Wall clock time and date at job start Mon Mar 30 2020 07:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48494 * 109.46928 * 269.99568 * 3 2 1 5 5 H 1.48496 * 109.47064 * 30.00212 * 3 2 1 6 6 H 1.48501 * 109.46565 * 149.99845 * 3 2 1 7 7 C 1.37867 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00170 * 359.97438 * 7 2 1 10 10 H 1.08992 * 110.64187 * 56.85930 * 9 7 2 11 11 C 1.55157 * 110.71797 * 293.52209 * 9 7 2 12 12 C 1.55136 * 101.48648 * 205.96921 * 11 9 7 13 13 N 1.47426 * 104.72140 * 37.29694 * 12 11 9 14 14 C 1.34769 * 125.64991 * 155.81744 * 13 12 11 15 15 O 1.21286 * 120.00287 * 179.69011 * 14 13 12 16 16 C 1.50706 * 120.00123 * 359.69595 * 14 13 12 17 17 C 1.52995 * 109.47440 * 180.02562 * 16 14 13 18 18 H 1.09009 * 110.43143 * 304.10199 * 17 16 14 19 19 C 1.51106 * 110.38927 * 66.44995 * 17 16 14 20 20 C 1.30522 * 111.10613 * 135.25078 * 19 17 16 21 21 C 1.51110 * 111.10106 * 0.02562 * 20 19 17 22 22 C 1.54633 * 110.38709 * 181.75542 * 17 16 14 23 23 C 1.47022 * 108.70320 * 335.55520 * 13 12 11 24 24 H 0.96996 * 119.99906 * 0.02562 * 1 2 3 25 25 H 1.08994 * 111.00662 * 324.20849 * 11 9 7 26 26 H 1.09000 * 111.00684 * 88.06410 * 11 9 7 27 27 H 1.08997 * 110.49668 * 278.45781 * 12 11 9 28 28 H 1.08993 * 110.34631 * 156.06063 * 12 11 9 29 29 H 1.08996 * 109.47245 * 59.99425 * 16 14 13 30 30 H 1.09004 * 109.46848 * 299.99702 * 16 14 13 31 31 H 1.08005 * 124.44451 * 315.27156 * 19 17 16 32 32 H 1.07996 * 124.45308 * 180.02562 * 20 19 17 33 33 H 1.08996 * 110.38650 * 102.37939 * 21 20 19 34 34 H 1.09003 * 110.38174 * 224.75606 * 21 20 19 35 35 H 1.09001 * 111.03499 * 334.58024 * 22 17 16 36 36 H 1.08999 * 111.03641 * 98.52287 * 22 17 16 37 37 H 1.09000 * 109.88648 * 120.70559 * 23 13 12 38 38 H 1.09005 * 109.88235 * 241.87191 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5757 -2.5529 -0.8543 11 6 0.4755 -2.6852 1.3304 12 6 0.3776 -4.2310 1.4174 13 7 1.6656 -4.7182 0.8909 14 6 2.2309 -5.9080 1.1755 15 8 3.2959 -6.2078 0.6784 16 6 1.5398 -6.8661 2.1112 17 6 2.3869 -8.1311 2.2631 18 1 2.5842 -8.5762 1.2878 19 6 3.6846 -7.8141 2.9693 20 6 3.9505 -8.7045 3.8859 21 6 2.8747 -9.7641 3.9434 22 6 1.6756 -9.1482 3.1854 23 6 2.2281 -3.6937 -0.0011 24 1 -0.4850 0.8400 -0.0004 25 1 1.0380 -2.2781 2.1705 26 1 -0.5156 -2.2354 1.2712 27 1 -0.4457 -4.5964 0.8036 28 1 0.2481 -4.5448 2.4531 29 1 0.5629 -7.1290 1.7057 30 1 1.4137 -6.3946 3.0859 31 1 4.3098 -6.9624 2.7453 32 1 4.8245 -8.6863 4.5201 33 1 3.2114 -10.6743 3.4472 34 1 2.6025 -9.9730 4.9780 35 1 0.9952 -8.6445 3.8721 36 1 1.1511 -9.9051 2.6023 37 1 3.2030 -3.3754 0.3682 38 1 2.3243 -4.0934 -1.0106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701337476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:08 Heat of formation + Delta-G solvation = -31.844086 kcal Electronic energy + Delta-G solvation = -18070.155371 eV Core-core repulsion = 15298.064499 eV Total energy + Delta-G solvation = -2772.090872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78059 -38.33218 -36.57791 -33.04990 -31.61195 -30.11899 -28.94212 -28.36374 -25.90181 -24.28520 -22.18673 -20.56017 -19.75923 -18.97302 -18.28544 -16.88710 -16.33080 -15.86984 -15.45197 -15.12885 -14.56015 -14.40816 -13.73937 -12.85416 -12.60012 -12.53165 -12.08315 -12.01173 -11.83605 -11.78559 -11.30404 -11.29958 -11.23578 -11.10257 -11.00558 -10.81992 -10.70869 -10.48770 -9.82401 -9.50564 -9.22836 -8.99558 -8.85921 -8.49628 -7.96066 -6.12013 -4.15064 2.35462 3.11430 3.26967 3.33838 3.37445 3.60874 4.38002 4.58054 4.60463 4.86170 5.03808 5.21332 5.26033 5.40302 5.46040 5.53030 5.62825 5.64836 5.74017 5.84672 5.88245 5.94314 5.99007 6.15808 6.24290 6.29335 6.33427 6.62602 6.66359 6.84990 6.96127 6.99628 7.11109 7.43638 7.69062 7.87026 8.18106 8.27792 8.68591 8.87003 9.49909 10.98022 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047118 B = 0.004298 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.105106 B = 6513.323130 C = 6718.482307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.042 0.958 11 C -0.110 4.110 12 C 0.091 3.909 13 N -0.612 5.612 14 C 0.518 3.482 15 O -0.555 6.555 16 C -0.127 4.127 17 C -0.054 4.054 18 H 0.088 0.912 19 C -0.132 4.132 20 C -0.191 4.191 21 C -0.097 4.097 22 C -0.123 4.123 23 C 0.111 3.889 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -14.600 7.231 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.060 0.940 11 C -0.149 4.149 12 C -0.032 4.032 13 N -0.345 5.345 14 C 0.307 3.693 15 O -0.434 6.434 16 C -0.167 4.167 17 C -0.073 4.073 18 H 0.107 0.893 19 C -0.150 4.150 20 C -0.209 4.209 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.011 4.011 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.204 -14.701 6.982 16.276 hybrid contribution 0.395 1.073 0.000 1.143 sum 0.599 -13.628 6.982 15.324 Atomic orbital electron populations 1.69941 1.05907 1.26774 1.50092 1.24951 0.94884 0.99145 0.94737 0.86561 0.79890 0.83198 0.78206 1.20590 1.21196 1.19836 1.21042 0.92931 0.89901 1.51449 0.92292 1.19726 0.92781 0.91098 0.93997 0.93970 1.22805 1.02308 0.89208 1.00551 1.22595 0.84959 0.98284 0.97315 1.48782 1.22455 1.16404 1.46827 1.20255 0.85435 0.81315 0.82293 1.90649 1.22558 1.76068 1.54152 1.21670 0.99840 0.95217 1.00001 1.20827 0.92887 0.93949 0.99589 0.89347 1.23378 0.97326 0.98970 0.95350 1.23208 1.00093 0.97299 1.00338 1.21314 0.94016 0.97737 1.00316 1.22569 0.97264 0.98019 0.98157 1.22321 0.98864 0.88252 0.91669 0.92881 0.92177 0.90070 0.92278 0.92213 0.89178 0.89138 0.85574 0.86230 0.91108 0.91565 0.90911 0.90969 0.92196 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 12.50 55.43 0.69 -23.67 16 2 C 0.07 1.74 5.36 -17.82 -0.10 1.64 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.69 8.47 -34.44 -0.29 -13.98 16 8 H 0.06 1.57 7.53 -52.49 -0.40 1.18 16 9 C 0.04 1.03 2.78 -89.93 -0.25 0.78 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.11 -2.34 5.96 -24.46 -0.15 -2.49 16 12 C 0.09 1.57 6.70 -2.41 -0.02 1.55 16 13 N -0.61 -11.72 3.32 -170.37 -0.57 -12.29 16 14 C 0.52 9.37 7.61 -10.99 -0.08 9.28 16 15 O -0.55 -11.70 15.01 5.55 0.08 -11.62 16 16 C -0.13 -1.69 4.12 -27.88 -0.11 -1.80 16 17 C -0.05 -0.68 2.54 -90.72 -0.23 -0.91 16 18 H 0.09 1.22 8.01 -51.92 -0.42 0.81 16 19 C -0.13 -1.80 9.19 -35.69 -0.33 -2.13 16 20 C -0.19 -2.19 10.78 -35.69 -0.38 -2.58 16 21 C -0.10 -0.93 6.81 -26.81 -0.18 -1.11 16 22 C -0.12 -1.19 6.71 -25.00 -0.17 -1.36 16 23 C 0.11 2.42 6.45 -3.06 -0.02 2.40 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 26 H 0.08 1.81 7.77 -51.93 -0.40 1.41 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 31 H 0.13 1.97 7.31 -52.48 -0.38 1.59 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.39 7.63 -51.93 -0.40 0.99 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -28.94 308.08 -8.62 -37.56 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.14 Total: 0.34 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.31 Total: -10.70 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.13 Total: -35.96 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.94 -8.62 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.712 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds