Wall clock time and date at job start Mon Mar 30 2020 07:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48494 * 109.46998 * 270.00062 * 3 2 1 5 5 H 1.48500 * 109.46802 * 29.99844 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99720 * 3 2 1 7 7 C 1.37877 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99990 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.78140 * 56.75924 * 9 7 2 11 11 C 1.55157 * 110.71802 * 293.52242 * 9 7 2 12 12 C 1.55140 * 101.48246 * 205.97094 * 11 9 7 13 13 N 1.47415 * 104.72237 * 37.29290 * 12 11 9 14 14 C 1.34783 * 125.64629 * 155.81820 * 13 12 11 15 15 O 1.21278 * 119.99976 * 179.69450 * 14 13 12 16 16 C 1.50695 * 119.99935 * 359.69353 * 14 13 12 17 17 C 1.52998 * 109.47378 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.34385 * 55.82763 * 17 16 14 19 19 C 1.51106 * 110.38373 * 293.54526 * 17 16 14 20 20 C 1.30528 * 111.10324 * 224.74748 * 19 17 16 21 21 C 1.51097 * 111.10203 * 0.02562 * 20 19 17 22 22 C 1.54631 * 110.38947 * 178.24279 * 17 16 14 23 23 C 1.47023 * 108.70712 * 335.55294 * 13 12 11 24 24 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 25 25 H 1.08997 * 111.00396 * 324.20653 * 11 9 7 26 26 H 1.09001 * 111.00568 * 88.02279 * 11 9 7 27 27 H 1.09007 * 110.49155 * 278.45101 * 12 11 9 28 28 H 1.09002 * 110.34112 * 156.06010 * 12 11 9 29 29 H 1.08995 * 109.47177 * 59.99655 * 16 14 13 30 30 H 1.09000 * 109.47132 * 299.99947 * 16 14 13 31 31 H 1.07997 * 124.44647 * 44.48676 * 19 17 16 32 32 H 1.07996 * 124.44406 * 179.97438 * 20 19 17 33 33 H 1.08998 * 110.38609 * 257.61953 * 21 20 19 34 34 H 1.09001 * 110.48258 * 135.29661 * 21 20 19 35 35 H 1.09002 * 111.03445 * 261.47501 * 22 17 16 36 36 H 1.09000 * 111.03674 * 25.37340 * 22 17 16 37 37 H 1.09007 * 109.88016 * 120.70431 * 23 13 12 38 38 H 1.08998 * 109.88657 * 241.87113 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5741 -2.5550 -0.8521 11 6 0.4743 -2.6846 1.3309 12 6 0.3763 -4.2304 1.4185 13 7 1.6646 -4.7178 0.8931 14 6 2.2297 -5.9077 1.1787 15 8 3.2950 -6.2077 0.6826 16 6 1.5379 -6.8652 2.1143 17 6 2.3847 -8.1302 2.2673 18 1 3.3898 -7.8751 2.6033 19 6 2.4428 -8.8860 0.9602 20 6 2.2592 -10.1646 1.1480 21 6 2.0476 -10.4746 2.6117 22 6 1.7152 -9.1101 3.2586 23 6 2.2279 -3.6938 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 1.0362 -2.2772 2.1713 26 1 -0.5165 -2.2342 1.2710 27 1 -0.4466 -4.5960 0.8042 28 1 0.2460 -4.5438 2.4543 29 1 0.5613 -7.1282 1.7082 30 1 1.4111 -6.3933 3.0887 31 1 2.6096 -8.4279 -0.0035 32 1 2.2579 -10.9037 0.3606 33 1 2.9567 -10.8892 3.0473 34 1 1.2163 -11.1680 2.7384 35 1 2.1600 -9.0283 4.2503 36 1 0.6380 -8.9489 3.3007 37 1 3.2025 -3.3754 0.3711 38 1 2.3248 -4.0939 -1.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701337479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:15 Heat of formation + Delta-G solvation = -47.456262 kcal Electronic energy + Delta-G solvation = -18051.109888 eV Core-core repulsion = 15278.342021 eV Total energy + Delta-G solvation = -2772.767867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13401 -39.46964 -38.13954 -34.97147 -32.89758 -31.69403 -30.05458 -29.74223 -27.39658 -25.81030 -23.72088 -21.68948 -21.26735 -20.28966 -19.43826 -18.64716 -17.90338 -17.07648 -16.76758 -16.50220 -16.14734 -15.79617 -15.14451 -14.45487 -14.27822 -13.88542 -13.60560 -13.09158 -13.02631 -12.94558 -12.82785 -12.74429 -12.68686 -12.62957 -12.30384 -12.05487 -11.98539 -11.71385 -11.56224 -11.36903 -10.98217 -10.71839 -10.52132 -9.77110 -9.54815 -8.17549 -6.26693 1.40669 1.41521 1.43204 1.52810 1.70208 2.14671 2.43393 3.14406 3.54686 3.75890 3.90216 4.00929 4.07621 4.30739 4.36221 4.45575 4.47315 4.54852 4.60048 4.68598 4.71722 4.79691 4.80794 5.00381 5.02314 5.10707 5.13765 5.27655 5.31969 5.37579 5.45291 5.56941 5.71128 5.76412 5.85954 6.01230 6.27234 6.70511 6.79396 7.23302 7.40799 8.91838 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057881 B = 0.004162 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.638757 B = 6725.257339 C = 6917.812772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.018 0.982 11 C -0.103 4.103 12 C 0.103 3.897 13 N -0.618 5.618 14 C 0.513 3.487 15 O -0.592 6.592 16 C -0.117 4.117 17 C -0.055 4.055 18 H 0.067 0.933 19 C -0.171 4.171 20 C -0.171 4.171 21 C -0.098 4.098 22 C -0.114 4.114 23 C 0.121 3.879 24 H 0.264 0.736 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -16.688 7.973 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.018 3.982 10 H 0.036 0.964 11 C -0.141 4.141 12 C -0.019 4.019 13 N -0.351 5.351 14 C 0.304 3.696 15 O -0.473 6.473 16 C -0.156 4.156 17 C -0.073 4.073 18 H 0.085 0.915 19 C -0.189 4.189 20 C -0.189 4.189 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.002 4.002 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.502 -16.797 7.748 18.558 hybrid contribution 0.692 1.431 -0.741 1.754 sum -0.811 -15.366 7.007 16.907 Atomic orbital electron populations 1.70025 1.06899 1.27581 1.50446 1.25630 0.95718 1.02034 0.94382 0.85626 0.78711 0.79517 0.78228 1.20262 1.20406 1.19727 1.21320 0.92754 0.91559 1.51906 0.93332 1.19638 0.92907 0.90970 0.94664 0.96399 1.22583 1.00722 0.92575 0.98254 1.22600 0.84361 0.94832 1.00077 1.48875 1.23116 1.16414 1.46658 1.21257 0.85019 0.81038 0.82295 1.90631 1.24499 1.76577 1.55617 1.21741 1.00328 0.93929 0.99588 1.20839 0.98787 0.93628 0.94091 0.91478 1.23261 1.01260 0.96256 0.98110 1.23528 1.00462 0.96217 0.98710 1.21386 1.02419 0.97952 0.91704 1.22569 1.01567 0.93009 0.97966 1.21942 0.97591 0.88675 0.91996 0.92686 0.93436 0.91274 0.90530 0.88076 0.87111 0.86513 0.88715 0.85157 0.90229 0.89429 0.89390 0.89350 0.94195 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.41 12.50 21.45 0.27 -50.14 16 2 C 0.02 1.21 5.36 84.65 0.45 1.67 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.54 -29.36 8.47 25.60 0.22 -29.15 16 8 H 0.05 2.68 7.53 -2.91 -0.02 2.66 16 9 C 0.04 1.84 2.78 -10.35 -0.03 1.81 16 10 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 11 C -0.10 -4.36 5.96 32.07 0.19 -4.17 16 12 C 0.10 3.33 6.70 86.94 0.58 3.91 16 13 N -0.62 -23.35 3.32 -811.34 -2.70 -26.05 16 14 C 0.51 18.23 7.61 87.65 0.67 18.89 16 15 O -0.59 -25.59 15.01 -3.02 -0.05 -25.63 16 16 C -0.12 -2.78 4.12 29.85 0.12 -2.65 16 17 C -0.05 -1.29 2.54 -10.86 -0.03 -1.31 16 18 H 0.07 1.84 8.01 -2.39 -0.02 1.82 16 19 C -0.17 -4.48 9.19 26.26 0.24 -4.23 16 20 C -0.17 -3.50 10.78 26.26 0.28 -3.22 16 21 C -0.10 -1.50 6.81 30.52 0.21 -1.29 16 22 C -0.11 -1.77 6.71 31.70 0.21 -1.55 16 23 C 0.12 5.48 6.45 86.73 0.56 6.04 16 24 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 25 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 26 H 0.07 3.09 7.77 -2.39 -0.02 3.07 16 27 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.10 2.49 7.48 -2.39 -0.02 2.47 16 29 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.12 2.21 7.85 -2.39 -0.02 2.20 16 31 H 0.09 3.03 7.31 -2.91 -0.02 3.01 16 32 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.13 7.91 -2.39 -0.02 1.11 16 37 H 0.04 1.94 7.63 -2.38 -0.02 1.92 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.72 308.06 4.25 -60.47 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.02 Total: 11.71 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 3.68 Total: -15.26 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.43 Total: -76.19 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.72 4.25 -60.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701337479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.014 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds