Wall clock time and date at job start Mon Mar 30 2020 07:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00363 * 2 1 4 4 H 1.48504 * 109.47151 * 269.99988 * 3 2 1 5 5 H 1.48504 * 109.46740 * 29.99540 * 3 2 1 6 6 H 1.48498 * 109.47225 * 149.99840 * 3 2 1 7 7 C 1.37883 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99858 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99498 * 180.02562 * 7 2 1 10 10 H 1.08990 * 110.78438 * 56.76061 * 9 7 2 11 11 C 1.55157 * 110.71935 * 293.51831 * 9 7 2 12 12 C 1.55128 * 101.48626 * 205.97507 * 11 9 7 13 13 N 1.47423 * 104.72450 * 37.29504 * 12 11 9 14 14 C 1.34773 * 125.64923 * 155.81952 * 13 12 11 15 15 O 1.21280 * 120.00176 * 4.71014 * 14 13 12 16 16 C 1.50701 * 119.99958 * 184.71332 * 14 13 12 17 17 H 1.09007 * 109.64337 * 26.63610 * 16 14 13 18 18 C 1.53024 * 109.64530 * 266.21706 * 16 14 13 19 19 C 1.50063 * 110.15113 * 190.88168 * 18 16 14 20 20 C 1.29444 * 124.07239 * 17.12849 * 19 18 16 21 21 C 1.50069 * 124.07712 * 359.52815 * 20 19 18 22 22 C 1.53022 * 110.14676 * 17.13571 * 21 20 19 23 23 C 1.47030 * 108.70343 * 335.55491 * 13 12 11 24 24 H 0.97006 * 119.99471 * 0.02562 * 1 2 3 25 25 H 1.09000 * 111.00384 * 324.21133 * 11 9 7 26 26 H 1.08996 * 111.00508 * 88.02612 * 11 9 7 27 27 H 1.09005 * 110.49523 * 278.45241 * 12 11 9 28 28 H 1.08997 * 110.34734 * 156.05983 * 12 11 9 29 29 H 1.09007 * 109.35657 * 311.08915 * 18 16 14 30 30 H 1.08991 * 109.35799 * 70.66741 * 18 16 14 31 31 H 1.07997 * 117.96395 * 197.10956 * 19 18 16 32 32 H 1.08006 * 117.96153 * 179.51170 * 20 19 18 33 33 H 1.09000 * 109.35740 * 256.92363 * 21 20 19 34 34 H 1.09007 * 109.24213 * 137.27486 * 21 20 19 35 35 H 1.08998 * 109.63953 * 190.87322 * 22 21 20 36 36 H 1.08998 * 109.81307 * 70.34869 * 22 21 20 37 37 H 1.08996 * 109.88236 * 120.70147 * 23 13 12 38 38 H 1.08992 * 109.88346 * 241.87023 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8979 -0.6354 0.8534 11 6 4.0610 -0.6153 -1.3295 12 6 5.4485 -1.3035 -1.4161 13 7 5.2263 -2.6626 -0.8899 14 6 5.9741 -3.7471 -1.1744 15 8 6.9726 -3.6340 -1.8535 16 6 5.5696 -5.1003 -0.6488 17 1 4.4912 -5.1251 -0.4920 18 6 6.2880 -5.3740 0.6743 19 6 6.1062 -6.8089 1.0741 20 6 5.7225 -7.7440 0.2654 21 6 5.3960 -7.5219 -1.1824 22 6 5.9741 -6.1859 -1.6541 23 6 4.0574 -2.6377 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 3.4275 -0.8988 -2.1700 26 1 4.1664 0.4679 -1.2703 27 1 6.1765 -0.7733 -0.8019 28 1 5.7855 -1.3481 -2.4517 29 1 7.3512 -5.1631 0.5585 30 1 5.8761 -4.7280 1.4495 31 1 6.3084 -7.0783 2.1002 32 1 5.6319 -8.7465 0.6570 33 1 4.3138 -7.5131 -1.3115 34 1 5.8240 -8.3303 -1.7753 35 1 5.5748 -5.9410 -2.6383 36 1 7.0609 -6.2511 -1.7055 37 1 3.2945 -3.3227 -0.3681 38 1 4.3551 -2.9210 1.0112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701306653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:35 Heat of formation + Delta-G solvation = -34.177698 kcal Electronic energy + Delta-G solvation = -18497.841623 eV Core-core repulsion = 15725.649558 eV Total energy + Delta-G solvation = -2772.192065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05592 -37.97746 -36.68850 -32.97969 -31.64008 -30.89954 -30.44299 -28.62691 -25.22637 -23.95737 -23.02501 -21.58611 -19.95302 -18.78558 -17.91192 -17.17608 -16.67474 -16.05189 -15.40631 -14.72885 -14.34999 -14.13231 -13.58554 -13.55826 -12.97535 -12.86414 -12.78115 -12.47233 -12.33917 -12.19064 -11.91867 -11.56476 -11.03166 -10.97354 -10.80825 -10.73564 -10.41486 -10.23063 -9.99544 -9.72103 -9.30721 -9.21206 -9.04918 -8.66876 -8.14899 -6.18886 -4.20106 2.22846 2.93779 3.20898 3.30335 3.30809 3.42758 4.31516 4.58860 4.70505 4.83915 5.07185 5.13968 5.23420 5.25758 5.45435 5.47337 5.51702 5.57622 5.68323 5.76272 5.82107 5.88490 5.89599 5.99585 6.04819 6.14634 6.28544 6.32091 6.51057 6.57786 6.66989 6.75076 6.80488 6.87642 7.28315 7.57797 8.00030 8.35970 8.52210 8.82620 9.42098 10.93678 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032629 B = 0.005620 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.926682 B = 4981.000625 C = 5410.250314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.007 3.993 10 H 0.043 0.957 11 C -0.140 4.140 12 C 0.105 3.895 13 N -0.612 5.612 14 C 0.530 3.470 15 O -0.558 6.558 16 C -0.104 4.104 17 H 0.095 0.905 18 C -0.078 4.078 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.091 4.091 22 C -0.099 4.099 23 C 0.112 3.888 24 H 0.265 0.735 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -10.467 0.427 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.095 0.905 9 C -0.012 4.012 10 H 0.061 0.939 11 C -0.178 4.178 12 C -0.017 4.017 13 N -0.344 5.344 14 C 0.319 3.681 15 O -0.438 6.438 16 C -0.125 4.125 17 H 0.113 0.887 18 C -0.116 4.116 19 C -0.168 4.168 20 C -0.176 4.176 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.010 4.010 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.696 -10.355 0.064 14.888 hybrid contribution 0.219 1.001 0.118 1.031 sum 10.915 -9.354 0.181 14.376 Atomic orbital electron populations 1.69890 1.06287 1.27160 1.50012 1.24952 0.94654 0.99008 0.94119 0.86928 0.80204 0.83710 0.78602 1.20116 1.21777 1.18864 1.20864 0.87744 0.94760 1.51807 0.90477 1.20230 0.97255 0.90446 0.93276 0.93856 1.23275 0.93851 0.98751 1.01936 1.22302 0.98487 0.82337 0.98611 1.48739 1.30347 1.08516 1.46831 1.20225 0.82571 0.85132 0.80204 1.90637 1.26154 1.86295 1.40682 1.21341 1.02259 0.92142 0.96775 0.88689 1.20335 1.00970 0.94752 0.95522 1.21983 1.00938 0.94541 0.99310 1.22058 1.01001 0.98767 0.95741 1.20484 1.01218 0.97430 0.93700 1.21426 1.01812 0.92758 0.97731 1.22256 0.85836 1.01030 0.91851 0.92458 0.90364 0.91940 0.92332 0.91498 0.90324 0.90412 0.87679 0.87966 0.90614 0.90860 0.91375 0.90813 0.91199 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.96 55.43 0.77 -25.36 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.88 20.46 24.82 -169.99 -4.22 16.24 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -5.85 6.45 56.52 0.36 -5.48 16 7 C -0.51 -13.36 9.05 -34.44 -0.31 -13.67 16 8 H 0.08 2.16 7.77 -52.49 -0.41 1.76 16 9 C 0.01 0.16 2.32 -89.93 -0.21 -0.05 16 10 H 0.04 0.95 7.03 -51.93 -0.36 0.59 16 11 C -0.14 -2.81 5.46 -24.46 -0.13 -2.94 16 12 C 0.11 1.91 6.90 -2.41 -0.02 1.89 16 13 N -0.61 -11.13 3.32 -170.38 -0.57 -11.70 16 14 C 0.53 9.32 6.85 -10.99 -0.08 9.25 16 15 O -0.56 -11.31 16.68 5.56 0.09 -11.21 16 16 C -0.10 -1.46 2.18 -91.56 -0.20 -1.66 16 17 H 0.09 1.33 6.96 -51.92 -0.36 0.97 16 18 C -0.08 -0.98 5.42 -28.18 -0.15 -1.13 16 19 C -0.15 -1.62 9.80 -35.90 -0.35 -1.98 16 20 C -0.16 -1.62 9.80 -35.90 -0.35 -1.98 16 21 C -0.09 -0.94 6.12 -28.18 -0.17 -1.12 16 22 C -0.10 -1.26 4.82 -26.52 -0.13 -1.39 16 23 C 0.11 2.08 5.81 -3.06 -0.02 2.06 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.08 1.63 8.04 -51.93 -0.42 1.22 16 26 H 0.06 1.24 5.61 -51.93 -0.29 0.95 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 29 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.11 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.07 1.31 7.13 -51.93 -0.37 0.94 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -29.49 299.52 -7.65 -37.14 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.03 Total: 1.14 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.22 Total: -10.76 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.21 Total: -37.06 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.22 Total: 16.24 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.49 -7.65 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.964 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds