Wall clock time and date at job start Mon Mar 30 2020 07:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48493 * 109.47404 * 239.99894 * 3 2 1 5 5 H 1.48503 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47135 * 119.99926 * 3 2 1 7 7 C 1.37881 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99559 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.77675 * 298.21602 * 9 7 2 11 11 C 1.55160 * 110.72072 * 61.45239 * 9 7 2 12 12 C 1.54911 * 101.57869 * 153.86363 * 11 9 7 13 13 N 1.47424 * 104.83438 * 322.99146 * 12 11 9 14 14 C 1.34778 * 125.65072 * 204.09402 * 13 12 11 15 15 O 1.21272 * 120.00127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99804 * 0.02562 * 14 13 12 17 17 C 1.52999 * 109.47100 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.43531 * 52.65244 * 17 16 14 19 19 C 1.51099 * 110.38676 * 290.30316 * 17 16 14 20 20 C 1.30532 * 111.10544 * 224.74999 * 19 17 16 21 21 C 1.51105 * 111.10038 * 0.02562 * 20 19 17 22 22 C 1.54632 * 104.72718 * 16.43519 * 21 20 19 23 23 C 1.47020 * 108.70232 * 24.35585 * 13 12 11 24 24 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.09006 * 111.00045 * 35.79284 * 11 9 7 26 26 H 1.09001 * 111.00600 * 271.94073 * 11 9 7 27 27 H 1.09001 * 110.36233 * 204.15180 * 12 11 9 28 28 H 1.09001 * 110.36743 * 81.83094 * 12 11 9 29 29 H 1.09001 * 109.47112 * 60.00117 * 16 14 13 30 30 H 1.09000 * 109.47247 * 300.00275 * 16 14 13 31 31 H 1.08000 * 124.44620 * 44.77307 * 19 17 16 32 32 H 1.07994 * 124.44464 * 179.97438 * 20 19 17 33 33 H 1.08998 * 110.38545 * 257.62166 * 21 20 19 34 34 H 1.09003 * 110.38022 * 135.24943 * 21 20 19 35 35 H 1.08995 * 111.03420 * 217.32998 * 22 21 20 36 36 H 1.08998 * 111.03825 * 93.39945 * 22 21 20 37 37 H 1.09006 * 109.88316 * 118.12837 * 23 13 12 38 38 H 1.08997 * 109.88399 * 239.29461 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 1 0.6402 -2.5937 0.8960 11 6 0.3765 -2.6270 -1.2769 12 6 0.2722 -4.1650 -1.4295 13 7 1.5933 -4.6754 -1.0201 14 6 2.1335 -5.8504 -1.3996 15 8 3.2326 -6.1700 -0.9990 16 6 1.3718 -6.7670 -2.3219 17 6 2.2023 -8.0230 -2.5929 18 1 2.5201 -8.4788 -1.6552 19 6 3.4020 -7.6865 -3.4477 20 6 3.5599 -8.5631 -4.4019 21 6 2.4915 -9.6301 -4.3428 22 6 1.3902 -9.0337 -3.4359 23 6 2.2212 -3.6933 -0.1242 24 1 -0.4850 0.8400 -0.0004 25 1 0.8745 -2.1818 -2.1384 26 1 -0.6065 -2.1820 -1.1227 27 1 0.0678 -4.4303 -2.4668 28 1 -0.5060 -4.5592 -0.7759 29 1 1.1726 -6.2528 -3.2621 30 1 0.4281 -7.0495 -1.8553 31 1 4.0445 -6.8330 -3.2898 32 1 4.3499 -8.5297 -5.1375 33 1 2.8915 -10.5439 -3.9035 34 1 2.0970 -9.8278 -5.3395 35 1 0.9453 -9.8021 -2.8037 36 1 0.6280 -8.5268 -4.0277 37 1 2.3884 -4.1396 0.8562 38 1 3.1679 -3.3576 -0.5473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701337474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:02 Heat of formation + Delta-G solvation = -31.707715 kcal Electronic energy + Delta-G solvation = -18073.017738 eV Core-core repulsion = 15300.932779 eV Total energy + Delta-G solvation = -2772.084959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77061 -38.33841 -36.58385 -33.05521 -31.60667 -30.09427 -28.94947 -28.37470 -25.89942 -24.28639 -22.16914 -20.56043 -19.75061 -18.96321 -18.29249 -16.88952 -16.31773 -15.85118 -15.46128 -15.12532 -14.56425 -14.40614 -13.74286 -12.84066 -12.60498 -12.52266 -12.09916 -12.01199 -11.83854 -11.78228 -11.30214 -11.27335 -11.22149 -11.09356 -11.01332 -10.81111 -10.71790 -10.50218 -9.80547 -9.49856 -9.23336 -8.98812 -8.86486 -8.49277 -7.95293 -6.11541 -4.14901 2.34335 3.11955 3.28768 3.33119 3.36271 3.61616 4.37993 4.57764 4.60268 4.86715 5.04080 5.21582 5.25278 5.40598 5.46953 5.53106 5.63990 5.64746 5.74261 5.84823 5.88647 5.94776 6.00222 6.15279 6.25395 6.29603 6.33769 6.61454 6.66562 6.86002 6.94917 7.02069 7.12920 7.47482 7.69703 7.87526 8.18699 8.27862 8.69099 8.86325 9.49981 10.98088 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.046727 B = 0.004303 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.086193 B = 6505.435632 C = 6694.280442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.043 3.957 10 H 0.038 0.962 11 C -0.107 4.107 12 C 0.090 3.910 13 N -0.612 5.612 14 C 0.518 3.482 15 O -0.555 6.555 16 C -0.127 4.127 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.133 4.133 20 C -0.190 4.190 21 C -0.097 4.097 22 C -0.123 4.123 23 C 0.110 3.890 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -14.293 -7.520 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.056 0.944 11 C -0.146 4.146 12 C -0.032 4.032 13 N -0.344 5.344 14 C 0.307 3.693 15 O -0.435 6.435 16 C -0.167 4.167 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.151 4.151 20 C -0.208 4.208 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.011 4.011 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.434 -14.402 -7.321 16.162 hybrid contribution 0.419 1.073 -0.013 1.152 sum -0.015 -13.330 -7.334 15.214 Atomic orbital electron populations 1.69926 1.05893 1.26861 1.50027 1.24943 0.94891 0.99116 0.94729 0.86616 0.79583 0.82839 0.78752 1.20222 1.21256 1.20170 1.21001 0.92908 0.89912 1.51614 0.92334 1.19715 0.92397 0.91146 0.94295 0.94362 1.22734 1.02407 0.89144 1.00292 1.22575 0.84124 0.98191 0.98334 1.48788 1.19471 1.18371 1.47819 1.20256 0.86351 0.81038 0.81666 1.90646 1.20893 1.74363 1.57560 1.21671 0.99483 0.95649 0.99925 1.20836 0.93273 0.94051 0.99116 0.89238 1.23350 0.97810 0.98976 0.94987 1.23206 1.00408 0.97292 0.99906 1.21310 0.94631 0.97730 0.99720 1.22567 0.97444 0.98127 0.97871 1.22319 0.98123 0.89139 0.91541 0.92829 0.92251 0.89760 0.92217 0.92342 0.89123 0.89171 0.85721 0.86217 0.91095 0.91547 0.90961 0.90910 0.93437 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 12.12 55.43 0.67 -23.59 16 2 C 0.07 1.75 5.33 -17.82 -0.10 1.65 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.73 8.50 -34.44 -0.29 -14.03 16 8 H 0.06 1.56 7.57 -52.49 -0.40 1.16 16 9 C 0.04 1.04 2.86 -89.93 -0.26 0.78 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.30 5.75 -24.58 -0.14 -2.44 16 12 C 0.09 1.57 6.69 -2.53 -0.02 1.55 16 13 N -0.61 -11.78 3.33 -170.52 -0.57 -12.34 16 14 C 0.52 9.41 7.65 -10.99 -0.08 9.33 16 15 O -0.56 -11.77 15.25 5.56 0.08 -11.68 16 16 C -0.13 -1.70 4.10 -27.89 -0.11 -1.81 16 17 C -0.05 -0.69 2.52 -90.71 -0.23 -0.92 16 18 H 0.09 1.25 7.90 -51.93 -0.41 0.84 16 19 C -0.13 -1.80 9.26 -35.70 -0.33 -2.13 16 20 C -0.19 -2.16 10.78 -35.70 -0.38 -2.55 16 21 C -0.10 -0.92 6.81 -26.83 -0.18 -1.11 16 22 C -0.12 -1.19 6.71 -25.00 -0.17 -1.36 16 23 C 0.11 2.42 6.46 -3.06 -0.02 2.40 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 26 H 0.08 1.90 7.54 -51.93 -0.39 1.51 16 27 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.12 7.83 -51.93 -0.41 0.71 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.12 1.92 7.58 -52.49 -0.40 1.52 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.39 7.66 -51.93 -0.40 1.00 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -28.89 307.86 -8.64 -37.53 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.14 Total: 0.33 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.32 Total: -10.63 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.10 Total: -35.94 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.89 -8.64 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.825 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds