Wall clock time and date at job start Mon Mar 30 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48498 * 109.47021 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47192 * 119.99652 * 3 2 1 6 6 H 1.48493 * 109.47175 * 239.99662 * 3 2 1 7 7 C 1.38951 * 119.99915 * 179.72156 * 2 1 3 8 8 H 1.07997 * 119.99765 * 210.21433 * 7 2 1 9 9 N 1.37104 * 119.99893 * 30.21269 * 7 2 1 10 10 C 1.34780 * 119.99641 * 208.08420 * 9 7 2 11 11 O 1.21287 * 120.00204 * 353.67127 * 10 9 7 12 12 C 1.50699 * 119.99589 * 173.66330 * 10 9 7 13 13 C 1.52301 * 115.91231 * 92.68612 * 12 10 9 14 14 C 1.51363 * 60.09959 * 106.19359 * 13 12 10 15 15 H 1.09007 * 115.84887 * 251.99172 * 14 13 12 16 16 C 1.52537 * 117.53488 * 111.34742 * 14 13 12 17 17 C 1.52873 * 110.48295 * 270.70852 * 16 14 13 18 18 C 1.53300 * 108.58334 * 53.45814 * 17 16 14 19 19 C 1.52080 * 114.63927 * 306.44110 * 12 10 9 20 20 C 1.46497 * 119.99902 * 28.09149 * 9 7 2 21 21 C 1.53009 * 117.49805 * 119.53920 * 20 9 7 22 22 C 1.53001 * 117.49807 * 50.91635 * 20 9 7 23 23 H 0.96998 * 120.00095 * 182.57782 * 1 2 3 24 24 H 1.09010 * 117.53839 * 213.90162 * 13 12 10 25 25 H 1.08991 * 117.54041 * 359.14898 * 13 12 10 26 26 H 1.09000 * 110.05022 * 149.84326 * 16 14 13 27 27 H 1.09007 * 108.21898 * 30.40670 * 16 14 13 28 28 H 1.09000 * 109.61736 * 293.72545 * 17 16 14 29 29 H 1.09005 * 109.61807 * 173.18848 * 17 16 14 30 30 H 1.08997 * 109.61754 * 165.82637 * 18 17 16 31 31 H 1.09003 * 109.61771 * 45.28359 * 18 17 16 32 32 H 1.09004 * 109.26803 * 314.64102 * 19 12 10 33 33 H 1.09000 * 109.26550 * 74.10056 * 19 12 10 34 34 H 1.08991 * 115.55083 * 265.24444 * 20 9 7 35 35 H 1.09001 * 117.49525 * 359.97438 * 21 20 9 36 36 H 1.08989 * 117.49861 * 145.01929 * 21 20 9 37 37 H 1.09001 * 117.49648 * 214.97312 * 22 20 9 38 38 H 1.08996 * 117.50086 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2832 2.7464 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1019 1.6963 -1.2124 7 6 2.0089 -1.2033 0.0058 8 1 2.9788 -1.2646 0.4768 9 7 1.4630 -2.3129 -0.5863 10 6 1.7865 -3.5429 -0.1400 11 8 2.6452 -3.6744 0.7065 12 6 1.0811 -4.7545 -0.6925 13 6 1.7541 -5.4333 -1.8783 14 6 1.7997 -6.0824 -0.5116 15 1 2.7662 -6.0623 -0.0079 16 6 1.0105 -7.3732 -0.3174 17 6 -0.4173 -7.0645 0.1334 18 6 -1.0406 -6.0772 -0.8601 19 6 -0.4366 -4.6942 -0.6165 20 6 0.5283 -2.1616 -1.7041 21 6 0.9191 -2.7924 -3.0422 22 6 0.9611 -1.2724 -2.8715 23 1 -0.4850 -0.8392 0.0378 24 1 1.1099 -5.8858 -2.6322 25 1 2.6797 -4.9950 -2.2511 26 1 1.4975 -8.0002 0.4295 27 1 0.9822 -7.9020 -1.2701 28 1 -0.3989 -6.6200 1.1284 29 1 -1.0023 -7.9841 0.1513 30 1 -2.1192 -6.0374 -0.7085 31 1 -0.8231 -6.3971 -1.8792 32 1 -0.7335 -4.3408 0.3710 33 1 -0.8073 -4.0016 -1.3722 34 1 -0.5283 -2.1621 -1.4367 35 1 1.8720 -3.3195 -3.0908 36 1 0.1196 -3.2081 -3.6552 37 1 0.1891 -0.6883 -3.3724 38 1 1.9411 -0.7997 -2.8077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706784824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:36 Heat of formation + Delta-G solvation = 10.726075 kcal Electronic energy + Delta-G solvation = -19500.940645 eV Core-core repulsion = 16730.695754 eV Total energy + Delta-G solvation = -2770.244892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21698 -37.82007 -36.11806 -33.34022 -32.68396 -31.15941 -30.33139 -25.35715 -24.34986 -23.00425 -21.96507 -21.53191 -20.62842 -19.42350 -17.82669 -17.40913 -16.50518 -15.03677 -14.72586 -14.57933 -13.99387 -13.79290 -13.69912 -13.52632 -13.22540 -12.74457 -12.39254 -12.06837 -11.74848 -11.49885 -11.10510 -11.02879 -10.83916 -10.72290 -10.56080 -10.23350 -10.18155 -10.10548 -9.98025 -9.55951 -9.52773 -9.13885 -8.79095 -8.24142 -7.74240 -6.63218 -3.82244 3.31539 3.37180 3.56492 3.71184 4.14296 4.30552 4.47272 4.63907 4.89674 5.01308 5.06937 5.14423 5.35283 5.37790 5.46139 5.56764 5.63209 5.65315 5.75025 5.83924 5.87156 5.93592 6.02803 6.09224 6.15256 6.18930 6.29875 6.40135 6.43562 6.48173 6.53142 6.62145 6.70109 6.73731 6.87243 7.99389 8.17699 8.71799 8.99479 9.50521 9.97498 10.67847 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.007605 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.754976 B = 3680.932870 C = 3855.861446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.020 3.980 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.413 4.413 8 H 0.087 0.913 9 N -0.422 5.422 10 C 0.486 3.514 11 O -0.579 6.579 12 C -0.115 4.115 13 C -0.161 4.161 14 C -0.127 4.127 15 H 0.105 0.895 16 C -0.084 4.084 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.079 4.079 20 C 0.089 3.911 21 C -0.195 4.195 22 C -0.161 4.161 23 H 0.273 0.727 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -9.496 -6.368 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.189 4.189 3 Si 0.894 3.106 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.104 0.896 9 N -0.141 5.141 10 C 0.274 3.726 11 O -0.463 6.463 12 C -0.119 4.119 13 C -0.198 4.198 14 C -0.146 4.146 15 H 0.123 0.877 16 C -0.121 4.121 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.117 4.117 20 C -0.017 4.017 21 C -0.233 4.233 22 C -0.198 4.198 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.756 -7.865 -5.964 10.248 hybrid contribution 0.147 -1.532 -0.007 1.539 sum -2.609 -9.397 -5.971 11.435 Atomic orbital electron populations 1.70758 1.07208 1.30866 1.40862 1.26196 0.95865 1.02080 0.94748 0.83523 0.75205 0.74750 0.77154 1.20545 1.21044 1.21107 1.20201 1.04939 0.88246 1.40557 0.89557 1.43017 1.40002 1.04846 1.26191 1.19241 0.86031 0.83370 0.83914 1.90500 1.34767 1.85535 1.35474 1.20911 0.94885 0.93063 1.03016 1.22751 1.02028 1.03799 0.91269 1.21756 1.01117 0.92110 0.99595 0.87733 1.20983 0.95059 0.95226 1.00858 1.21566 0.95685 0.98728 0.99710 1.21599 0.99279 0.95354 0.99285 1.20858 0.91289 0.96969 1.02539 1.21387 0.93707 1.04105 0.82479 1.23410 1.02938 0.96491 1.00434 1.22974 1.03295 0.92223 1.01328 0.91600 0.88825 0.89314 0.91762 0.92101 0.91619 0.92295 0.91960 0.92000 0.91630 0.90733 0.88229 0.88920 0.89276 0.89235 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.82 12.99 55.50 0.72 -23.09 16 2 C 0.02 0.54 4.42 -17.47 -0.08 0.47 16 3 Si 1.07 24.07 30.01 -169.99 -5.10 18.97 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.41 -11.71 8.70 -14.93 -0.13 -11.84 16 8 H 0.09 2.65 7.59 -52.49 -0.40 2.25 16 9 N -0.42 -10.72 2.74 -107.73 -0.30 -11.01 16 10 C 0.49 12.18 6.75 -10.98 -0.07 12.11 16 11 O -0.58 -16.86 16.01 5.55 0.09 -16.77 16 12 C -0.12 -2.19 1.39 -156.96 -0.22 -2.41 16 13 C -0.16 -2.60 7.06 -27.91 -0.20 -2.80 16 14 C -0.13 -2.16 5.48 -92.16 -0.50 -2.67 16 15 H 0.10 2.01 7.66 -51.92 -0.40 1.61 16 16 C -0.08 -1.12 5.87 -27.03 -0.16 -1.27 16 17 C -0.12 -1.54 5.94 -26.64 -0.16 -1.69 16 18 C -0.12 -1.54 5.70 -26.64 -0.15 -1.70 16 19 C -0.08 -1.33 4.85 -27.27 -0.13 -1.46 16 20 C 0.09 1.89 2.06 -67.93 -0.14 1.75 16 21 C -0.19 -3.38 8.24 -26.72 -0.22 -3.60 16 22 C -0.16 -3.16 9.51 -26.73 -0.25 -3.42 16 23 H 0.27 7.56 6.66 -40.82 -0.27 7.29 16 24 H 0.09 1.28 7.28 -51.92 -0.38 0.90 16 25 H 0.09 1.51 7.42 -51.93 -0.39 1.13 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 28 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.75 7.12 -51.93 -0.37 0.38 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.23 5.28 -51.93 -0.27 0.96 16 34 H 0.10 2.14 6.14 -51.93 -0.32 1.82 16 35 H 0.09 1.65 6.21 -51.93 -0.32 1.33 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.10 2.09 8.07 -51.93 -0.42 1.67 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -31.34 293.42 -8.29 -39.63 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.70 Total: 6.40 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.42 Total: -18.54 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.43 Total: -34.11 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.09 Total: -16.77 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.10 Total: 18.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.34 -8.29 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706784824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.357 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds