Wall clock time and date at job start Mon Mar 30 2020 07:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48503 * 109.46998 * 239.99519 * 3 2 1 5 5 H 1.48495 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47292 * 119.99862 * 3 2 1 7 7 C 1.38947 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00057 * 163.68402 * 7 2 1 9 9 N 1.37105 * 120.00120 * 343.69430 * 7 2 1 10 10 C 1.34768 * 120.00211 * 118.18009 * 9 7 2 11 11 O 1.21298 * 119.99808 * 177.18559 * 10 9 7 12 12 C 1.50703 * 120.00253 * 356.90202 * 10 9 7 13 13 C 1.52296 * 115.91626 * 285.27691 * 12 10 9 14 14 C 1.51366 * 60.10056 * 253.80611 * 13 12 10 15 15 H 1.09002 * 115.84978 * 108.01226 * 14 13 12 16 16 C 1.52544 * 117.53029 * 248.65383 * 14 13 12 17 17 C 1.52882 * 110.48047 * 89.28818 * 16 14 13 18 18 C 1.53300 * 108.57906 * 306.54094 * 17 16 14 19 19 C 1.52072 * 114.63206 * 71.51697 * 12 10 9 20 20 C 1.46507 * 119.99457 * 298.17823 * 9 7 2 21 21 C 1.53001 * 117.50178 * 3.58927 * 20 9 7 22 22 C 1.52998 * 117.49650 * 294.92571 * 20 9 7 23 23 H 0.97003 * 119.99359 * 5.05344 * 1 2 3 24 24 H 1.09003 * 117.53863 * 0.84133 * 13 12 10 25 25 H 1.08999 * 117.53987 * 146.09396 * 13 12 10 26 26 H 1.09007 * 108.32834 * 329.52189 * 16 14 13 27 27 H 1.08996 * 109.93323 * 210.07616 * 16 14 13 28 28 H 1.08998 * 109.61719 * 186.81183 * 17 16 14 29 29 H 1.08993 * 109.61588 * 66.26848 * 17 16 14 30 30 H 1.09001 * 109.62214 * 314.71055 * 18 17 16 31 31 H 1.09003 * 109.61079 * 194.17292 * 18 17 16 32 32 H 1.09000 * 109.27093 * 285.89801 * 19 12 10 33 33 H 1.09004 * 109.27312 * 45.40197 * 19 12 10 34 34 H 1.09002 * 115.54381 * 149.25699 * 20 9 7 35 35 H 1.08998 * 117.49243 * 359.97438 * 21 20 9 36 36 H 1.08991 * 117.50017 * 145.01836 * 21 20 9 37 37 H 1.09000 * 117.49719 * 214.97683 * 22 20 9 38 38 H 1.08998 * 117.50107 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0562 -1.2223 -0.2622 9 7 1.3647 -2.3667 0.3344 10 6 1.2656 -3.3645 -0.5660 11 8 0.7408 -4.4127 -0.2544 12 6 1.8011 -3.1756 -1.9620 13 6 0.9681 -2.2914 -2.8805 14 6 0.9750 -3.7919 -3.0801 15 1 0.0609 -4.3133 -2.7963 16 6 1.6490 -4.3328 -4.3371 17 6 3.1330 -4.5939 -4.0783 18 6 3.7629 -3.3149 -3.5147 19 6 3.3184 -3.1523 -2.0611 20 6 0.7840 -2.5250 1.6702 21 6 0.8557 -1.3263 2.6183 22 6 1.7455 -2.5482 2.8601 23 1 -0.4849 0.8369 -0.0740 24 1 0.0611 -1.8494 -2.4681 25 1 1.4996 -1.6812 -3.6108 26 1 1.5455 -3.5901 -5.1283 27 1 1.1677 -5.2603 -4.6471 28 1 3.6255 -4.8636 -5.0125 29 1 3.2416 -5.4039 -3.3571 30 1 3.4305 -2.4558 -4.0973 31 1 4.8493 -3.3921 -3.5588 32 1 3.6895 -2.2027 -1.6756 33 1 3.7304 -3.9676 -1.4663 34 1 -0.1012 -3.1585 1.7258 35 1 1.3352 -0.4201 2.2483 36 1 0.0178 -1.1714 3.2980 37 1 1.4925 -3.1967 3.6989 38 1 2.8099 -2.4453 2.6492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706784835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:41 Heat of formation + Delta-G solvation = 7.123412 kcal Electronic energy + Delta-G solvation = -19402.575328 eV Core-core repulsion = 16632.174213 eV Total energy + Delta-G solvation = -2770.401115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80505 -37.71233 -35.76881 -33.19817 -32.49729 -31.24804 -30.14839 -25.02149 -24.40410 -23.31543 -21.34600 -20.85304 -20.47108 -19.29493 -17.88007 -16.87226 -15.92256 -15.21988 -14.76147 -14.23926 -13.93109 -13.63394 -13.34645 -13.31177 -13.00534 -12.54601 -12.07471 -11.95408 -11.57046 -11.37685 -11.22785 -11.11820 -10.81620 -10.48911 -10.43487 -10.37240 -10.29754 -10.00432 -9.67608 -9.30954 -9.26993 -8.83978 -8.79739 -8.28465 -7.05884 -6.30652 -4.24470 3.11873 3.19357 3.21170 3.90985 4.09187 4.39038 4.77065 4.85413 5.15116 5.22283 5.26709 5.35090 5.62590 5.71336 5.85469 5.87681 5.98007 5.98982 6.07614 6.09178 6.14916 6.17797 6.36601 6.43017 6.47239 6.49476 6.60022 6.65706 6.74915 6.81905 6.85781 6.96797 7.02175 7.09163 7.27746 7.51093 8.23377 8.39681 9.12461 9.55458 10.03624 10.71038 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.009605 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.515882 B = 2914.330953 C = 3544.789695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.349 4.349 8 H 0.080 0.920 9 N -0.412 5.412 10 C 0.526 3.474 11 O -0.602 6.602 12 C -0.093 4.093 13 C -0.137 4.137 14 C -0.143 4.143 15 H 0.096 0.904 16 C -0.082 4.082 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.073 4.073 20 C 0.106 3.894 21 C -0.158 4.158 22 C -0.212 4.212 23 H 0.268 0.732 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -1.718 -4.695 6.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.477 4.477 8 H 0.097 0.903 9 N -0.129 5.129 10 C 0.315 3.685 11 O -0.487 6.487 12 C -0.096 4.096 13 C -0.174 4.174 14 C -0.162 4.162 15 H 0.115 0.885 16 C -0.120 4.120 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.111 4.111 20 C 0.001 3.999 21 C -0.196 4.196 22 C -0.251 4.251 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.170 -2.075 -4.456 6.446 hybrid contribution 0.299 1.156 0.139 1.202 sum 4.468 -0.919 -4.317 6.281 Atomic orbital electron populations 1.69930 1.06170 1.27733 1.43942 1.25557 0.94945 0.99432 0.94059 0.86514 0.79792 0.82144 0.79332 1.19588 1.20915 1.19630 1.19006 0.94219 0.83628 1.50887 0.90287 1.42588 1.49528 1.13655 1.07160 1.19836 0.79565 0.83907 0.85198 1.90510 1.48754 1.29074 1.80331 1.20367 0.93875 1.05246 0.90075 1.22572 1.02089 0.91807 1.00959 1.21821 1.01099 0.96833 0.96419 0.88537 1.20961 0.95106 1.00130 0.95782 1.21557 0.95591 0.98214 1.00183 1.21605 0.99311 0.97854 0.96826 1.20736 0.92002 1.02513 0.95798 1.21316 0.96634 1.00272 0.81650 1.22989 1.00816 0.94153 1.01594 1.23289 0.98071 1.02591 1.01116 0.92145 0.88332 0.89523 0.92228 0.92130 0.92605 0.91796 0.91882 0.92295 0.90157 0.92467 0.88165 0.87592 0.90637 0.90400 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.66 12.89 55.50 0.72 -20.94 16 2 C 0.07 1.68 3.29 -17.47 -0.06 1.62 16 3 Si 0.90 18.89 29.42 -169.99 -5.00 13.89 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.35 -8.53 6.74 -14.93 -0.10 -8.63 16 8 H 0.08 1.90 6.02 -52.49 -0.32 1.59 16 9 N -0.41 -10.32 2.62 -107.72 -0.28 -10.61 16 10 C 0.53 13.25 6.69 -10.99 -0.07 13.18 16 11 O -0.60 -16.68 16.52 5.54 0.09 -16.59 16 12 C -0.09 -1.95 1.52 -156.97 -0.24 -2.19 16 13 C -0.14 -2.75 8.93 -27.92 -0.25 -3.00 16 14 C -0.14 -2.71 5.49 -92.16 -0.51 -3.21 16 15 H 0.10 1.99 8.00 -51.93 -0.42 1.58 16 16 C -0.08 -1.23 5.86 -27.03 -0.16 -1.39 16 17 C -0.12 -1.66 5.94 -26.64 -0.16 -1.81 16 18 C -0.12 -1.75 5.70 -26.64 -0.15 -1.90 16 19 C -0.07 -1.34 5.19 -27.27 -0.14 -1.48 16 20 C 0.11 2.55 5.79 -67.93 -0.39 2.16 16 21 C -0.16 -3.44 9.04 -26.69 -0.24 -3.68 16 22 C -0.21 -4.37 10.36 -26.69 -0.28 -4.64 16 23 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 24 H 0.10 2.26 8.14 -51.93 -0.42 1.83 16 25 H 0.09 1.57 7.28 -51.93 -0.38 1.20 16 26 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 30 H 0.06 0.92 7.12 -51.93 -0.37 0.55 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.53 6.05 -51.93 -0.31 1.21 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 2.50 7.82 -51.93 -0.41 2.09 16 35 H 0.11 2.47 5.59 -51.93 -0.29 2.18 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -27.80 300.74 -8.53 -36.33 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.84 Total: 8.36 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.75 Total: -14.97 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.43 Total: -31.55 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.09 Total: -16.59 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.00 Total: 13.89 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.80 -8.53 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706784835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.453 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds