Wall clock time and date at job start Mon Mar 30 2020 07:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00455 * 2 1 4 4 H 1.48501 * 109.46601 * 270.00100 * 3 2 1 5 5 H 1.48501 * 109.46973 * 29.99533 * 3 2 1 6 6 H 1.48495 * 109.47390 * 150.00107 * 3 2 1 7 7 C 1.37881 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.88577 * 303.87581 * 9 7 2 11 11 C 1.55405 * 111.03892 * 67.68091 * 9 7 2 12 12 C 1.54325 * 102.82616 * 153.47058 * 11 9 7 13 13 N 1.47018 * 107.40412 * 337.97548 * 12 11 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 11 15 15 O 1.21275 * 120.00167 * 180.02562 * 14 13 12 16 16 C 1.50694 * 119.99872 * 0.02817 * 14 13 12 17 17 C 1.53000 * 109.47301 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.34474 * 304.16210 * 17 16 14 19 19 C 1.51097 * 110.38644 * 66.45237 * 17 16 14 20 20 C 1.30529 * 111.10573 * 135.25249 * 19 17 16 21 21 C 1.51109 * 111.10164 * 359.97438 * 20 19 17 22 22 C 1.54630 * 104.72824 * 343.56614 * 21 20 19 23 23 C 1.47426 * 108.70517 * 358.86539 * 13 12 11 24 24 H 0.97002 * 119.99725 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.69068 * 35.18317 * 11 9 7 26 26 H 1.09002 * 110.85092 * 271.83311 * 11 9 7 27 27 H 1.09002 * 109.88192 * 218.47989 * 12 11 9 28 28 H 1.09000 * 109.88128 * 97.46841 * 12 11 9 29 29 H 1.08997 * 109.47569 * 299.99781 * 16 14 13 30 30 H 1.09007 * 109.47441 * 59.99852 * 16 14 13 31 31 H 1.07995 * 124.44931 * 315.22703 * 19 17 16 32 32 H 1.07995 * 124.45305 * 179.97438 * 20 19 17 33 33 H 1.08997 * 110.38387 * 102.37851 * 21 20 19 34 34 H 1.09004 * 110.38853 * 224.75154 * 21 20 19 35 35 H 1.09006 * 111.03715 * 266.60566 * 22 21 20 36 36 H 1.08996 * 111.03903 * 142.66349 * 22 21 20 37 37 H 1.08999 * 110.36956 * 142.96999 * 23 13 12 38 38 H 1.09003 * 110.36599 * 265.28903 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5646 -2.5516 0.8458 11 6 0.4954 -2.7072 -1.3415 12 6 0.3978 -4.2438 -1.4451 13 7 1.4588 -4.8099 -0.5993 14 6 1.6913 -6.1231 -0.4044 15 8 2.5984 -6.4776 0.3183 16 6 0.8242 -7.1508 -1.0846 17 6 1.2976 -8.5536 -0.6986 18 1 2.3535 -8.6769 -0.9396 19 6 1.0609 -8.8027 0.7728 20 6 0.5447 -9.9848 0.9723 21 6 0.3505 -10.7210 -0.3330 22 6 0.4484 -9.6259 -1.4203 23 6 2.2257 -3.7032 0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 1.0696 -2.3002 -2.1738 26 1 -0.4976 -2.2595 -1.3011 27 1 0.5425 -4.5556 -2.4795 28 1 -0.5771 -4.5781 -1.0902 29 1 -0.2112 -7.0175 -0.7712 30 1 0.8953 -7.0284 -2.1654 31 1 1.2893 -8.0957 1.5566 32 1 0.2898 -10.3844 1.9427 33 1 1.1362 -11.4638 -0.4705 34 1 -0.6305 -11.1954 -0.3591 35 1 -0.5380 -9.2380 -1.6749 36 1 0.9610 -9.9993 -2.3067 37 1 2.5184 -3.9538 1.0207 38 1 3.1051 -3.4796 -0.6028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701337478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:12 Heat of formation + Delta-G solvation = -32.511322 kcal Electronic energy + Delta-G solvation = -18042.217564 eV Core-core repulsion = 15270.097758 eV Total energy + Delta-G solvation = -2772.119806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78247 -38.33030 -36.57325 -33.04785 -31.61389 -30.13258 -28.94160 -28.37943 -25.90296 -24.29416 -22.15884 -20.54517 -19.78863 -18.99637 -18.28100 -16.77567 -16.48932 -15.75974 -15.57935 -14.91905 -14.57388 -14.46895 -13.81716 -12.74890 -12.70879 -12.49347 -12.22668 -11.90006 -11.83353 -11.67442 -11.53745 -11.29937 -11.23955 -11.08750 -11.04385 -10.74358 -10.70774 -10.48473 -9.82898 -9.48911 -9.23375 -9.00660 -8.85788 -8.48665 -7.97178 -6.12347 -4.15687 2.35566 3.10631 3.26427 3.33600 3.37112 3.60641 4.37652 4.58134 4.60734 4.86301 5.04120 5.21707 5.25264 5.41060 5.48029 5.53438 5.62997 5.65562 5.73528 5.81930 5.84928 5.93057 6.01895 6.16221 6.24329 6.29540 6.37822 6.61354 6.64408 6.82347 6.96204 6.98385 7.10130 7.42368 7.68974 7.87389 8.16977 8.27913 8.67664 8.86712 9.49412 10.97875 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057668 B = 0.004141 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.423361 B = 6759.413288 C = 6922.979839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.045 3.955 10 H 0.042 0.958 11 C -0.113 4.113 12 C 0.096 3.904 13 N -0.613 5.613 14 C 0.519 3.481 15 O -0.555 6.555 16 C -0.128 4.128 17 C -0.054 4.054 18 H 0.088 0.912 19 C -0.133 4.133 20 C -0.191 4.191 21 C -0.097 4.097 22 C -0.123 4.123 23 C 0.107 3.893 24 H 0.262 0.738 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -15.434 -3.978 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.026 3.974 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.027 4.027 13 N -0.346 5.346 14 C 0.308 3.692 15 O -0.434 6.434 16 C -0.168 4.168 17 C -0.073 4.073 18 H 0.107 0.893 19 C -0.150 4.150 20 C -0.209 4.209 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.014 4.014 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.961 -15.572 -3.597 16.102 hybrid contribution 0.333 1.055 -0.028 1.106 sum -1.628 -14.517 -3.625 15.051 Atomic orbital electron populations 1.69948 1.05945 1.26792 1.49948 1.24960 0.94873 0.99172 0.94698 0.86555 0.79919 0.83178 0.78155 1.20617 1.21197 1.19794 1.20961 0.92981 0.89844 1.51574 0.92225 1.19882 0.92775 0.91097 0.93613 0.94020 1.22692 1.02540 0.89015 1.00933 1.22230 0.89772 0.97715 0.93010 1.48791 1.33201 1.05201 1.47404 1.20242 0.84969 0.82077 0.81910 1.90647 1.33109 1.80095 1.39579 1.21673 1.00270 0.93452 1.01370 1.20832 1.00444 0.92756 0.93220 0.89345 1.23376 0.97171 0.97240 0.97251 1.23209 1.02742 0.96723 0.98243 1.21310 1.01427 0.97818 0.92832 1.22568 1.00213 0.95541 0.97685 1.22575 0.95628 0.86164 0.97033 0.92866 0.92129 0.90258 0.92962 0.92620 0.89128 0.89199 0.85569 0.86222 0.91118 0.91555 0.90905 0.90979 0.92104 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 12.62 55.43 0.70 -23.74 16 2 C 0.07 1.74 5.37 -17.82 -0.10 1.65 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.62 8.50 -34.44 -0.29 -13.92 16 8 H 0.06 1.57 7.77 -52.48 -0.41 1.16 16 9 C 0.05 1.09 2.85 -89.49 -0.25 0.84 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 11 C -0.11 -2.40 5.92 -24.76 -0.15 -2.55 16 12 C 0.10 1.66 6.48 -3.07 -0.02 1.64 16 13 N -0.61 -11.73 3.33 -170.52 -0.57 -12.30 16 14 C 0.52 9.37 7.61 -10.99 -0.08 9.28 16 15 O -0.55 -11.64 14.94 5.56 0.08 -11.56 16 16 C -0.13 -1.70 4.31 -27.89 -0.12 -1.82 16 17 C -0.05 -0.68 2.55 -90.70 -0.23 -0.91 16 18 H 0.09 1.22 8.01 -51.93 -0.42 0.81 16 19 C -0.13 -1.80 9.19 -35.70 -0.33 -2.13 16 20 C -0.19 -2.19 10.78 -35.69 -0.38 -2.57 16 21 C -0.10 -0.93 6.81 -26.83 -0.18 -1.11 16 22 C -0.12 -1.19 6.71 -25.00 -0.17 -1.36 16 23 C 0.11 2.34 6.35 -2.53 -0.02 2.32 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 26 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.13 1.97 7.31 -52.49 -0.38 1.58 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 38 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -28.84 309.61 -8.68 -37.52 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.22 Total: 0.42 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.32 Total: -10.64 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.13 Total: -36.04 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.84 -8.68 -37.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.007 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds