Wall clock time and date at job start Mon Mar 30 2020 07:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48494 * 109.46928 * 269.99568 * 3 2 1 5 5 H 1.48496 * 109.47064 * 30.00212 * 3 2 1 6 6 H 1.48501 * 109.46565 * 149.99845 * 3 2 1 7 7 C 1.37867 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00170 * 359.97438 * 7 2 1 10 10 H 1.08992 * 110.64187 * 56.85930 * 9 7 2 11 11 C 1.55157 * 110.71797 * 293.52209 * 9 7 2 12 12 C 1.55136 * 101.48648 * 205.96921 * 11 9 7 13 13 N 1.47426 * 104.72140 * 37.29694 * 12 11 9 14 14 C 1.34769 * 125.64991 * 155.81744 * 13 12 11 15 15 O 1.21286 * 120.00287 * 179.69011 * 14 13 12 16 16 C 1.50706 * 120.00123 * 359.69595 * 14 13 12 17 17 C 1.52995 * 109.47440 * 180.02562 * 16 14 13 18 18 H 1.09009 * 110.43143 * 304.10199 * 17 16 14 19 19 C 1.51106 * 110.38927 * 66.44995 * 17 16 14 20 20 C 1.30522 * 111.10613 * 135.25078 * 19 17 16 21 21 C 1.51110 * 111.10106 * 0.02562 * 20 19 17 22 22 C 1.54633 * 110.38709 * 181.75542 * 17 16 14 23 23 C 1.47022 * 108.70320 * 335.55520 * 13 12 11 24 24 H 0.96996 * 119.99906 * 0.02562 * 1 2 3 25 25 H 1.08994 * 111.00662 * 324.20849 * 11 9 7 26 26 H 1.09000 * 111.00684 * 88.06410 * 11 9 7 27 27 H 1.08997 * 110.49668 * 278.45781 * 12 11 9 28 28 H 1.08993 * 110.34631 * 156.06063 * 12 11 9 29 29 H 1.08996 * 109.47245 * 59.99425 * 16 14 13 30 30 H 1.09004 * 109.46848 * 299.99702 * 16 14 13 31 31 H 1.08005 * 124.44451 * 315.27156 * 19 17 16 32 32 H 1.07996 * 124.45308 * 180.02562 * 20 19 17 33 33 H 1.08996 * 110.38650 * 102.37939 * 21 20 19 34 34 H 1.09003 * 110.38174 * 224.75606 * 21 20 19 35 35 H 1.09001 * 111.03499 * 334.58024 * 22 17 16 36 36 H 1.08999 * 111.03641 * 98.52287 * 22 17 16 37 37 H 1.09000 * 109.88648 * 120.70559 * 23 13 12 38 38 H 1.09005 * 109.88235 * 241.87191 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5757 -2.5529 -0.8543 11 6 0.4755 -2.6852 1.3304 12 6 0.3776 -4.2310 1.4174 13 7 1.6656 -4.7182 0.8909 14 6 2.2309 -5.9080 1.1755 15 8 3.2959 -6.2078 0.6784 16 6 1.5398 -6.8661 2.1112 17 6 2.3869 -8.1311 2.2631 18 1 2.5842 -8.5762 1.2878 19 6 3.6846 -7.8141 2.9693 20 6 3.9505 -8.7045 3.8859 21 6 2.8747 -9.7641 3.9434 22 6 1.6756 -9.1482 3.1854 23 6 2.2281 -3.6937 -0.0011 24 1 -0.4850 0.8400 -0.0004 25 1 1.0380 -2.2781 2.1705 26 1 -0.5156 -2.2354 1.2712 27 1 -0.4457 -4.5964 0.8036 28 1 0.2481 -4.5448 2.4531 29 1 0.5629 -7.1290 1.7057 30 1 1.4137 -6.3946 3.0859 31 1 4.3098 -6.9624 2.7453 32 1 4.8245 -8.6863 4.5201 33 1 3.2114 -10.6743 3.4472 34 1 2.6025 -9.9730 4.9780 35 1 0.9952 -8.6445 3.8721 36 1 1.1511 -9.9051 2.6023 37 1 3.2030 -3.3754 0.3682 38 1 2.3243 -4.0934 -1.0106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701337476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:07 Heat of formation + Delta-G solvation = -47.455812 kcal Electronic energy + Delta-G solvation = -18070.832346 eV Core-core repulsion = 15298.064499 eV Total energy + Delta-G solvation = -2772.767848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13226 -39.46888 -38.13848 -34.97282 -32.89677 -31.69398 -30.05698 -29.73923 -27.39729 -25.81098 -23.72255 -21.68643 -21.26682 -20.29183 -19.43983 -18.69343 -17.82697 -17.00462 -16.75887 -16.57513 -16.36058 -15.54612 -15.20654 -14.45173 -14.28631 -13.96285 -13.45612 -13.17516 -13.08588 -12.91780 -12.81675 -12.74562 -12.66907 -12.63449 -12.30698 -12.05642 -11.98793 -11.67776 -11.59433 -11.36641 -10.98137 -10.71850 -10.52225 -9.77320 -9.54839 -8.17737 -6.26849 1.40316 1.41205 1.42878 1.52428 1.70298 2.14771 2.43193 3.14245 3.54616 3.75558 3.90681 4.01159 4.07306 4.31607 4.35407 4.45160 4.47095 4.54663 4.60096 4.69423 4.73861 4.78274 4.80154 5.00102 5.02705 5.10637 5.13705 5.27257 5.32147 5.37475 5.45584 5.56714 5.71214 5.76268 5.86060 6.00590 6.27135 6.70590 6.79228 7.23435 7.40675 8.91650 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047118 B = 0.004298 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.105106 B = 6513.323130 C = 6718.482307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.019 0.981 11 C -0.103 4.103 12 C 0.103 3.897 13 N -0.618 5.618 14 C 0.513 3.487 15 O -0.592 6.592 16 C -0.116 4.116 17 C -0.054 4.054 18 H 0.069 0.931 19 C -0.172 4.172 20 C -0.172 4.172 21 C -0.097 4.097 22 C -0.113 4.113 23 C 0.121 3.879 24 H 0.264 0.736 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -16.174 8.959 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.018 3.982 10 H 0.037 0.963 11 C -0.141 4.141 12 C -0.019 4.019 13 N -0.351 5.351 14 C 0.304 3.696 15 O -0.473 6.473 16 C -0.156 4.156 17 C -0.073 4.073 18 H 0.087 0.913 19 C -0.190 4.190 20 C -0.190 4.190 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.002 4.002 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.929 -16.289 8.721 18.500 hybrid contribution 0.821 1.537 -0.552 1.828 sum -0.108 -14.752 8.169 16.863 Atomic orbital electron populations 1.70024 1.06877 1.27582 1.50452 1.25619 0.95715 1.02000 0.94377 0.85635 0.78695 0.79558 0.78249 1.20209 1.20393 1.19797 1.21323 0.92742 0.91611 1.51916 0.93395 1.19637 0.92928 0.90937 0.94659 0.96254 1.22579 1.00724 0.92628 0.98216 1.22602 0.84428 0.94810 1.00021 1.48873 1.23157 1.16405 1.46624 1.21261 0.85027 0.81169 0.82166 1.90633 1.24400 1.76717 1.55595 1.21743 1.00465 0.94057 0.99314 1.20837 0.92726 0.94352 0.99353 0.91300 1.23272 0.98581 0.99491 0.97637 1.23537 1.00421 0.96548 0.98499 1.21398 0.93140 0.97165 1.01732 1.22578 0.97281 0.97445 0.97775 1.21944 0.97537 0.88684 0.92045 0.92679 0.93594 0.91227 0.90247 0.88276 0.86297 0.87313 0.88890 0.85269 0.90122 0.89485 0.89405 0.89236 0.94341 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.40 12.50 21.44 0.27 -50.13 16 2 C 0.02 1.24 5.36 84.65 0.45 1.70 16 3 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -29.44 8.47 25.60 0.22 -29.22 16 8 H 0.05 2.66 7.53 -2.91 -0.02 2.63 16 9 C 0.04 1.84 2.78 -10.35 -0.03 1.81 16 10 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 11 C -0.10 -4.38 5.96 32.07 0.19 -4.18 16 12 C 0.10 3.33 6.70 86.93 0.58 3.91 16 13 N -0.62 -23.34 3.32 -811.33 -2.70 -26.04 16 14 C 0.51 18.22 7.61 87.66 0.67 18.89 16 15 O -0.59 -25.61 15.01 -3.05 -0.05 -25.65 16 16 C -0.12 -2.77 4.12 29.85 0.12 -2.65 16 17 C -0.05 -1.27 2.54 -10.86 -0.03 -1.29 16 18 H 0.07 1.85 8.01 -2.38 -0.02 1.83 16 19 C -0.17 -4.59 9.19 26.27 0.24 -4.35 16 20 C -0.17 -3.61 10.78 26.27 0.28 -3.33 16 21 C -0.10 -1.51 6.81 30.54 0.21 -1.30 16 22 C -0.11 -1.75 6.71 31.71 0.21 -1.54 16 23 C 0.12 5.48 6.45 86.73 0.56 6.04 16 24 H 0.26 13.88 8.31 -92.71 -0.77 13.10 16 25 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 26 H 0.07 3.11 7.77 -2.39 -0.02 3.09 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.10 2.47 7.48 -2.39 -0.02 2.46 16 29 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.11 2.25 7.85 -2.39 -0.02 2.23 16 31 H 0.09 3.07 7.31 -2.91 -0.02 3.04 16 32 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.13 7.91 -2.39 -0.02 1.11 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.04 1.87 7.63 -2.39 -0.02 1.85 16 38 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -64.84 308.08 4.25 -60.59 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.02 Total: 11.77 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 3.68 Total: -15.52 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.43 Total: -76.17 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -64.84 4.25 -60.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.135 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds