Wall clock time and date at job start Mon Mar 30 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48498 * 109.47021 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47192 * 119.99652 * 3 2 1 6 6 H 1.48493 * 109.47175 * 239.99662 * 3 2 1 7 7 C 1.38951 * 119.99915 * 179.72156 * 2 1 3 8 8 H 1.07997 * 119.99765 * 210.21433 * 7 2 1 9 9 N 1.37104 * 119.99893 * 30.21269 * 7 2 1 10 10 C 1.34780 * 119.99641 * 208.08420 * 9 7 2 11 11 O 1.21287 * 120.00204 * 353.67127 * 10 9 7 12 12 C 1.50699 * 119.99589 * 173.66330 * 10 9 7 13 13 C 1.52301 * 115.91231 * 92.68612 * 12 10 9 14 14 C 1.51363 * 60.09959 * 106.19359 * 13 12 10 15 15 H 1.09007 * 115.84887 * 251.99172 * 14 13 12 16 16 C 1.52537 * 117.53488 * 111.34742 * 14 13 12 17 17 C 1.52873 * 110.48295 * 270.70852 * 16 14 13 18 18 C 1.53300 * 108.58334 * 53.45814 * 17 16 14 19 19 C 1.52080 * 114.63927 * 306.44110 * 12 10 9 20 20 C 1.46497 * 119.99902 * 28.09149 * 9 7 2 21 21 C 1.53009 * 117.49805 * 119.53920 * 20 9 7 22 22 C 1.53001 * 117.49807 * 50.91635 * 20 9 7 23 23 H 0.96998 * 120.00095 * 182.57782 * 1 2 3 24 24 H 1.09010 * 117.53839 * 213.90162 * 13 12 10 25 25 H 1.08991 * 117.54041 * 359.14898 * 13 12 10 26 26 H 1.09000 * 110.05022 * 149.84326 * 16 14 13 27 27 H 1.09007 * 108.21898 * 30.40670 * 16 14 13 28 28 H 1.09000 * 109.61736 * 293.72545 * 17 16 14 29 29 H 1.09005 * 109.61807 * 173.18848 * 17 16 14 30 30 H 1.08997 * 109.61754 * 165.82637 * 18 17 16 31 31 H 1.09003 * 109.61771 * 45.28359 * 18 17 16 32 32 H 1.09004 * 109.26803 * 314.64102 * 19 12 10 33 33 H 1.09000 * 109.26550 * 74.10056 * 19 12 10 34 34 H 1.08991 * 115.55083 * 265.24444 * 20 9 7 35 35 H 1.09001 * 117.49525 * 359.97438 * 21 20 9 36 36 H 1.08989 * 117.49861 * 145.01929 * 21 20 9 37 37 H 1.09001 * 117.49648 * 214.97312 * 22 20 9 38 38 H 1.08996 * 117.50086 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2832 2.7464 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1019 1.6963 -1.2124 7 6 2.0089 -1.2033 0.0058 8 1 2.9788 -1.2646 0.4768 9 7 1.4630 -2.3129 -0.5863 10 6 1.7865 -3.5429 -0.1400 11 8 2.6452 -3.6744 0.7065 12 6 1.0811 -4.7545 -0.6925 13 6 1.7541 -5.4333 -1.8783 14 6 1.7997 -6.0824 -0.5116 15 1 2.7662 -6.0623 -0.0079 16 6 1.0105 -7.3732 -0.3174 17 6 -0.4173 -7.0645 0.1334 18 6 -1.0406 -6.0772 -0.8601 19 6 -0.4366 -4.6942 -0.6165 20 6 0.5283 -2.1616 -1.7041 21 6 0.9191 -2.7924 -3.0422 22 6 0.9611 -1.2724 -2.8715 23 1 -0.4850 -0.8392 0.0378 24 1 1.1099 -5.8858 -2.6322 25 1 2.6797 -4.9950 -2.2511 26 1 1.4975 -8.0002 0.4295 27 1 0.9822 -7.9020 -1.2701 28 1 -0.3989 -6.6200 1.1284 29 1 -1.0023 -7.9841 0.1513 30 1 -2.1192 -6.0374 -0.7085 31 1 -0.8231 -6.3971 -1.8792 32 1 -0.7335 -4.3408 0.3710 33 1 -0.8073 -4.0016 -1.3722 34 1 -0.5283 -2.1621 -1.4367 35 1 1.8720 -3.3195 -3.0908 36 1 0.1196 -3.2081 -3.6552 37 1 0.1891 -0.6883 -3.3724 38 1 1.9411 -0.7997 -2.8077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706784824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:36 Heat of formation + Delta-G solvation = -7.832915 kcal Electronic energy + Delta-G solvation = -19501.745423 eV Core-core repulsion = 16730.695754 eV Total energy + Delta-G solvation = -2771.049670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77272 -39.41712 -37.98000 -35.19363 -33.99034 -33.02424 -31.70233 -27.21719 -25.67550 -24.63321 -23.41983 -23.10400 -22.00671 -21.02034 -19.46290 -19.13968 -18.11835 -16.73618 -16.62000 -16.15637 -15.60400 -15.31365 -15.11189 -14.83103 -14.61033 -14.19737 -14.06839 -13.59101 -13.38458 -12.92777 -12.83767 -12.59302 -12.31223 -12.03957 -11.97781 -11.88671 -11.73545 -11.66344 -11.35780 -11.20837 -10.88323 -10.71551 -10.49137 -10.17428 -9.78774 -8.82222 -6.02560 1.46609 1.49934 1.77370 1.89956 2.34873 2.72980 2.83221 2.90322 3.17006 3.60502 3.73982 3.84310 3.96457 4.00393 4.10694 4.20138 4.28646 4.35153 4.39767 4.58544 4.64415 4.71043 4.73978 4.80202 4.91562 5.00031 5.02891 5.15299 5.18677 5.24140 5.29304 5.31592 5.34689 5.42978 5.51721 5.81170 5.95123 6.66831 6.93022 7.45412 7.96505 8.48146 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.007605 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.754976 B = 3680.932870 C = 3855.861446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C -0.003 4.003 3 Si 1.110 2.890 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.445 4.445 8 H 0.045 0.955 9 N -0.431 5.431 10 C 0.467 3.533 11 O -0.640 6.640 12 C -0.131 4.131 13 C -0.133 4.133 14 C -0.130 4.130 15 H 0.069 0.931 16 C -0.078 4.078 17 C -0.120 4.120 18 C -0.109 4.109 19 C -0.073 4.073 20 C 0.062 3.938 21 C -0.151 4.151 22 C -0.168 4.168 23 H 0.264 0.736 24 H 0.138 0.862 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -11.062 -9.139 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.209 4.209 3 Si 0.930 3.070 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.063 0.937 9 N -0.149 5.149 10 C 0.258 3.742 11 O -0.528 6.528 12 C -0.134 4.134 13 C -0.170 4.170 14 C -0.149 4.149 15 H 0.087 0.913 16 C -0.115 4.115 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.111 4.111 20 C -0.042 4.042 21 C -0.189 4.189 22 C -0.206 4.206 23 H 0.074 0.926 24 H 0.156 0.844 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.546 -9.440 -8.767 13.661 hybrid contribution 0.743 -1.033 0.932 1.577 sum -3.803 -10.473 -7.834 13.621 Atomic orbital electron populations 1.70858 1.07434 1.30281 1.41538 1.27410 0.95943 1.04368 0.93213 0.83003 0.74584 0.71484 0.77884 1.19346 1.20884 1.19236 1.20089 1.04035 0.90479 1.42539 0.93669 1.43197 1.40137 1.04287 1.27289 1.20448 0.85307 0.85209 0.83233 1.90439 1.37486 1.86766 1.38147 1.20759 0.95796 0.90979 1.05866 1.22863 1.01395 1.01561 0.91183 1.21872 0.99977 0.93063 0.99993 0.91282 1.21034 0.94672 0.93010 1.02828 1.21591 0.95827 1.00004 0.98270 1.21605 1.00015 0.92345 1.00626 1.20830 0.89612 0.99904 1.00742 1.21462 0.92577 1.07763 0.82440 1.23494 1.03908 0.94619 0.96864 1.23015 1.02608 0.94168 1.00774 0.92576 0.84446 0.90691 0.91230 0.88879 0.94302 0.88933 0.90083 0.89394 0.95141 0.90363 0.88545 0.89261 0.84716 0.87221 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.66 12.99 21.66 0.28 -48.38 16 2 C 0.00 -0.19 4.42 84.93 0.38 0.19 16 3 Si 1.11 49.26 30.01 68.60 2.06 51.32 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.44 -26.66 8.70 84.04 0.73 -25.93 16 8 H 0.05 3.02 7.59 -2.91 -0.02 2.99 16 9 N -0.43 -22.91 2.74 -613.13 -1.68 -24.59 16 10 C 0.47 24.70 6.75 87.66 0.59 25.29 16 11 O -0.64 -40.26 16.01 -3.05 -0.05 -40.30 16 12 C -0.13 -4.95 1.39 -53.77 -0.07 -5.03 16 13 C -0.13 -3.96 7.06 29.83 0.21 -3.75 16 14 C -0.13 -4.34 5.48 -11.79 -0.06 -4.40 16 15 H 0.07 2.78 7.66 -2.38 -0.02 2.76 16 16 C -0.08 -1.84 5.87 30.40 0.18 -1.66 16 17 C -0.12 -2.68 5.94 30.65 0.18 -2.50 16 18 C -0.11 -2.41 5.70 30.65 0.17 -2.23 16 19 C -0.07 -2.38 4.85 30.25 0.15 -2.23 16 20 C 0.06 2.63 2.06 45.00 0.09 2.72 16 21 C -0.15 -4.83 8.24 30.60 0.25 -4.58 16 22 C -0.17 -6.43 9.51 30.60 0.29 -6.14 16 23 H 0.26 15.02 6.66 -92.71 -0.62 14.41 16 24 H 0.14 2.92 7.28 -2.38 -0.02 2.90 16 25 H 0.07 2.46 7.42 -2.39 -0.02 2.44 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 1.65 8.05 -2.38 -0.02 1.63 16 28 H 0.04 1.07 8.04 -2.39 -0.02 1.05 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.55 7.12 -2.39 -0.02 1.54 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 2.43 5.28 -2.39 -0.01 2.42 16 34 H 0.10 4.13 6.14 -2.39 -0.01 4.11 16 35 H 0.09 2.96 6.21 -2.39 -0.01 2.94 16 36 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.07 3.18 8.07 -2.39 -0.02 3.16 16 Total: -1.00 -75.01 293.42 4.89 -70.12 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.19 Total: 22.08 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.09 Total: -30.25 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.40 Total: -72.97 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.05 Total: -40.30 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.06 Total: 51.32 kcal Total: -75.01 4.89 -70.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706784824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.286 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds