Wall clock time and date at job start Mon Mar 30 2020 07:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00363 * 2 1 4 4 H 1.48504 * 109.47151 * 269.99988 * 3 2 1 5 5 H 1.48504 * 109.46740 * 29.99540 * 3 2 1 6 6 H 1.48498 * 109.47225 * 149.99840 * 3 2 1 7 7 C 1.37883 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99858 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99498 * 180.02562 * 7 2 1 10 10 H 1.08990 * 110.78438 * 56.76061 * 9 7 2 11 11 C 1.55157 * 110.71935 * 293.51831 * 9 7 2 12 12 C 1.55128 * 101.48626 * 205.97507 * 11 9 7 13 13 N 1.47423 * 104.72450 * 37.29504 * 12 11 9 14 14 C 1.34773 * 125.64923 * 155.81952 * 13 12 11 15 15 O 1.21280 * 120.00176 * 4.71014 * 14 13 12 16 16 C 1.50701 * 119.99958 * 184.71332 * 14 13 12 17 17 H 1.09007 * 109.64337 * 26.63610 * 16 14 13 18 18 C 1.53024 * 109.64530 * 266.21706 * 16 14 13 19 19 C 1.50063 * 110.15113 * 190.88168 * 18 16 14 20 20 C 1.29444 * 124.07239 * 17.12849 * 19 18 16 21 21 C 1.50069 * 124.07712 * 359.52815 * 20 19 18 22 22 C 1.53022 * 110.14676 * 17.13571 * 21 20 19 23 23 C 1.47030 * 108.70343 * 335.55491 * 13 12 11 24 24 H 0.97006 * 119.99471 * 0.02562 * 1 2 3 25 25 H 1.09000 * 111.00384 * 324.21133 * 11 9 7 26 26 H 1.08996 * 111.00508 * 88.02612 * 11 9 7 27 27 H 1.09005 * 110.49523 * 278.45241 * 12 11 9 28 28 H 1.08997 * 110.34734 * 156.05983 * 12 11 9 29 29 H 1.09007 * 109.35657 * 311.08915 * 18 16 14 30 30 H 1.08991 * 109.35799 * 70.66741 * 18 16 14 31 31 H 1.07997 * 117.96395 * 197.10956 * 19 18 16 32 32 H 1.08006 * 117.96153 * 179.51170 * 20 19 18 33 33 H 1.09000 * 109.35740 * 256.92363 * 21 20 19 34 34 H 1.09007 * 109.24213 * 137.27486 * 21 20 19 35 35 H 1.08998 * 109.63953 * 190.87322 * 22 21 20 36 36 H 1.08998 * 109.81307 * 70.34869 * 22 21 20 37 37 H 1.08996 * 109.88236 * 120.70147 * 23 13 12 38 38 H 1.08992 * 109.88346 * 241.87023 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8979 -0.6354 0.8534 11 6 4.0610 -0.6153 -1.3295 12 6 5.4485 -1.3035 -1.4161 13 7 5.2263 -2.6626 -0.8899 14 6 5.9741 -3.7471 -1.1744 15 8 6.9726 -3.6340 -1.8535 16 6 5.5696 -5.1003 -0.6488 17 1 4.4912 -5.1251 -0.4920 18 6 6.2880 -5.3740 0.6743 19 6 6.1062 -6.8089 1.0741 20 6 5.7225 -7.7440 0.2654 21 6 5.3960 -7.5219 -1.1824 22 6 5.9741 -6.1859 -1.6541 23 6 4.0574 -2.6377 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 3.4275 -0.8988 -2.1700 26 1 4.1664 0.4679 -1.2703 27 1 6.1765 -0.7733 -0.8019 28 1 5.7855 -1.3481 -2.4517 29 1 7.3512 -5.1631 0.5585 30 1 5.8761 -4.7280 1.4495 31 1 6.3084 -7.0783 2.1002 32 1 5.6319 -8.7465 0.6570 33 1 4.3138 -7.5131 -1.3115 34 1 5.8240 -8.3303 -1.7753 35 1 5.5748 -5.9410 -2.6383 36 1 7.0609 -6.2511 -1.7055 37 1 3.2945 -3.3227 -0.3681 38 1 4.3551 -2.9210 1.0112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:35 Heat of formation + Delta-G solvation = -51.292103 kcal Electronic energy + Delta-G solvation = -18498.583759 eV Core-core repulsion = 15725.649558 eV Total energy + Delta-G solvation = -2772.934202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39720 -39.20783 -38.08417 -34.90131 -33.02284 -32.00268 -31.66973 -30.16001 -26.98671 -25.24292 -24.05954 -22.91124 -21.68431 -20.14949 -19.15013 -18.78430 -18.01003 -17.26317 -16.80809 -16.35428 -15.88331 -15.41794 -14.82420 -14.64311 -14.60820 -14.36429 -13.97759 -13.83708 -13.60226 -13.28474 -13.19059 -13.13707 -12.82206 -12.67398 -11.97129 -11.94094 -11.79959 -11.62275 -11.53081 -11.34650 -11.14620 -10.73637 -10.65392 -9.86574 -9.62982 -8.27964 -6.33039 1.37026 1.40307 1.41607 1.49230 1.57227 2.03207 2.35934 3.06437 3.42363 3.74779 3.76394 3.89727 3.97752 4.19492 4.22958 4.30300 4.38805 4.40584 4.47701 4.56287 4.62360 4.70456 4.72942 4.89072 4.89760 4.98295 5.03073 5.10244 5.16129 5.20694 5.23219 5.35074 5.55376 5.65218 5.77782 6.06586 6.27691 6.55144 6.72764 7.10672 7.32740 8.87965 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032629 B = 0.005620 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.926682 B = 4981.000625 C = 5410.250314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.240 1.240 7 C -0.512 4.512 8 H 0.042 0.958 9 C 0.002 3.998 10 H 0.050 0.950 11 C -0.135 4.135 12 C 0.108 3.892 13 N -0.616 5.616 14 C 0.529 3.471 15 O -0.586 6.586 16 C -0.101 4.101 17 H 0.096 0.904 18 C -0.075 4.075 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.090 4.090 22 C -0.098 4.098 23 C 0.123 3.877 24 H 0.266 0.734 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 -11.013 0.949 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.550 4.550 8 H 0.060 0.940 9 C -0.017 4.017 10 H 0.068 0.932 11 C -0.173 4.173 12 C -0.015 4.015 13 N -0.348 5.348 14 C 0.319 3.681 15 O -0.467 6.467 16 C -0.123 4.123 17 H 0.114 0.886 18 C -0.113 4.113 19 C -0.179 4.179 20 C -0.174 4.174 21 C -0.127 4.127 22 C -0.136 4.136 23 C 0.000 4.000 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.398 -10.919 0.588 16.531 hybrid contribution -0.341 1.092 -0.079 1.146 sum 12.058 -9.827 0.509 15.563 Atomic orbital electron populations 1.70037 1.08238 1.28073 1.52325 1.25777 0.95285 1.02816 0.94021 0.85990 0.79740 0.79002 0.79258 1.19063 1.22289 1.16318 1.21112 0.90185 0.93328 1.50375 0.93993 1.20176 0.94383 0.92802 0.94364 0.93227 1.23132 0.94663 0.99320 1.00222 1.22286 0.97489 0.82358 0.99320 1.48802 1.30230 1.08886 1.46859 1.20836 0.81880 0.85942 0.79452 1.90620 1.27385 1.86766 1.41957 1.21400 1.02424 0.90411 0.98028 0.88588 1.20312 1.00215 0.96307 0.94452 1.22049 1.01953 0.93487 1.00454 1.22281 0.99977 0.99727 0.95395 1.20512 1.01492 0.96382 0.94272 1.21423 1.01329 0.93770 0.97087 1.22060 0.85845 0.98957 0.93090 0.92520 0.91815 0.91175 0.90739 0.91140 0.91106 0.90172 0.85896 0.85754 0.90111 0.88995 0.92214 0.91691 0.91936 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 13.96 21.45 0.30 -56.23 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.94 41.40 24.82 68.60 1.70 43.10 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.24 -9.61 6.45 99.48 0.64 -8.97 16 7 C -0.51 -26.86 9.05 25.60 0.23 -26.63 16 8 H 0.04 2.43 7.77 -2.91 -0.02 2.41 16 9 C 0.00 0.09 2.32 -10.35 -0.02 0.06 16 10 H 0.05 2.05 7.03 -2.39 -0.02 2.03 16 11 C -0.14 -5.19 5.46 32.06 0.18 -5.02 16 12 C 0.11 3.71 6.90 86.93 0.60 4.31 16 13 N -0.62 -21.48 3.32 -811.34 -2.70 -24.18 16 14 C 0.53 18.01 6.85 87.66 0.60 18.61 16 15 O -0.59 -23.25 16.68 -3.03 -0.05 -23.30 16 16 C -0.10 -2.73 2.18 -11.40 -0.02 -2.76 16 17 H 0.10 2.57 6.96 -2.38 -0.02 2.55 16 18 C -0.08 -1.75 5.42 29.66 0.16 -1.59 16 19 C -0.16 -3.10 9.80 27.04 0.27 -2.84 16 20 C -0.16 -2.76 9.80 27.04 0.27 -2.50 16 21 C -0.09 -1.65 6.12 29.66 0.18 -1.47 16 22 C -0.10 -2.38 4.82 30.73 0.15 -2.23 16 23 C 0.12 4.39 5.81 86.73 0.50 4.89 16 24 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 25 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 26 H 0.07 2.58 5.61 -2.39 -0.01 2.57 16 27 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 29 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.12 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 37 H 0.06 2.33 7.13 -2.39 -0.02 2.31 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -63.38 299.52 3.76 -59.62 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.96 Total: 16.65 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 3.55 Total: -15.67 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.40 Total: -80.41 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.70 Total: 43.10 kcal Total: -63.38 3.76 -59.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.330 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds