Wall clock time and date at job start Mon Mar 30 2020 07:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00455 * 2 1 4 4 H 1.48501 * 109.46601 * 270.00100 * 3 2 1 5 5 H 1.48501 * 109.46973 * 29.99533 * 3 2 1 6 6 H 1.48495 * 109.47390 * 150.00107 * 3 2 1 7 7 C 1.37881 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.88577 * 303.87581 * 9 7 2 11 11 C 1.55405 * 111.03892 * 67.68091 * 9 7 2 12 12 C 1.54325 * 102.82616 * 153.47058 * 11 9 7 13 13 N 1.47018 * 107.40412 * 337.97548 * 12 11 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 11 15 15 O 1.21275 * 120.00167 * 180.02562 * 14 13 12 16 16 C 1.50694 * 119.99872 * 0.02817 * 14 13 12 17 17 C 1.53000 * 109.47301 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.34474 * 304.16210 * 17 16 14 19 19 C 1.51097 * 110.38644 * 66.45237 * 17 16 14 20 20 C 1.30529 * 111.10573 * 135.25249 * 19 17 16 21 21 C 1.51109 * 111.10164 * 359.97438 * 20 19 17 22 22 C 1.54630 * 104.72824 * 343.56614 * 21 20 19 23 23 C 1.47426 * 108.70517 * 358.86539 * 13 12 11 24 24 H 0.97002 * 119.99725 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.69068 * 35.18317 * 11 9 7 26 26 H 1.09002 * 110.85092 * 271.83311 * 11 9 7 27 27 H 1.09002 * 109.88192 * 218.47989 * 12 11 9 28 28 H 1.09000 * 109.88128 * 97.46841 * 12 11 9 29 29 H 1.08997 * 109.47569 * 299.99781 * 16 14 13 30 30 H 1.09007 * 109.47441 * 59.99852 * 16 14 13 31 31 H 1.07995 * 124.44931 * 315.22703 * 19 17 16 32 32 H 1.07995 * 124.45305 * 179.97438 * 20 19 17 33 33 H 1.08997 * 110.38387 * 102.37851 * 21 20 19 34 34 H 1.09004 * 110.38853 * 224.75154 * 21 20 19 35 35 H 1.09006 * 111.03715 * 266.60566 * 22 21 20 36 36 H 1.08996 * 111.03903 * 142.66349 * 22 21 20 37 37 H 1.08999 * 110.36956 * 142.96999 * 23 13 12 38 38 H 1.09003 * 110.36599 * 265.28903 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5646 -2.5516 0.8458 11 6 0.4954 -2.7072 -1.3415 12 6 0.3978 -4.2438 -1.4451 13 7 1.4588 -4.8099 -0.5993 14 6 1.6913 -6.1231 -0.4044 15 8 2.5984 -6.4776 0.3183 16 6 0.8242 -7.1508 -1.0846 17 6 1.2976 -8.5536 -0.6986 18 1 2.3535 -8.6769 -0.9396 19 6 1.0609 -8.8027 0.7728 20 6 0.5447 -9.9848 0.9723 21 6 0.3505 -10.7210 -0.3330 22 6 0.4484 -9.6259 -1.4203 23 6 2.2257 -3.7032 0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 1.0696 -2.3002 -2.1738 26 1 -0.4976 -2.2595 -1.3011 27 1 0.5425 -4.5556 -2.4795 28 1 -0.5771 -4.5781 -1.0902 29 1 -0.2112 -7.0175 -0.7712 30 1 0.8953 -7.0284 -2.1654 31 1 1.2893 -8.0957 1.5566 32 1 0.2898 -10.3844 1.9427 33 1 1.1362 -11.4638 -0.4705 34 1 -0.6305 -11.1954 -0.3591 35 1 -0.5380 -9.2380 -1.6749 36 1 0.9610 -9.9993 -2.3067 37 1 2.5184 -3.9538 1.0207 38 1 3.1051 -3.4796 -0.6028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701337478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:11 Heat of formation + Delta-G solvation = -47.975562 kcal Electronic energy + Delta-G solvation = -18042.888143 eV Core-core repulsion = 15270.097758 eV Total energy + Delta-G solvation = -2772.790386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13176 -39.46598 -38.13042 -34.96695 -32.90149 -31.69878 -30.06827 -29.74409 -27.40026 -25.81344 -23.69080 -21.69727 -21.29381 -20.30517 -19.45036 -18.55014 -17.95845 -17.02462 -16.75867 -16.55911 -16.10201 -15.79563 -15.16684 -14.42295 -14.28774 -13.90138 -13.60164 -13.29378 -12.99723 -12.91377 -12.84581 -12.74848 -12.65633 -12.55848 -12.30129 -12.05279 -11.98786 -11.71177 -11.59943 -11.33856 -10.98373 -10.71994 -10.51388 -9.77471 -9.53315 -8.17326 -6.26946 1.40166 1.42598 1.44204 1.53954 1.69954 2.14708 2.44162 3.14795 3.55201 3.75487 3.91119 4.01029 4.06452 4.29574 4.34601 4.43747 4.49831 4.54479 4.60287 4.69026 4.73678 4.78730 4.80648 4.99871 5.02273 5.08335 5.13110 5.26642 5.31932 5.39755 5.45261 5.55733 5.71199 5.75153 5.85549 6.00410 6.26529 6.71026 6.79706 7.22905 7.41035 8.92477 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057668 B = 0.004141 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.423361 B = 6759.413288 C = 6922.979839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.039 3.961 10 H 0.009 0.991 11 C -0.105 4.105 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.513 3.487 15 O -0.591 6.591 16 C -0.117 4.117 17 C -0.054 4.054 18 H 0.070 0.930 19 C -0.172 4.172 20 C -0.172 4.172 21 C -0.097 4.097 22 C -0.114 4.114 23 C 0.118 3.882 24 H 0.264 0.736 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -16.986 -5.756 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.028 0.972 11 C -0.143 4.143 12 C -0.017 4.017 13 N -0.352 5.352 14 C 0.305 3.695 15 O -0.473 6.473 16 C -0.156 4.156 17 C -0.072 4.072 18 H 0.088 0.912 19 C -0.190 4.190 20 C -0.190 4.190 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.005 4.005 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.873 -17.139 -5.389 18.195 hybrid contribution 0.630 1.492 0.622 1.735 sum -2.242 -15.647 -4.767 16.510 Atomic orbital electron populations 1.70045 1.07077 1.27583 1.50516 1.25672 0.95686 1.02205 0.94344 0.85590 0.78599 0.79265 0.78418 1.19727 1.20863 1.19690 1.21265 0.92993 0.91333 1.51818 0.92820 1.19778 0.92898 0.91276 0.94102 0.97234 1.22465 1.00906 0.92257 0.98699 1.22228 0.90183 0.94446 0.94827 1.48879 1.33395 1.05193 1.47729 1.21220 0.84930 0.82086 0.81306 1.90631 1.34960 1.80521 1.41171 1.21740 0.99643 0.91861 1.02368 1.20842 1.00095 0.93406 0.92902 0.91223 1.23274 1.00198 0.98073 0.97471 1.23539 0.99816 0.95757 0.99889 1.21394 1.02923 0.97835 0.91282 1.22578 1.00416 0.94186 0.97906 1.22210 0.95324 0.86689 0.96287 0.92740 0.92822 0.91727 0.89247 0.90449 0.87510 0.86296 0.88878 0.85265 0.90090 0.89499 0.89477 0.89199 0.93932 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.96 12.62 21.45 0.27 -50.69 16 2 C 0.02 1.12 5.37 84.66 0.45 1.58 16 3 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.54 -29.06 8.50 25.60 0.22 -28.84 16 8 H 0.05 2.89 7.77 -2.91 -0.02 2.87 16 9 C 0.04 1.92 2.85 -10.06 -0.03 1.89 16 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 11 C -0.10 -4.44 5.92 31.87 0.19 -4.25 16 12 C 0.11 3.42 6.48 86.73 0.56 3.98 16 13 N -0.62 -23.37 3.33 -811.80 -2.70 -26.07 16 14 C 0.51 18.25 7.61 87.66 0.67 18.92 16 15 O -0.59 -25.48 14.94 -3.01 -0.05 -25.52 16 16 C -0.12 -2.81 4.31 29.85 0.13 -2.68 16 17 C -0.05 -1.27 2.55 -10.85 -0.03 -1.29 16 18 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 19 C -0.17 -4.62 9.19 26.26 0.24 -4.38 16 20 C -0.17 -3.63 10.78 26.26 0.28 -3.35 16 21 C -0.10 -1.52 6.81 30.53 0.21 -1.31 16 22 C -0.11 -1.77 6.71 31.71 0.21 -1.56 16 23 C 0.12 5.28 6.35 86.86 0.55 5.84 16 24 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.05 2.31 8.03 -2.39 -0.02 2.29 16 26 H 0.06 2.91 7.86 -2.39 -0.02 2.89 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.09 3.08 7.31 -2.91 -0.02 3.06 16 32 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.09 1.14 7.91 -2.38 -0.02 1.12 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.04 2.01 8.04 -2.39 -0.02 2.00 16 38 H 0.05 2.39 8.01 -2.39 -0.02 2.37 16 Total: -1.00 -64.58 309.61 4.22 -60.35 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.01 Total: 12.72 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.66 Total: -15.46 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -2.43 Total: -76.75 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.52 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.58 4.22 -60.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.376 kcal (2) G-P(sol) polarization free energy of solvation -64.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds