.057 15 H 0.057 0.943 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.096 4.096 19 C -0.111 4.111 20 C 0.060 3.940 21 C -0.185 4.185 22 C -0.183 4.183 23 H 0.266 0.734 24 H 0.020 0.980 25 H -0.009 1.009 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.724 -15.642 -1.708 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.141 3.859 10 N -0.312 5.312 11 C 0.287 3.713 12 O -0.475 6.475 13 C -0.155 4.155 14 C -0.076 4.076 15 H 0.075 0.925 16 C -0.187 4.187 17 C -0.189 4.189 18 C -0.133 4.133 19 C -0.148 4.148 20 C -0.044 4.044 21 C -0.223 4.223 22 C -0.222 4.222 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.009 0.991 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.180 0.820 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.326 -15.312 -1.165 19.081 hybrid contribution -0.735 1.595 0.268 1.777 sum 10.591 -13.717 -0.898 17.353 Atomic orbital electron populations 1.70067 1.07640 1.28070 1.51280 1.25863 0.95753 1.03053 0.94555 0.85420 0.78261 0.78339 0.78838 1.18695 1.20774 1.19706 1.21618 0.93081 0.91641 1.50738 0.92936 1.18637 0.88142 0.83950 0.95143 1.47790 1.44465 1.33349 1.05642 1.21507 0.83890 0.83388 0.82561 1.90625 1.60305 1.63695 1.32837 1.21753 0.97128 0.97344 0.99236 1.20844 0.94564 0.98566 0.93615 0.92467 1.23229 0.98405 0.96976 1.00102 1.23529 0.97937 0.97875 0.99596 1.21378 0.92057 1.01393 0.98443 1.22556 0.96793 0.96083 0.99386 1.22065 0.99715 1.02352 0.80228 1.23323 1.04208 0.95822 0.98952 1.23425 0.96746 0.99054 1.02942 0.92493 0.96176 0.99132 0.86723 0.86709 0.89214 0.85077 0.90427 0.89048 0.88883 0.89565 0.81951 0.90999 0.85348 0.84437 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.01 0.37 5.46 84.65 0.46 0.84 16 3 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.53 -31.23 8.92 25.60 0.23 -31.00 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 9 C 0.26 14.66 4.47 85.64 0.38 15.05 16 10 N -0.58 -25.62 2.80 -802.15 -2.25 -27.87 16 11 C 0.50 21.27 7.48 87.66 0.66 21.93 16 12 O -0.59 -31.63 14.20 -3.03 -0.04 -31.67 16 13 C -0.12 -3.24 3.57 29.85 0.11 -3.13 16 14 C -0.06 -1.61 2.53 -10.86 -0.03 -1.63 16 15 H 0.06 1.93 8.02 -2.39 -0.02 1.92 16 16 C -0.17 -5.18 9.21 26.27 0.24 -4.94 16 17 C -0.17 -4.05 10.77 26.27 0.28 -3.76 16 18 C -0.10 -1.70 6.81 30.53 0.21 -1.49 16 19 C -0.11 -2.02 6.71 31.70 0.21 -1.81 16 20 C 0.06 1.91 6.15 44.99 0.28 2.19 16 21 C -0.19 -5.91 9.73 30.62 0.30 -5.61 16 22 C -0.18 -5.18 10.03 30.62 0.31 -4.87 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.02 1.16 6.25 -2.39 -0.01 1.14 16 25 H -0.01 -0.62 7.35 -2.39 -0.02 -0.63 16 26 H 0.11 2.59 7.60 -2.39 -0.02 2.58 16 27 H 0.11 2.62 8.13 -2.39 -0.02 2.60 16 28 H 0.09 3.38 7.30 -2.91 -0.02 3.36 16 29 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.33 7.92 -2.39 -0.02 1.31 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.16 3.63 6.62 -2.39 -0.02 3.61 16 35 H 0.07 3.02 6.29 -2.39 -0.02 3.01 16 36 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.07 2.27 7.84 -2.38 -0.02 2.26 16 Total: -1.00 -76.26 311.19 4.68 -71.58 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.03 Total: 15.79 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.63 Total: -18.25 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.97 Total: -85.18 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.04 Total: -31.67 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.26 4.68 -71.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701301165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.887 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds