Wall clock time and date at job start Mon Mar 30 2020 07:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48494 * 109.46998 * 270.00062 * 3 2 1 5 5 H 1.48500 * 109.46802 * 29.99844 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99720 * 3 2 1 7 7 C 1.37877 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99990 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.78140 * 56.75924 * 9 7 2 11 11 C 1.55157 * 110.71802 * 293.52242 * 9 7 2 12 12 C 1.55140 * 101.48246 * 205.97094 * 11 9 7 13 13 N 1.47415 * 104.72237 * 37.29290 * 12 11 9 14 14 C 1.34783 * 125.64629 * 155.81820 * 13 12 11 15 15 O 1.21278 * 119.99976 * 179.69450 * 14 13 12 16 16 C 1.50695 * 119.99935 * 359.69353 * 14 13 12 17 17 C 1.52998 * 109.47378 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.34385 * 55.82763 * 17 16 14 19 19 C 1.51106 * 110.38373 * 293.54526 * 17 16 14 20 20 C 1.30528 * 111.10324 * 224.74748 * 19 17 16 21 21 C 1.51097 * 111.10203 * 0.02562 * 20 19 17 22 22 C 1.54631 * 110.38947 * 178.24279 * 17 16 14 23 23 C 1.47023 * 108.70712 * 335.55294 * 13 12 11 24 24 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 25 25 H 1.08997 * 111.00396 * 324.20653 * 11 9 7 26 26 H 1.09001 * 111.00568 * 88.02279 * 11 9 7 27 27 H 1.09007 * 110.49155 * 278.45101 * 12 11 9 28 28 H 1.09002 * 110.34112 * 156.06010 * 12 11 9 29 29 H 1.08995 * 109.47177 * 59.99655 * 16 14 13 30 30 H 1.09000 * 109.47132 * 299.99947 * 16 14 13 31 31 H 1.07997 * 124.44647 * 44.48676 * 19 17 16 32 32 H 1.07996 * 124.44406 * 179.97438 * 20 19 17 33 33 H 1.08998 * 110.38609 * 257.61953 * 21 20 19 34 34 H 1.09001 * 110.48258 * 135.29661 * 21 20 19 35 35 H 1.09002 * 111.03445 * 261.47501 * 22 17 16 36 36 H 1.09000 * 111.03674 * 25.37340 * 22 17 16 37 37 H 1.09007 * 109.88016 * 120.70431 * 23 13 12 38 38 H 1.08998 * 109.88657 * 241.87113 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5741 -2.5550 -0.8521 11 6 0.4743 -2.6846 1.3309 12 6 0.3763 -4.2304 1.4185 13 7 1.6646 -4.7178 0.8931 14 6 2.2297 -5.9077 1.1787 15 8 3.2950 -6.2077 0.6826 16 6 1.5379 -6.8652 2.1143 17 6 2.3847 -8.1302 2.2673 18 1 3.3898 -7.8751 2.6033 19 6 2.4428 -8.8860 0.9602 20 6 2.2592 -10.1646 1.1480 21 6 2.0476 -10.4746 2.6117 22 6 1.7152 -9.1101 3.2586 23 6 2.2279 -3.6938 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 1.0362 -2.2772 2.1713 26 1 -0.5165 -2.2342 1.2710 27 1 -0.4466 -4.5960 0.8042 28 1 0.2460 -4.5438 2.4543 29 1 0.5613 -7.1282 1.7082 30 1 1.4111 -6.3933 3.0887 31 1 2.6096 -8.4279 -0.0035 32 1 2.2579 -10.9037 0.3606 33 1 2.9567 -10.8892 3.0473 34 1 1.2163 -11.1680 2.7384 35 1 2.1600 -9.0283 4.2503 36 1 0.6380 -8.9489 3.3007 37 1 3.2025 -3.3754 0.3711 38 1 2.3248 -4.0939 -1.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701337479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:16 Heat of formation + Delta-G solvation = -31.872839 kcal Electronic energy + Delta-G solvation = -18050.434140 eV Core-core repulsion = 15278.342021 eV Total energy + Delta-G solvation = -2772.092119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78374 -38.33737 -36.57989 -33.04985 -31.61548 -30.12021 -28.95124 -28.36393 -25.90392 -24.28586 -22.18576 -20.56494 -19.76815 -18.96773 -18.28451 -16.82759 -16.47735 -15.75201 -15.62501 -14.86727 -14.61792 -14.48208 -13.79485 -12.73507 -12.59801 -12.54219 -12.29821 -11.90539 -11.84659 -11.71354 -11.34813 -11.28758 -11.27229 -11.08531 -11.00100 -10.82084 -10.71856 -10.48847 -9.82006 -9.50769 -9.22825 -8.99702 -8.86976 -8.49660 -7.96002 -6.12064 -4.15088 2.34116 3.11408 3.26924 3.33813 3.37427 3.60832 4.37941 4.57752 4.60173 4.85679 5.03571 5.21586 5.24541 5.40454 5.47270 5.53211 5.58855 5.66052 5.74149 5.83945 5.89146 5.93614 5.99109 6.15231 6.24720 6.28561 6.33365 6.61171 6.66232 6.85030 6.94941 6.99612 7.11156 7.43754 7.68830 7.86972 8.18093 8.27807 8.68550 8.86976 9.49833 10.97961 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057881 B = 0.004162 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.638757 B = 6725.257339 C = 6917.812772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.042 0.958 11 C -0.110 4.110 12 C 0.091 3.909 13 N -0.612 5.612 14 C 0.519 3.481 15 O -0.555 6.555 16 C -0.127 4.127 17 C -0.054 4.054 18 H 0.089 0.911 19 C -0.132 4.132 20 C -0.191 4.191 21 C -0.097 4.097 22 C -0.122 4.122 23 C 0.111 3.889 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -15.201 6.104 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.060 0.940 11 C -0.149 4.149 12 C -0.031 4.031 13 N -0.345 5.345 14 C 0.307 3.693 15 O -0.434 6.434 16 C -0.167 4.167 17 C -0.073 4.073 18 H 0.107 0.893 19 C -0.150 4.150 20 C -0.209 4.209 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.011 4.011 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.492 -15.295 5.869 16.390 hybrid contribution 0.339 1.025 -0.089 1.083 sum -0.152 -14.270 5.779 15.397 Atomic orbital electron populations 1.69941 1.05910 1.26773 1.50074 1.24954 0.94886 0.99152 0.94740 0.86560 0.79889 0.83189 0.78204 1.20596 1.21199 1.19832 1.21041 0.92929 0.89887 1.51455 0.92283 1.19726 0.92759 0.91101 0.94003 0.93999 1.22810 1.02316 0.89206 1.00567 1.22594 0.84961 0.98268 0.97320 1.48784 1.22423 1.16407 1.46862 1.20254 0.85407 0.81227 0.82407 1.90647 1.22590 1.75971 1.54207 1.21669 1.00108 0.95026 0.99932 1.20830 0.99551 0.93236 0.93669 0.89304 1.23371 0.97883 0.95027 0.98731 1.23202 1.03728 0.96971 0.97012 1.21302 1.01143 0.97476 0.93465 1.22560 1.00840 0.94336 0.98262 1.22319 0.98861 0.88259 0.91664 0.92880 0.92178 0.90066 0.92295 0.92210 0.89205 0.89112 0.85619 0.86244 0.91122 0.91558 0.90946 0.90919 0.92181 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 12.50 55.43 0.69 -23.67 16 2 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.68 8.47 -34.44 -0.29 -13.97 16 8 H 0.06 1.57 7.53 -52.49 -0.40 1.18 16 9 C 0.04 1.03 2.78 -89.94 -0.25 0.78 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.35 5.96 -24.46 -0.15 -2.49 16 12 C 0.09 1.57 6.70 -2.41 -0.02 1.56 16 13 N -0.61 -11.73 3.32 -170.38 -0.57 -12.29 16 14 C 0.52 9.37 7.61 -10.98 -0.08 9.29 16 15 O -0.55 -11.70 15.01 5.56 0.08 -11.61 16 16 C -0.13 -1.69 4.12 -27.89 -0.11 -1.80 16 17 C -0.05 -0.69 2.54 -90.72 -0.23 -0.92 16 18 H 0.09 1.24 8.01 -51.93 -0.42 0.83 16 19 C -0.13 -1.77 9.19 -35.70 -0.33 -2.10 16 20 C -0.19 -2.15 10.78 -35.70 -0.38 -2.54 16 21 C -0.10 -0.92 6.81 -26.84 -0.18 -1.10 16 22 C -0.12 -1.19 6.71 -25.02 -0.17 -1.36 16 23 C 0.11 2.42 6.45 -3.06 -0.02 2.40 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 26 H 0.08 1.81 7.77 -51.93 -0.40 1.41 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 31 H 0.13 1.92 7.31 -52.49 -0.38 1.53 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.06 1.39 7.63 -51.93 -0.40 1.00 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -28.93 308.06 -8.62 -37.55 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.14 Total: 0.27 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.31 Total: -10.61 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.13 Total: -35.96 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.93 -8.62 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.674 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds