Wall clock time and date at job start Mon Mar 30 2020 07:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48493 * 109.47404 * 239.99894 * 3 2 1 5 5 H 1.48503 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47135 * 119.99926 * 3 2 1 7 7 C 1.37881 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99559 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.77675 * 298.21602 * 9 7 2 11 11 C 1.55160 * 110.72072 * 61.45239 * 9 7 2 12 12 C 1.54911 * 101.57869 * 153.86363 * 11 9 7 13 13 N 1.47424 * 104.83438 * 322.99146 * 12 11 9 14 14 C 1.34778 * 125.65072 * 204.09402 * 13 12 11 15 15 O 1.21272 * 120.00127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99804 * 0.02562 * 14 13 12 17 17 C 1.52999 * 109.47100 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.43531 * 52.65244 * 17 16 14 19 19 C 1.51099 * 110.38676 * 290.30316 * 17 16 14 20 20 C 1.30532 * 111.10544 * 224.74999 * 19 17 16 21 21 C 1.51105 * 111.10038 * 0.02562 * 20 19 17 22 22 C 1.54632 * 104.72718 * 16.43519 * 21 20 19 23 23 C 1.47020 * 108.70232 * 24.35585 * 13 12 11 24 24 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.09006 * 111.00045 * 35.79284 * 11 9 7 26 26 H 1.09001 * 111.00600 * 271.94073 * 11 9 7 27 27 H 1.09001 * 110.36233 * 204.15180 * 12 11 9 28 28 H 1.09001 * 110.36743 * 81.83094 * 12 11 9 29 29 H 1.09001 * 109.47112 * 60.00117 * 16 14 13 30 30 H 1.09000 * 109.47247 * 300.00275 * 16 14 13 31 31 H 1.08000 * 124.44620 * 44.77307 * 19 17 16 32 32 H 1.07994 * 124.44464 * 179.97438 * 20 19 17 33 33 H 1.08998 * 110.38545 * 257.62166 * 21 20 19 34 34 H 1.09003 * 110.38022 * 135.24943 * 21 20 19 35 35 H 1.08995 * 111.03420 * 217.32998 * 22 21 20 36 36 H 1.08998 * 111.03825 * 93.39945 * 22 21 20 37 37 H 1.09006 * 109.88316 * 118.12837 * 23 13 12 38 38 H 1.08997 * 109.88399 * 239.29461 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 1 0.6402 -2.5937 0.8960 11 6 0.3765 -2.6270 -1.2769 12 6 0.2722 -4.1650 -1.4295 13 7 1.5933 -4.6754 -1.0201 14 6 2.1335 -5.8504 -1.3996 15 8 3.2326 -6.1700 -0.9990 16 6 1.3718 -6.7670 -2.3219 17 6 2.2023 -8.0230 -2.5929 18 1 2.5201 -8.4788 -1.6552 19 6 3.4020 -7.6865 -3.4477 20 6 3.5599 -8.5631 -4.4019 21 6 2.4915 -9.6301 -4.3428 22 6 1.3902 -9.0337 -3.4359 23 6 2.2212 -3.6933 -0.1242 24 1 -0.4850 0.8400 -0.0004 25 1 0.8745 -2.1818 -2.1384 26 1 -0.6065 -2.1820 -1.1227 27 1 0.0678 -4.4303 -2.4668 28 1 -0.5060 -4.5592 -0.7759 29 1 1.1726 -6.2528 -3.2621 30 1 0.4281 -7.0495 -1.8553 31 1 4.0445 -6.8330 -3.2898 32 1 4.3499 -8.5297 -5.1375 33 1 2.8915 -10.5439 -3.9035 34 1 2.0970 -9.8278 -5.3395 35 1 0.9453 -9.8021 -2.8037 36 1 0.6280 -8.5268 -4.0277 37 1 2.3884 -4.1396 0.8562 38 1 3.1679 -3.3576 -0.5473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701337474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:02 Heat of formation + Delta-G solvation = -47.235070 kcal Electronic energy + Delta-G solvation = -18073.691054 eV Core-core repulsion = 15300.932779 eV Total energy + Delta-G solvation = -2772.758275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12981 -39.47327 -38.15351 -34.97743 -32.89019 -31.67912 -30.07164 -29.74789 -27.39626 -25.81307 -23.71413 -21.68497 -21.26846 -20.28742 -19.43838 -18.67748 -17.83519 -17.00542 -16.76522 -16.57135 -16.37188 -15.53391 -15.22214 -14.45925 -14.27927 -13.95409 -13.46124 -13.17413 -13.07508 -12.92795 -12.82036 -12.74532 -12.66985 -12.63629 -12.31324 -12.05828 -11.98094 -11.68456 -11.58294 -11.36250 -10.97551 -10.72810 -10.51808 -9.77584 -9.54802 -8.16989 -6.26590 1.39850 1.42933 1.42985 1.50966 1.69962 2.14873 2.43275 3.14565 3.54611 3.75247 3.89783 4.01521 4.08528 4.31071 4.35043 4.45072 4.47017 4.55116 4.59669 4.69396 4.74485 4.77669 4.80229 5.00202 5.02596 5.10853 5.13556 5.27705 5.31974 5.37851 5.45645 5.58600 5.70519 5.78112 5.86679 6.00152 6.27139 6.70339 6.78752 7.23061 7.40853 8.91642 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.046727 B = 0.004303 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.086193 B = 6505.435632 C = 6694.280442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.038 3.962 10 H 0.017 0.983 11 C -0.099 4.099 12 C 0.102 3.898 13 N -0.618 5.618 14 C 0.513 3.487 15 O -0.592 6.592 16 C -0.116 4.116 17 C -0.054 4.054 18 H 0.068 0.932 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.098 4.098 22 C -0.114 4.114 23 C 0.121 3.879 24 H 0.264 0.736 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -15.799 -9.163 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.019 3.981 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.019 4.019 13 N -0.350 5.350 14 C 0.304 3.696 15 O -0.474 6.474 16 C -0.156 4.156 17 C -0.073 4.073 18 H 0.087 0.913 19 C -0.191 4.191 20 C -0.188 4.188 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.002 4.002 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.697 -15.921 -8.975 18.355 hybrid contribution 0.881 1.516 0.505 1.825 sum -0.816 -14.405 -8.470 16.730 Atomic orbital electron populations 1.70011 1.06824 1.27626 1.50271 1.25609 0.95735 1.01945 0.94340 0.85696 0.78513 0.79278 0.78677 1.19943 1.20441 1.19982 1.21292 0.92760 0.91625 1.52178 0.93399 1.19636 0.92826 0.90978 0.94709 0.96470 1.22500 1.00719 0.92520 0.98065 1.22577 0.83513 0.94682 1.01164 1.48878 1.20094 1.18454 1.47612 1.21257 0.86135 0.80778 0.81445 1.90629 1.22807 1.75049 1.58914 1.21744 0.99804 0.94718 0.99311 1.20841 0.93394 0.94407 0.98650 0.91344 1.23251 0.99129 0.99562 0.97137 1.23537 1.00377 0.96509 0.98410 1.21395 0.93900 0.97157 1.01003 1.22577 0.97326 0.97584 0.97617 1.21949 0.96949 0.89422 0.91917 0.92664 0.93910 0.90960 0.88369 0.90227 0.87353 0.86291 0.88880 0.85178 0.90137 0.89442 0.89304 0.89384 0.94057 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.05 12.12 21.45 0.26 -49.79 16 2 C 0.02 1.29 5.33 84.66 0.45 1.75 16 3 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.62 8.50 25.60 0.22 -29.40 16 8 H 0.05 2.65 7.57 -2.91 -0.02 2.63 16 9 C 0.04 1.85 2.86 -10.35 -0.03 1.82 16 10 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 11 C -0.10 -4.27 5.75 31.99 0.18 -4.09 16 12 C 0.10 3.33 6.69 86.86 0.58 3.91 16 13 N -0.62 -23.45 3.33 -811.78 -2.70 -26.15 16 14 C 0.51 18.31 7.65 87.66 0.67 18.98 16 15 O -0.59 -25.73 15.25 -3.01 -0.05 -25.78 16 16 C -0.12 -2.80 4.10 29.85 0.12 -2.67 16 17 C -0.05 -1.28 2.52 -10.85 -0.03 -1.31 16 18 H 0.07 1.87 7.90 -2.39 -0.02 1.86 16 19 C -0.17 -4.58 9.26 26.25 0.24 -4.33 16 20 C -0.17 -3.53 10.78 26.26 0.28 -3.25 16 21 C -0.10 -1.51 6.81 30.53 0.21 -1.30 16 22 C -0.11 -1.77 6.71 31.71 0.21 -1.56 16 23 C 0.12 5.47 6.46 86.73 0.56 6.03 16 24 H 0.26 13.86 8.31 -92.71 -0.77 13.08 16 25 H 0.04 1.94 8.04 -2.38 -0.02 1.92 16 26 H 0.07 3.26 7.54 -2.39 -0.02 3.25 16 27 H 0.10 2.50 7.48 -2.39 -0.02 2.48 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.11 2.28 7.83 -2.39 -0.02 2.26 16 30 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 3.01 7.58 -2.91 -0.02 2.99 16 32 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.14 7.91 -2.39 -0.02 1.12 16 37 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.04 1.87 7.66 -2.39 -0.02 1.85 16 Total: -1.00 -64.61 307.86 4.23 -60.38 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.02 Total: 11.82 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 3.68 Total: -15.41 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -2.44 Total: -75.94 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.61 4.23 -60.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.141 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds