Wall clock time and date at job start Mon Mar 30 2020 07:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48496 * 109.46953 * 239.99984 * 3 2 1 5 5 H 1.48504 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46816 * 119.99693 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00196 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99921 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.89186 * 303.88217 * 9 7 2 11 11 C 1.55163 * 111.00076 * 67.80593 * 9 7 2 12 12 C 1.54341 * 103.01811 * 153.37932 * 11 9 7 13 13 N 1.47018 * 107.26501 * 338.13682 * 12 11 9 14 14 C 1.34780 * 125.64397 * 178.84583 * 13 12 11 15 15 O 1.21284 * 119.99955 * 184.70636 * 14 13 12 16 16 C 1.50699 * 120.00511 * 4.71384 * 14 13 12 17 17 H 1.09007 * 109.63719 * 333.65491 * 16 14 13 18 18 C 1.53021 * 109.64349 * 94.28815 * 16 14 13 19 19 C 1.50069 * 110.14777 * 169.12407 * 18 16 14 20 20 C 1.29440 * 124.07516 * 342.87139 * 19 18 16 21 21 C 1.50555 * 124.15777 * 0.41083 * 20 19 18 22 22 C 1.53018 * 109.89132 * 342.99734 * 21 20 19 23 23 C 1.47424 * 108.70551 * 358.58757 * 13 12 11 24 24 H 0.96998 * 120.00542 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.71770 * 271.93321 * 11 9 7 26 26 H 1.08998 * 110.71835 * 35.21371 * 11 9 7 27 27 H 1.08998 * 109.99160 * 218.66378 * 12 11 9 28 28 H 1.08996 * 109.77928 * 97.49317 * 12 11 9 29 29 H 1.09006 * 109.35760 * 289.33149 * 18 16 14 30 30 H 1.09002 * 109.35884 * 49.05211 * 18 16 14 31 31 H 1.07999 * 117.96162 * 162.84385 * 19 18 16 32 32 H 1.07996 * 117.96220 * 180.48919 * 20 19 18 33 33 H 1.09004 * 109.62449 * 222.78475 * 21 20 19 34 34 H 1.08994 * 109.34382 * 103.04615 * 21 20 19 35 35 H 1.08998 * 109.64831 * 289.58324 * 22 21 20 36 36 H 1.09001 * 109.64539 * 169.15912 * 22 21 20 37 37 H 1.09005 * 110.36527 * 143.19296 * 23 13 12 38 38 H 1.08995 * 110.36399 * 265.51241 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.5654 -2.5513 0.8474 11 6 0.4986 -2.7080 -1.3391 12 6 0.4005 -4.2445 -1.4470 13 7 1.4587 -4.8100 -0.5974 14 6 1.6922 -6.1232 -0.4032 15 8 2.5406 -6.4778 0.3877 16 6 0.8994 -7.1509 -1.1689 17 1 -0.0690 -6.7344 -1.4463 18 6 1.6677 -7.5602 -2.4274 19 6 1.0264 -8.7623 -3.0565 20 6 0.1918 -9.5415 -2.4467 21 6 -0.2606 -9.3477 -1.0239 22 6 0.6946 -8.3974 -0.2987 23 6 2.2259 -3.7030 0.0020 24 1 -0.4851 0.8400 0.0004 25 1 -0.4933 -2.2578 -1.2989 26 1 1.0739 -2.3026 -2.1714 27 1 0.5493 -4.5557 -2.4809 28 1 -0.5756 -4.5774 -1.0943 29 1 1.6624 -6.7341 -3.1387 30 1 2.6969 -7.8003 -2.1604 31 1 1.2765 -8.9913 -4.0819 32 1 -0.2046 -10.3850 -2.9923 33 1 -0.2736 -10.3087 -0.5098 34 1 -1.2649 -8.9240 -1.0190 35 1 1.6519 -8.8928 -0.1372 36 1 0.2654 -8.1079 0.6605 37 1 2.5193 -3.9533 1.0216 38 1 3.1049 -3.4797 -0.6026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:31 Heat of formation + Delta-G solvation = -55.762864 kcal Electronic energy + Delta-G solvation = -18328.932306 eV Core-core repulsion = 15555.804238 eV Total energy + Delta-G solvation = -2773.128068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34435 -39.10764 -38.00155 -34.97922 -32.76356 -31.83386 -31.45090 -30.06229 -27.09342 -24.98377 -24.01349 -23.12002 -21.60433 -20.11997 -18.89922 -18.59972 -17.96391 -17.07895 -16.69697 -16.47607 -15.87349 -15.47435 -14.67620 -14.55469 -14.35196 -14.29126 -13.96605 -13.64776 -13.38153 -13.22886 -13.15615 -13.00658 -12.90596 -12.59958 -12.31671 -11.95142 -11.74322 -11.63808 -11.35525 -11.32975 -10.98005 -10.63654 -10.51268 -9.86324 -9.58215 -8.16648 -6.26553 1.42923 1.44613 1.45285 1.52895 1.59795 2.07451 2.44409 3.15437 3.46791 3.75365 3.78976 4.03944 4.09964 4.28452 4.33858 4.36417 4.39456 4.46544 4.48752 4.62890 4.69371 4.72039 4.78672 4.91459 4.99315 5.05043 5.08481 5.23326 5.23682 5.31662 5.40170 5.55295 5.74832 5.78503 5.85474 6.07520 6.26302 6.64517 6.79758 7.14365 7.41516 8.93001 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.048884 B = 0.004589 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.644459 B = 6099.942878 C = 6237.805066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.040 3.960 10 H 0.010 0.990 11 C -0.104 4.104 12 C 0.105 3.895 13 N -0.615 5.615 14 C 0.522 3.478 15 O -0.594 6.594 16 C -0.095 4.095 17 H 0.106 0.894 18 C -0.076 4.076 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.088 4.088 22 C -0.102 4.102 23 C 0.115 3.885 24 H 0.264 0.736 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 -15.568 -7.572 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.028 0.972 11 C -0.143 4.143 12 C -0.017 4.017 13 N -0.347 5.347 14 C 0.312 3.688 15 O -0.476 6.476 16 C -0.116 4.116 17 H 0.124 0.876 18 C -0.113 4.113 19 C -0.178 4.178 20 C -0.172 4.172 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.007 4.007 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.643 -15.709 -7.163 17.466 hybrid contribution 0.556 1.324 0.371 1.483 sum -2.086 -14.385 -6.792 16.044 Atomic orbital electron populations 1.70033 1.07106 1.27672 1.50445 1.25660 0.95659 1.02186 0.94301 0.85653 0.78425 0.78990 0.78842 1.19408 1.20793 1.20032 1.21233 0.93037 0.91256 1.51951 0.92689 1.19719 0.92881 0.91263 0.94033 0.97203 1.22435 1.01041 0.91948 0.98831 1.22250 0.90124 0.94644 0.94686 1.48861 1.33393 1.05082 1.47369 1.21075 0.83413 0.82093 0.82197 1.90622 1.37461 1.80680 1.38845 1.21380 0.99695 0.94061 0.96474 0.87572 1.20308 0.98590 0.97990 0.94418 1.22025 0.99234 0.96033 1.00550 1.22371 0.98649 0.99734 0.96420 1.20595 0.98803 0.99785 0.93245 1.21456 1.00557 0.94309 0.97698 1.22271 0.95382 0.86564 0.96503 0.92728 0.91659 0.92689 0.89420 0.90613 0.89927 0.91775 0.85810 0.85631 0.89143 0.89553 0.92264 0.92301 0.93718 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.87 12.62 21.45 0.27 -50.60 16 2 C 0.02 1.18 5.37 84.65 0.45 1.63 16 3 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -28.92 8.49 25.60 0.22 -28.70 16 8 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 9 C 0.04 1.99 2.85 -10.14 -0.03 1.96 16 10 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 11 C -0.10 -4.42 5.90 31.79 0.19 -4.23 16 12 C 0.10 3.49 6.02 86.74 0.52 4.01 16 13 N -0.62 -23.54 3.33 -811.77 -2.70 -26.24 16 14 C 0.52 19.10 6.85 87.66 0.60 19.70 16 15 O -0.59 -26.31 16.63 -3.04 -0.05 -26.36 16 16 C -0.09 -2.50 2.27 -11.40 -0.03 -2.52 16 17 H 0.11 2.46 6.97 -2.38 -0.02 2.44 16 18 C -0.08 -1.72 5.42 29.66 0.16 -1.56 16 19 C -0.16 -2.86 9.80 27.04 0.27 -2.59 16 20 C -0.15 -2.46 9.82 27.19 0.27 -2.19 16 21 C -0.09 -1.47 6.16 29.81 0.18 -1.29 16 22 C -0.10 -2.47 4.81 30.73 0.15 -2.32 16 23 C 0.12 5.17 6.37 86.86 0.55 5.72 16 24 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.06 2.95 7.85 -2.39 -0.02 2.93 16 26 H 0.05 2.36 8.03 -2.39 -0.02 2.35 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.25 7.91 -2.39 -0.02 2.24 16 29 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.12 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 2.11 7.99 -2.38 -0.02 2.09 16 38 H 0.06 2.51 8.01 -2.39 -0.02 2.49 16 Total: -1.00 -63.35 307.55 4.07 -59.28 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.01 Total: 11.86 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 3.51 Total: -12.39 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.43 Total: -76.85 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -63.35 4.07 -59.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.520 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds