Wall clock time and date at job start Mon Mar 30 2020 07:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48496 * 109.46953 * 239.99984 * 3 2 1 5 5 H 1.48504 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46816 * 119.99693 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00196 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99921 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.89186 * 303.88217 * 9 7 2 11 11 C 1.55163 * 111.00076 * 67.80593 * 9 7 2 12 12 C 1.54341 * 103.01811 * 153.37932 * 11 9 7 13 13 N 1.47018 * 107.26501 * 338.13682 * 12 11 9 14 14 C 1.34780 * 125.64397 * 178.84583 * 13 12 11 15 15 O 1.21284 * 119.99955 * 184.70636 * 14 13 12 16 16 C 1.50699 * 120.00511 * 4.71384 * 14 13 12 17 17 H 1.09007 * 109.63719 * 333.65491 * 16 14 13 18 18 C 1.53021 * 109.64349 * 94.28815 * 16 14 13 19 19 C 1.50069 * 110.14777 * 169.12407 * 18 16 14 20 20 C 1.29440 * 124.07516 * 342.87139 * 19 18 16 21 21 C 1.50555 * 124.15777 * 0.41083 * 20 19 18 22 22 C 1.53018 * 109.89132 * 342.99734 * 21 20 19 23 23 C 1.47424 * 108.70551 * 358.58757 * 13 12 11 24 24 H 0.96998 * 120.00542 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.71770 * 271.93321 * 11 9 7 26 26 H 1.08998 * 110.71835 * 35.21371 * 11 9 7 27 27 H 1.08998 * 109.99160 * 218.66378 * 12 11 9 28 28 H 1.08996 * 109.77928 * 97.49317 * 12 11 9 29 29 H 1.09006 * 109.35760 * 289.33149 * 18 16 14 30 30 H 1.09002 * 109.35884 * 49.05211 * 18 16 14 31 31 H 1.07999 * 117.96162 * 162.84385 * 19 18 16 32 32 H 1.07996 * 117.96220 * 180.48919 * 20 19 18 33 33 H 1.09004 * 109.62449 * 222.78475 * 21 20 19 34 34 H 1.08994 * 109.34382 * 103.04615 * 21 20 19 35 35 H 1.08998 * 109.64831 * 289.58324 * 22 21 20 36 36 H 1.09001 * 109.64539 * 169.15912 * 22 21 20 37 37 H 1.09005 * 110.36527 * 143.19296 * 23 13 12 38 38 H 1.08995 * 110.36399 * 265.51241 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.5654 -2.5513 0.8474 11 6 0.4986 -2.7080 -1.3391 12 6 0.4005 -4.2445 -1.4470 13 7 1.4587 -4.8100 -0.5974 14 6 1.6922 -6.1232 -0.4032 15 8 2.5406 -6.4778 0.3877 16 6 0.8994 -7.1509 -1.1689 17 1 -0.0690 -6.7344 -1.4463 18 6 1.6677 -7.5602 -2.4274 19 6 1.0264 -8.7623 -3.0565 20 6 0.1918 -9.5415 -2.4467 21 6 -0.2606 -9.3477 -1.0239 22 6 0.6946 -8.3974 -0.2987 23 6 2.2259 -3.7030 0.0020 24 1 -0.4851 0.8400 0.0004 25 1 -0.4933 -2.2578 -1.2989 26 1 1.0739 -2.3026 -2.1714 27 1 0.5493 -4.5557 -2.4809 28 1 -0.5756 -4.5774 -1.0943 29 1 1.6624 -6.7341 -3.1387 30 1 2.6969 -7.8003 -2.1604 31 1 1.2765 -8.9913 -4.0819 32 1 -0.2046 -10.3850 -2.9923 33 1 -0.2736 -10.3087 -0.5098 34 1 -1.2649 -8.9240 -1.0190 35 1 1.6519 -8.8928 -0.1372 36 1 0.2654 -8.1079 0.6605 37 1 2.5193 -3.9533 1.0216 38 1 3.1049 -3.4797 -0.6026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701306646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:32 Heat of formation + Delta-G solvation = -40.239070 kcal Electronic energy + Delta-G solvation = -18328.259144 eV Core-core repulsion = 15555.804238 eV Total energy + Delta-G solvation = -2772.454906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94530 -37.84987 -36.49269 -33.05115 -31.45442 -30.88254 -29.99853 -28.37714 -25.28363 -23.69635 -22.88301 -21.76964 -19.77956 -18.68528 -17.89837 -16.89817 -16.43988 -15.91881 -15.11255 -14.67932 -14.48674 -14.07655 -13.62857 -13.49395 -12.88211 -12.71544 -12.53528 -12.39182 -12.31464 -11.89434 -11.54328 -11.25933 -11.03485 -10.93030 -10.82072 -10.67882 -10.50216 -10.37875 -9.83290 -9.47901 -9.17818 -9.09136 -9.00688 -8.48228 -7.98033 -6.11812 -4.15403 2.19235 3.04186 3.28523 3.33203 3.35722 3.57356 4.37873 4.59058 4.69932 4.84445 5.12557 5.20662 5.22624 5.23298 5.43501 5.48565 5.62983 5.64806 5.78809 5.81958 5.86364 5.88915 6.02830 6.13658 6.25165 6.30923 6.37766 6.54263 6.62418 6.82104 6.84218 6.98059 7.10189 7.42989 7.69312 7.87770 8.15303 8.27958 8.65186 8.86689 9.49706 10.98375 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.048884 B = 0.004589 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.644459 B = 6099.942878 C = 6237.805066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.113 4.113 12 C 0.096 3.904 13 N -0.611 5.611 14 C 0.526 3.474 15 O -0.556 6.556 16 C -0.103 4.103 17 H 0.090 0.910 18 C -0.078 4.078 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.091 4.091 22 C -0.101 4.101 23 C 0.106 3.894 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -14.380 -5.921 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.027 4.027 13 N -0.343 5.343 14 C 0.314 3.686 15 O -0.435 6.435 16 C -0.124 4.124 17 H 0.108 0.892 18 C -0.115 4.115 19 C -0.168 4.168 20 C -0.176 4.176 21 C -0.128 4.128 22 C -0.139 4.139 23 C -0.016 4.016 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.881 -14.509 -5.496 15.628 hybrid contribution 0.309 0.971 -0.218 1.042 sum -1.572 -13.537 -5.714 14.778 Atomic orbital electron populations 1.69932 1.05948 1.26918 1.49856 1.24949 0.94862 0.99145 0.94673 0.86619 0.79584 0.82845 0.78750 1.20186 1.21271 1.20155 1.20919 0.92943 0.89847 1.51738 0.92269 1.19827 0.92777 0.91054 0.93619 0.93995 1.22662 1.02601 0.88975 1.00931 1.22252 0.89787 0.97683 0.93006 1.48785 1.33222 1.05106 1.47179 1.20172 0.83732 0.82036 0.82686 1.90644 1.35606 1.80206 1.37064 1.21327 0.99760 0.95150 0.96191 0.89207 1.20326 0.99440 0.96569 0.95187 1.22004 0.98582 0.96598 0.99567 1.22148 0.99314 0.99494 0.96692 1.20568 0.99214 0.99790 0.93182 1.21444 1.00451 0.94264 0.97784 1.22602 0.95621 0.86174 0.97162 0.92799 0.90218 0.92127 0.92897 0.92604 0.90538 0.90168 0.87704 0.88027 0.90817 0.90816 0.90747 0.91354 0.92008 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 12.62 55.43 0.70 -23.75 16 2 C 0.07 1.76 5.37 -17.82 -0.10 1.67 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.63 8.49 -34.44 -0.29 -13.93 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.12 2.85 -89.62 -0.26 0.86 16 10 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.41 5.90 -24.88 -0.15 -2.56 16 12 C 0.10 1.67 6.02 -3.06 -0.02 1.66 16 13 N -0.61 -11.82 3.33 -170.51 -0.57 -12.38 16 14 C 0.53 9.72 6.85 -10.98 -0.08 9.64 16 15 O -0.56 -12.08 16.63 5.55 0.09 -11.99 16 16 C -0.10 -1.44 2.27 -91.56 -0.21 -1.65 16 17 H 0.09 1.18 6.97 -51.93 -0.36 0.82 16 18 C -0.08 -0.97 5.42 -28.18 -0.15 -1.12 16 19 C -0.15 -1.57 9.80 -35.90 -0.35 -1.92 16 20 C -0.16 -1.57 9.82 -35.66 -0.35 -1.92 16 21 C -0.09 -0.91 6.16 -27.94 -0.17 -1.08 16 22 C -0.10 -1.30 4.81 -26.52 -0.13 -1.43 16 23 C 0.11 2.31 6.37 -2.53 -0.02 2.30 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.08 1.79 7.85 -51.93 -0.41 1.38 16 26 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.90 7.91 -51.93 -0.41 0.49 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.40 7.99 -51.93 -0.41 0.98 16 38 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -28.92 307.55 -8.62 -37.54 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.19 Total: -0.20 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.26 Total: -9.47 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.13 Total: -36.14 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.92 -8.62 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.697 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds