Wall clock time and date at job start Mon Mar 30 2020 07:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48506 * 109.46967 * 269.99810 * 3 2 1 5 5 H 1.48497 * 109.47218 * 29.99816 * 3 2 1 6 6 H 1.48496 * 109.47125 * 149.99814 * 3 2 1 7 7 C 1.37879 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00005 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99558 * 180.02562 * 7 2 1 10 10 H 1.08988 * 110.91887 * 62.45216 * 9 7 2 11 11 C 1.55161 * 111.00356 * 298.54416 * 9 7 2 12 12 C 1.54320 * 102.94080 * 206.42687 * 11 9 7 13 13 N 1.47024 * 107.27400 * 22.19619 * 12 11 9 14 14 C 1.34771 * 125.64903 * 181.02531 * 13 12 11 15 15 O 1.21283 * 120.00114 * 185.25186 * 14 13 12 16 16 C 1.50709 * 120.00200 * 5.24405 * 14 13 12 17 17 H 1.08996 * 109.63972 * 325.14413 * 16 14 13 18 18 C 1.53020 * 109.63680 * 85.56303 * 16 14 13 19 19 C 1.50077 * 110.14624 * 169.33277 * 18 16 14 20 20 C 1.29444 * 124.06915 * 342.87454 * 19 18 16 21 21 C 1.50060 * 124.08125 * 0.48259 * 20 19 18 22 22 C 1.53036 * 110.14045 * 342.83796 * 21 20 19 23 23 C 1.47419 * 108.70168 * 1.28669 * 13 12 11 24 24 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.71932 * 88.06655 * 11 9 7 26 26 H 1.08994 * 110.87177 * 324.86016 * 11 9 7 27 27 H 1.09000 * 109.88386 * 262.77656 * 12 11 9 28 28 H 1.09001 * 110.01410 * 141.68966 * 12 11 9 29 29 H 1.08995 * 109.36073 * 289.53709 * 18 16 14 30 30 H 1.09000 * 109.36422 * 49.26872 * 18 16 14 31 31 H 1.07998 * 117.96530 * 162.88717 * 19 18 16 32 32 H 1.08002 * 117.95671 * 180.46581 * 20 19 18 33 33 H 1.09004 * 109.35652 * 103.05703 * 21 20 19 34 34 H 1.09004 * 109.36388 * 222.64131 * 21 20 19 35 35 H 1.08999 * 109.65940 * 289.77412 * 22 21 20 36 36 H 1.08997 * 109.64023 * 169.13560 * 22 21 20 37 37 H 1.09003 * 110.36825 * 94.48096 * 23 13 12 38 38 H 1.08999 * 110.36569 * 216.80963 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.9003 -0.7231 0.9038 11 6 4.0681 -0.5023 -1.2713 12 6 5.4494 -1.1668 -1.4498 13 7 5.4088 -2.4550 -0.7424 14 6 6.4292 -3.3299 -0.6446 15 8 6.2554 -4.4077 -0.1163 16 6 7.7863 -2.9691 -1.1918 17 1 7.6697 -2.3640 -2.0908 18 6 8.5721 -2.1824 -0.1405 19 6 10.0049 -2.0417 -0.5645 20 6 10.5660 -2.7689 -1.4765 21 6 9.8597 -3.8473 -2.2447 22 6 8.5680 -4.2456 -1.5272 23 6 4.0651 -2.6340 -0.1631 24 1 -0.4850 0.8401 0.0004 25 1 4.1742 0.5708 -1.1117 26 1 3.4301 -0.7015 -2.1322 27 1 6.2244 -0.5322 -1.0201 28 1 5.6502 -1.3314 -2.5084 29 1 8.1306 -1.1926 -0.0253 30 1 8.5297 -2.7102 0.8122 31 1 10.6051 -1.2869 -0.0783 32 1 11.6074 -2.5881 -1.6986 33 1 9.6207 -3.4821 -3.2435 34 1 10.5105 -4.7179 -2.3268 35 1 8.8088 -4.7799 -0.6081 36 1 7.9685 -4.8819 -2.1782 37 1 3.4341 -3.2107 -0.8394 38 1 4.1327 -3.1268 0.8068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:23 Heat of formation + Delta-G solvation = -51.112228 kcal Electronic energy + Delta-G solvation = -18463.187751 eV Core-core repulsion = 15690.261349 eV Total energy + Delta-G solvation = -2772.926402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39847 -39.20313 -38.09261 -34.98544 -33.04464 -31.95426 -31.60314 -30.18013 -27.26126 -24.87348 -24.00815 -23.24424 -21.58616 -20.23651 -19.00628 -18.74591 -18.11584 -17.13383 -16.79020 -16.26360 -16.18234 -15.29084 -14.96129 -14.68039 -14.63154 -14.22866 -14.09793 -13.90678 -13.55939 -13.28940 -13.20441 -13.13726 -12.79488 -12.54720 -11.99329 -11.93737 -11.78434 -11.64737 -11.45231 -11.34432 -11.17315 -10.74021 -10.66690 -9.85610 -9.63009 -8.29879 -6.37162 1.35484 1.41174 1.42829 1.50996 1.58275 2.02538 2.35508 3.04498 3.43036 3.73526 3.79201 3.85917 4.00291 4.18721 4.22925 4.29726 4.39436 4.40173 4.46187 4.58187 4.63469 4.69229 4.72509 4.87963 4.91738 5.01515 5.05968 5.10988 5.11433 5.23249 5.25704 5.36321 5.52264 5.65211 5.78975 6.07660 6.24914 6.60017 6.68311 7.12096 7.28996 8.86948 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039610 B = 0.005357 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.728220 B = 5225.321566 C = 5650.468049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.253 1.253 5 H -0.298 1.298 6 H -0.241 1.241 7 C -0.523 4.523 8 H 0.030 0.970 9 C 0.008 3.992 10 H 0.042 0.958 11 C -0.140 4.140 12 C 0.105 3.895 13 N -0.616 5.616 14 C 0.523 3.477 15 O -0.593 6.593 16 C -0.094 4.094 17 H 0.113 0.887 18 C -0.078 4.078 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.088 4.088 22 C -0.100 4.100 23 C 0.125 3.875 24 H 0.267 0.733 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.836 0.417 -6.012 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.177 1.177 5 H -0.225 1.225 6 H -0.164 1.164 7 C -0.561 4.561 8 H 0.048 0.952 9 C -0.011 4.011 10 H 0.060 0.940 11 C -0.178 4.178 12 C -0.016 4.016 13 N -0.349 5.349 14 C 0.313 3.687 15 O -0.474 6.474 16 C -0.115 4.115 17 H 0.131 0.869 18 C -0.115 4.115 19 C -0.179 4.179 20 C -0.172 4.172 21 C -0.125 4.125 22 C -0.139 4.139 23 C 0.002 3.998 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.665 -0.094 -5.746 23.382 hybrid contribution -0.866 0.400 0.370 1.024 sum 21.799 0.306 -5.376 22.454 Atomic orbital electron populations 1.70059 1.08522 1.28329 1.52016 1.25904 0.95413 1.03282 0.93587 0.85849 0.79290 0.77862 0.79829 1.17711 1.22547 1.16413 1.21046 0.90512 0.93235 1.51281 0.95172 1.20234 0.93988 0.91944 0.94951 0.94042 1.22996 0.95419 0.99568 0.99792 1.22234 0.98283 0.83457 0.97666 1.48813 1.11873 1.20783 1.53381 1.21086 0.86292 0.82612 0.78661 1.90643 1.84810 1.24497 1.47425 1.21391 0.89359 1.00001 1.00795 0.86920 1.20335 0.93922 1.00209 0.97064 1.22022 0.95161 1.01001 0.99680 1.22278 1.00545 0.96814 0.97544 1.20510 0.94778 0.98225 0.98956 1.21438 0.96468 0.95111 1.00841 1.22088 0.82239 0.98548 0.96898 0.92359 0.90697 0.91176 0.89034 0.89055 0.89667 0.91981 0.86002 0.85779 0.89347 0.89369 0.92536 0.92071 0.93350 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 2 C 0.02 0.88 5.46 84.65 0.46 1.34 16 3 Si 0.95 41.40 24.53 68.60 1.68 43.08 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.24 -9.50 6.48 99.48 0.64 -8.85 16 7 C -0.52 -29.17 9.13 25.60 0.23 -28.94 16 8 H 0.03 1.90 8.03 -2.91 -0.02 1.88 16 9 C 0.01 0.37 2.42 -10.07 -0.02 0.35 16 10 H 0.04 1.85 7.42 -2.39 -0.02 1.84 16 11 C -0.14 -5.04 5.08 31.78 0.16 -4.88 16 12 C 0.11 2.94 6.10 86.73 0.53 3.47 16 13 N -0.62 -21.40 3.32 -811.34 -2.70 -24.09 16 14 C 0.52 17.67 6.95 87.66 0.61 18.28 16 15 O -0.59 -25.01 16.56 -3.04 -0.05 -25.06 16 16 C -0.09 -2.22 2.12 -11.40 -0.02 -2.24 16 17 H 0.11 2.17 7.30 -2.39 -0.02 2.16 16 18 C -0.08 -1.62 5.42 29.66 0.16 -1.46 16 19 C -0.16 -2.61 9.80 27.04 0.27 -2.34 16 20 C -0.15 -2.22 9.80 27.03 0.27 -1.96 16 21 C -0.09 -1.31 6.11 29.66 0.18 -1.13 16 22 C -0.10 -2.21 4.73 30.74 0.15 -2.07 16 23 C 0.13 5.32 6.33 86.94 0.55 5.87 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.07 2.53 5.14 -2.39 -0.01 2.51 16 26 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 27 H 0.09 2.04 7.57 -2.39 -0.02 2.02 16 28 H 0.09 2.05 8.00 -2.39 -0.02 2.03 16 29 H 0.08 1.62 7.57 -2.39 -0.02 1.60 16 30 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 31 H 0.12 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 2.19 8.03 -2.39 -0.02 2.18 16 38 H 0.05 2.26 8.09 -2.39 -0.02 2.24 16 Total: -1.00 -69.27 298.78 3.71 -65.56 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.96 Total: 14.13 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.52 Total: -15.70 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.40 Total: -82.01 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.68 Total: 43.08 kcal Total: -69.27 3.71 -65.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.450 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds