Wall clock time and date at job start Mon Mar 30 2020 07:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47264 * 239.99711 * 3 2 1 5 5 H 1.48505 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47385 * 119.99268 * 3 2 1 7 7 C 1.37874 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00283 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.64180 * 298.31065 * 9 7 2 11 11 C 1.55154 * 110.72018 * 61.45163 * 9 7 2 12 12 C 1.54908 * 101.58289 * 153.86513 * 11 9 7 13 13 N 1.47425 * 104.92961 * 322.93718 * 12 11 9 14 14 C 1.34774 * 125.65138 * 204.15299 * 13 12 11 15 15 O 1.21280 * 120.00501 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99753 * 0.02907 * 14 13 12 17 17 H 1.08997 * 109.64394 * 60.41924 * 16 14 13 18 18 C 1.53023 * 109.64046 * 299.99629 * 16 14 13 19 19 C 1.50076 * 110.14741 * 190.88409 * 18 16 14 20 20 C 1.29438 * 124.07649 * 17.12896 * 19 18 16 21 21 C 1.50072 * 124.07448 * 359.55403 * 20 19 18 22 22 C 1.53005 * 110.15349 * 17.09613 * 21 20 19 23 23 C 1.47290 * 108.55742 * 24.15407 * 13 12 11 24 24 H 0.97002 * 120.00084 * 0.02562 * 1 2 3 25 25 H 1.09008 * 111.00345 * 35.78983 * 11 9 7 26 26 H 1.09000 * 111.03743 * 271.95950 * 11 9 7 27 27 H 1.09002 * 110.36632 * 81.83114 * 12 11 9 28 28 H 1.08995 * 110.36781 * 204.04351 * 12 11 9 29 29 H 1.09003 * 109.36055 * 311.08358 * 18 16 14 30 30 H 1.08995 * 109.35947 * 70.81473 * 18 16 14 31 31 H 1.08008 * 117.95806 * 197.11087 * 19 18 16 32 32 H 1.07996 * 117.96410 * 179.53329 * 20 19 18 33 33 H 1.08995 * 109.35473 * 137.31900 * 21 20 19 34 34 H 1.09001 * 109.35961 * 257.04040 * 21 20 19 35 35 H 1.09000 * 109.64450 * 190.89786 * 22 21 20 36 36 H 1.08997 * 109.63188 * 70.27339 * 22 21 20 37 37 H 1.09004 * 109.85762 * 239.50064 * 23 13 12 38 38 H 1.08995 * 110.00297 * 118.43011 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6397 -2.5899 0.8983 11 6 0.3765 -2.6281 -1.2745 12 6 0.2721 -4.1662 -1.4258 13 7 1.5928 -4.6786 -1.0177 14 6 2.1314 -5.8539 -1.3984 15 8 3.2304 -6.1752 -0.9987 16 6 1.3679 -6.7689 -2.3208 17 1 1.1737 -6.2591 -3.2644 18 6 0.0420 -7.1670 -1.6688 19 6 -0.6043 -8.2758 -2.4467 20 6 0.0184 -9.0182 -3.3049 21 6 1.4714 -8.8678 -3.6490 22 6 2.1844 -8.0422 -2.5761 23 6 2.2234 -3.6910 -0.1252 24 1 -0.4850 0.8401 -0.0004 25 1 0.8744 -2.1836 -2.1364 26 1 -0.6066 -2.1829 -1.1214 27 1 -0.5061 -4.5598 -0.7718 28 1 0.0658 -4.4323 -2.4624 29 1 0.2274 -7.5022 -0.6483 30 1 -0.6248 -6.3050 -1.6504 31 1 -1.6543 -8.4662 -2.2799 32 1 -0.5425 -9.7944 -3.8041 33 1 1.9317 -9.8537 -3.7117 34 1 1.5646 -8.3637 -4.6109 35 1 3.1823 -7.7740 -2.9231 36 1 2.2567 -8.6217 -1.6559 37 1 3.1680 -3.3552 -0.5532 38 1 2.3973 -4.1326 0.8559 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:27 Heat of formation + Delta-G solvation = -53.158694 kcal Electronic energy + Delta-G solvation = -18438.513795 eV Core-core repulsion = 15665.498652 eV Total energy + Delta-G solvation = -2773.015143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38119 -39.03237 -38.08062 -35.00722 -32.81885 -31.84154 -31.33738 -30.01327 -27.02250 -25.14146 -23.89473 -23.10811 -21.53609 -20.18020 -18.95442 -18.60158 -17.91350 -17.08119 -16.55726 -16.52528 -16.19772 -15.02476 -14.77220 -14.53308 -14.45455 -14.30334 -13.98703 -13.64073 -13.28317 -13.19354 -12.99362 -12.98550 -12.91871 -12.67384 -12.30391 -11.96365 -11.69606 -11.57310 -11.36911 -11.28360 -10.95750 -10.66788 -10.51278 -9.83498 -9.58431 -8.16314 -6.25848 1.43691 1.43862 1.45627 1.51666 1.61658 2.08150 2.43717 3.15379 3.45486 3.72148 3.84948 4.04152 4.11969 4.28959 4.34331 4.40489 4.42535 4.46199 4.49070 4.63096 4.66671 4.77269 4.79825 4.93530 5.04096 5.08146 5.11388 5.25993 5.27845 5.32969 5.38130 5.58772 5.77692 5.81006 5.86915 6.09397 6.27337 6.65252 6.79122 7.15309 7.41647 8.92310 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.004850 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.470912 B = 5771.409563 C = 6118.583103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.038 3.962 10 H 0.019 0.981 11 C -0.100 4.100 12 C 0.103 3.897 13 N -0.612 5.612 14 C 0.519 3.481 15 O -0.595 6.595 16 C -0.094 4.094 17 H 0.111 0.889 18 C -0.085 4.085 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.098 4.098 23 C 0.120 3.880 24 H 0.264 0.736 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 -14.781 -7.927 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.067 0.933 9 C 0.019 3.981 10 H 0.037 0.963 11 C -0.138 4.138 12 C -0.019 4.019 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.477 6.477 16 C -0.115 4.115 17 H 0.129 0.871 18 C -0.122 4.122 19 C -0.178 4.178 20 C -0.174 4.174 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.003 4.003 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.656 -14.897 -7.736 17.180 hybrid contribution 0.618 1.296 0.454 1.506 sum -3.037 -13.601 -7.283 15.724 Atomic orbital electron populations 1.70013 1.06834 1.27613 1.50304 1.25598 0.95712 1.01920 0.94345 0.85700 0.78505 0.79302 0.78678 1.19930 1.20519 1.19989 1.21290 0.92793 0.91561 1.52135 0.93312 1.19623 0.92780 0.90961 0.94690 0.96330 1.22523 1.00835 0.92300 0.98191 1.22648 0.83601 0.94743 1.00908 1.48860 1.19936 1.18089 1.47528 1.21106 0.85822 0.80688 0.81396 1.90622 1.22930 1.75114 1.59001 1.21361 0.96344 0.95443 0.98363 0.87112 1.20528 0.93983 0.99063 0.98676 1.22060 1.00484 0.96836 0.98414 1.22271 0.96273 0.99774 0.99052 1.20508 0.93003 1.00742 0.98238 1.21401 0.98247 0.94167 0.99793 1.22034 0.97009 0.89237 0.92004 0.92683 0.93804 0.90874 0.90120 0.88713 0.91709 0.89119 0.85907 0.85775 0.89288 0.89699 0.92102 0.92548 0.94070 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.79 12.12 21.45 0.26 -49.53 16 2 C 0.02 1.31 5.33 84.65 0.45 1.77 16 3 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.54 -29.30 8.50 25.60 0.22 -29.08 16 8 H 0.05 2.67 7.57 -2.91 -0.02 2.65 16 9 C 0.04 1.88 2.87 -10.35 -0.03 1.85 16 10 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 11 C -0.10 -4.27 5.75 31.98 0.18 -4.08 16 12 C 0.10 3.37 5.13 86.85 0.45 3.82 16 13 N -0.61 -23.32 3.33 -811.12 -2.70 -26.03 16 14 C 0.52 18.98 7.20 87.66 0.63 19.62 16 15 O -0.59 -26.31 16.23 -3.03 -0.05 -26.36 16 16 C -0.09 -2.46 1.92 -11.40 -0.02 -2.48 16 17 H 0.11 2.58 7.86 -2.39 -0.02 2.56 16 18 C -0.09 -1.89 5.06 29.66 0.15 -1.74 16 19 C -0.16 -2.82 9.80 27.05 0.27 -2.56 16 20 C -0.16 -2.49 9.80 27.04 0.27 -2.23 16 21 C -0.09 -1.49 6.12 29.65 0.18 -1.31 16 22 C -0.10 -2.37 4.69 30.73 0.14 -2.23 16 23 C 0.12 5.40 6.47 86.68 0.56 5.96 16 24 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 25 H 0.04 1.98 8.04 -2.38 -0.02 1.96 16 26 H 0.07 3.28 7.54 -2.39 -0.02 3.27 16 27 H 0.08 2.37 7.33 -2.39 -0.02 2.35 16 28 H 0.09 2.51 7.26 -2.39 -0.02 2.49 16 29 H 0.06 1.59 8.10 -2.39 -0.02 1.58 16 30 H 0.09 1.88 5.44 -2.39 -0.01 1.87 16 31 H 0.12 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.12 1.48 8.06 -2.91 -0.02 1.45 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.62 7.89 -2.39 -0.02 1.60 16 36 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 37 H 0.04 1.99 7.66 -2.38 -0.02 1.97 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -62.90 301.00 4.00 -58.90 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.02 Total: 11.06 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.45 Total: -12.71 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.44 Total: -75.56 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -62.90 4.00 -58.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.740 kcal (2) G-P(sol) polarization free energy of solvation -62.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds