Wall clock time and date at job start Mon Mar 30 2020 07:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48506 * 109.46967 * 269.99810 * 3 2 1 5 5 H 1.48497 * 109.47218 * 29.99816 * 3 2 1 6 6 H 1.48496 * 109.47125 * 149.99814 * 3 2 1 7 7 C 1.37879 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00005 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99558 * 180.02562 * 7 2 1 10 10 H 1.08988 * 110.91887 * 62.45216 * 9 7 2 11 11 C 1.55161 * 111.00356 * 298.54416 * 9 7 2 12 12 C 1.54320 * 102.94080 * 206.42687 * 11 9 7 13 13 N 1.47024 * 107.27400 * 22.19619 * 12 11 9 14 14 C 1.34771 * 125.64903 * 181.02531 * 13 12 11 15 15 O 1.21283 * 120.00114 * 185.25186 * 14 13 12 16 16 C 1.50709 * 120.00200 * 5.24405 * 14 13 12 17 17 H 1.08996 * 109.63972 * 325.14413 * 16 14 13 18 18 C 1.53020 * 109.63680 * 85.56303 * 16 14 13 19 19 C 1.50077 * 110.14624 * 169.33277 * 18 16 14 20 20 C 1.29444 * 124.06915 * 342.87454 * 19 18 16 21 21 C 1.50060 * 124.08125 * 0.48259 * 20 19 18 22 22 C 1.53036 * 110.14045 * 342.83796 * 21 20 19 23 23 C 1.47419 * 108.70168 * 1.28669 * 13 12 11 24 24 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.71932 * 88.06655 * 11 9 7 26 26 H 1.08994 * 110.87177 * 324.86016 * 11 9 7 27 27 H 1.09000 * 109.88386 * 262.77656 * 12 11 9 28 28 H 1.09001 * 110.01410 * 141.68966 * 12 11 9 29 29 H 1.08995 * 109.36073 * 289.53709 * 18 16 14 30 30 H 1.09000 * 109.36422 * 49.26872 * 18 16 14 31 31 H 1.07998 * 117.96530 * 162.88717 * 19 18 16 32 32 H 1.08002 * 117.95671 * 180.46581 * 20 19 18 33 33 H 1.09004 * 109.35652 * 103.05703 * 21 20 19 34 34 H 1.09004 * 109.36388 * 222.64131 * 21 20 19 35 35 H 1.08999 * 109.65940 * 289.77412 * 22 21 20 36 36 H 1.08997 * 109.64023 * 169.13560 * 22 21 20 37 37 H 1.09003 * 110.36825 * 94.48096 * 23 13 12 38 38 H 1.08999 * 110.36569 * 216.80963 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.9003 -0.7231 0.9038 11 6 4.0681 -0.5023 -1.2713 12 6 5.4494 -1.1668 -1.4498 13 7 5.4088 -2.4550 -0.7424 14 6 6.4292 -3.3299 -0.6446 15 8 6.2554 -4.4077 -0.1163 16 6 7.7863 -2.9691 -1.1918 17 1 7.6697 -2.3640 -2.0908 18 6 8.5721 -2.1824 -0.1405 19 6 10.0049 -2.0417 -0.5645 20 6 10.5660 -2.7689 -1.4765 21 6 9.8597 -3.8473 -2.2447 22 6 8.5680 -4.2456 -1.5272 23 6 4.0651 -2.6340 -0.1631 24 1 -0.4850 0.8401 0.0004 25 1 4.1742 0.5708 -1.1117 26 1 3.4301 -0.7015 -2.1322 27 1 6.2244 -0.5322 -1.0201 28 1 5.6502 -1.3314 -2.5084 29 1 8.1306 -1.1926 -0.0253 30 1 8.5297 -2.7102 0.8122 31 1 10.6051 -1.2869 -0.0783 32 1 11.6074 -2.5881 -1.6986 33 1 9.6207 -3.4821 -3.2435 34 1 10.5105 -4.7179 -2.3268 35 1 8.8088 -4.7799 -0.6081 36 1 7.9685 -4.8819 -2.1782 37 1 3.4341 -3.2107 -0.8394 38 1 4.1327 -3.1268 0.8068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701306641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:24 Heat of formation + Delta-G solvation = -32.411471 kcal Electronic energy + Delta-G solvation = -18462.376825 eV Core-core repulsion = 15690.261349 eV Total energy + Delta-G solvation = -2772.115476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09339 -38.02092 -36.71217 -33.05478 -31.61835 -30.98470 -30.44880 -28.62446 -25.51903 -23.69844 -22.87949 -22.01828 -19.83006 -18.88438 -18.00600 -17.04405 -16.74976 -16.06529 -15.24752 -15.01035 -14.39457 -13.91102 -13.87523 -13.66528 -13.14473 -12.91677 -12.73579 -12.50301 -12.39016 -12.26008 -11.94684 -11.62001 -11.05298 -10.95156 -10.84149 -10.75729 -10.47174 -10.20294 -10.01451 -9.66226 -9.32767 -9.18327 -9.14642 -8.65273 -8.15004 -6.16428 -4.17469 2.13001 2.92383 3.19621 3.29256 3.31048 3.41775 4.32259 4.50034 4.61369 4.75144 5.01751 5.13203 5.13429 5.16530 5.31899 5.35574 5.41273 5.50060 5.59156 5.67438 5.72259 5.77444 5.84155 6.00849 6.06718 6.10622 6.23233 6.39767 6.48533 6.52923 6.63440 6.70907 6.78029 6.86671 7.32478 7.61775 7.98300 8.40806 8.51927 8.86733 9.44355 10.96519 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039610 B = 0.005357 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.728220 B = 5225.321566 C = 5650.468049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.010 3.990 10 H 0.041 0.959 11 C -0.143 4.143 12 C 0.102 3.898 13 N -0.614 5.614 14 C 0.527 3.473 15 O -0.550 6.550 16 C -0.103 4.103 17 H 0.090 0.910 18 C -0.080 4.080 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.091 4.091 22 C -0.100 4.100 23 C 0.119 3.881 24 H 0.265 0.735 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.074 -1.620 -4.590 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.096 0.904 9 C -0.009 4.009 10 H 0.059 0.941 11 C -0.181 4.181 12 C -0.022 4.022 13 N -0.347 5.347 14 C 0.315 3.685 15 O -0.429 6.429 16 C -0.125 4.125 17 H 0.108 0.892 18 C -0.117 4.117 19 C -0.168 4.168 20 C -0.177 4.177 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.003 4.003 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.867 -2.127 -4.304 19.468 hybrid contribution 0.395 1.195 -0.106 1.263 sum 19.261 -0.931 -4.410 19.782 Atomic orbital electron populations 1.69892 1.06288 1.27109 1.50121 1.24958 0.94655 0.98951 0.94217 0.86921 0.80025 0.83699 0.78427 1.20185 1.21939 1.19012 1.20818 0.87831 0.94852 1.51641 0.90408 1.20384 0.97052 0.90420 0.93083 0.94099 1.23128 0.93665 0.98881 1.02413 1.22090 0.99727 0.84639 0.95697 1.48753 1.13069 1.19567 1.53271 1.20175 0.85124 0.83534 0.79629 1.90663 1.84034 1.22591 1.45583 1.21341 0.92306 0.98958 0.99862 0.89165 1.20351 0.92544 1.00471 0.98335 1.22012 0.96235 0.99753 0.98768 1.22060 0.99577 0.97754 0.98269 1.20488 0.96230 0.97401 0.98703 1.21433 0.95116 0.95784 1.01429 1.22439 0.80400 0.99657 0.97771 0.92473 0.91997 0.90181 0.92328 0.92236 0.90419 0.90164 0.87671 0.87980 0.90854 0.90809 0.90738 0.91216 0.91522 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.88 20.56 24.53 -169.99 -4.17 16.39 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -5.88 6.48 56.52 0.37 -5.52 16 7 C -0.51 -13.80 9.13 -34.44 -0.31 -14.12 16 8 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 9 C 0.01 0.23 2.42 -89.50 -0.22 0.01 16 10 H 0.04 0.94 7.42 -51.94 -0.39 0.55 16 11 C -0.14 -2.77 5.08 -24.90 -0.13 -2.90 16 12 C 0.10 1.62 6.10 -3.07 -0.02 1.60 16 13 N -0.61 -11.09 3.32 -170.38 -0.57 -11.65 16 14 C 0.53 9.17 6.95 -10.98 -0.08 9.09 16 15 O -0.55 -11.42 16.56 5.56 0.09 -11.32 16 16 C -0.10 -1.35 2.12 -91.55 -0.19 -1.54 16 17 H 0.09 1.07 7.30 -51.93 -0.38 0.70 16 18 C -0.08 -0.94 5.42 -28.17 -0.15 -1.09 16 19 C -0.15 -1.49 9.80 -35.90 -0.35 -1.85 16 20 C -0.16 -1.48 9.80 -35.90 -0.35 -1.83 16 21 C -0.09 -0.85 6.11 -28.17 -0.17 -1.02 16 22 C -0.10 -1.19 4.73 -26.51 -0.13 -1.32 16 23 C 0.12 2.46 6.33 -2.41 -0.02 2.45 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.06 1.18 5.14 -51.93 -0.27 0.92 16 26 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 27 H 0.06 0.82 7.57 -51.93 -0.39 0.43 16 28 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 29 H 0.08 0.89 7.57 -51.93 -0.39 0.50 16 30 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 38 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 LS Contribution 298.78 15.07 4.50 4.50 Total: -1.00 -30.28 298.78 -7.62 -37.90 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.03 Total: 0.52 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.21 Total: -10.55 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.21 Total: -37.44 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.17 Total: 16.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.28 -7.62 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.484 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds