Wall clock time and date at job start Mon Mar 30 2020 07:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48503 * 109.46998 * 239.99519 * 3 2 1 5 5 H 1.48495 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47292 * 119.99862 * 3 2 1 7 7 C 1.38947 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00057 * 163.68402 * 7 2 1 9 9 N 1.37105 * 120.00120 * 343.69430 * 7 2 1 10 10 C 1.34768 * 120.00211 * 118.18009 * 9 7 2 11 11 O 1.21298 * 119.99808 * 177.18559 * 10 9 7 12 12 C 1.50703 * 120.00253 * 356.90202 * 10 9 7 13 13 C 1.52296 * 115.91626 * 285.27691 * 12 10 9 14 14 C 1.51366 * 60.10056 * 253.80611 * 13 12 10 15 15 H 1.09002 * 115.84978 * 108.01226 * 14 13 12 16 16 C 1.52544 * 117.53029 * 248.65383 * 14 13 12 17 17 C 1.52882 * 110.48047 * 89.28818 * 16 14 13 18 18 C 1.53300 * 108.57906 * 306.54094 * 17 16 14 19 19 C 1.52072 * 114.63206 * 71.51697 * 12 10 9 20 20 C 1.46507 * 119.99457 * 298.17823 * 9 7 2 21 21 C 1.53001 * 117.50178 * 3.58927 * 20 9 7 22 22 C 1.52998 * 117.49650 * 294.92571 * 20 9 7 23 23 H 0.97003 * 119.99359 * 5.05344 * 1 2 3 24 24 H 1.09003 * 117.53863 * 0.84133 * 13 12 10 25 25 H 1.08999 * 117.53987 * 146.09396 * 13 12 10 26 26 H 1.09007 * 108.32834 * 329.52189 * 16 14 13 27 27 H 1.08996 * 109.93323 * 210.07616 * 16 14 13 28 28 H 1.08998 * 109.61719 * 186.81183 * 17 16 14 29 29 H 1.08993 * 109.61588 * 66.26848 * 17 16 14 30 30 H 1.09001 * 109.62214 * 314.71055 * 18 17 16 31 31 H 1.09003 * 109.61079 * 194.17292 * 18 17 16 32 32 H 1.09000 * 109.27093 * 285.89801 * 19 12 10 33 33 H 1.09004 * 109.27312 * 45.40197 * 19 12 10 34 34 H 1.09002 * 115.54381 * 149.25699 * 20 9 7 35 35 H 1.08998 * 117.49243 * 359.97438 * 21 20 9 36 36 H 1.08991 * 117.50017 * 145.01836 * 21 20 9 37 37 H 1.09000 * 117.49719 * 214.97683 * 22 20 9 38 38 H 1.08998 * 117.50107 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0562 -1.2223 -0.2622 9 7 1.3647 -2.3667 0.3344 10 6 1.2656 -3.3645 -0.5660 11 8 0.7408 -4.4127 -0.2544 12 6 1.8011 -3.1756 -1.9620 13 6 0.9681 -2.2914 -2.8805 14 6 0.9750 -3.7919 -3.0801 15 1 0.0609 -4.3133 -2.7963 16 6 1.6490 -4.3328 -4.3371 17 6 3.1330 -4.5939 -4.0783 18 6 3.7629 -3.3149 -3.5147 19 6 3.3184 -3.1523 -2.0611 20 6 0.7840 -2.5250 1.6702 21 6 0.8557 -1.3263 2.6183 22 6 1.7455 -2.5482 2.8601 23 1 -0.4849 0.8369 -0.0740 24 1 0.0611 -1.8494 -2.4681 25 1 1.4996 -1.6812 -3.6108 26 1 1.5455 -3.5901 -5.1283 27 1 1.1677 -5.2603 -4.6471 28 1 3.6255 -4.8636 -5.0125 29 1 3.2416 -5.4039 -3.3571 30 1 3.4305 -2.4558 -4.0973 31 1 4.8493 -3.3921 -3.5588 32 1 3.6895 -2.2027 -1.6756 33 1 3.7304 -3.9676 -1.4663 34 1 -0.1012 -3.1585 1.7258 35 1 1.3352 -0.4201 2.2483 36 1 0.0178 -1.1714 3.2980 37 1 1.4925 -3.1967 3.6989 38 1 2.8099 -2.4453 2.6492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706784835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:40 Heat of formation + Delta-G solvation = -6.903911 kcal Electronic energy + Delta-G solvation = -19403.183598 eV Core-core repulsion = 16632.174213 eV Total energy + Delta-G solvation = -2771.009385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46803 -39.42032 -37.65611 -35.03935 -33.90110 -33.12938 -31.53900 -26.95645 -25.86582 -24.84430 -23.07104 -22.40554 -22.06468 -21.09742 -19.43051 -18.59650 -17.74164 -17.10721 -16.46051 -15.92441 -15.50296 -15.10239 -15.03354 -14.71728 -14.54344 -14.08275 -13.80220 -13.64381 -13.11830 -13.05339 -12.80634 -12.74668 -12.52619 -12.12437 -12.09388 -11.75255 -11.64646 -11.49070 -11.34746 -11.11353 -10.76889 -10.68127 -10.35760 -10.17069 -8.99099 -8.19285 -6.19461 1.44231 1.48804 1.54544 2.00799 2.31773 2.72284 2.99017 3.13216 3.35555 3.83234 3.95242 4.02656 4.13261 4.16884 4.27940 4.34117 4.39927 4.45104 4.51395 4.69351 4.74375 4.81768 4.84342 4.97304 5.01532 5.09394 5.13688 5.24385 5.29470 5.36641 5.38678 5.42614 5.47377 5.50989 5.57778 5.63280 6.32134 6.47014 7.20855 7.61014 8.11990 8.83091 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.009605 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.515882 B = 2914.330953 C = 3544.789695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.355 4.355 8 H 0.083 0.917 9 N -0.416 5.416 10 C 0.503 3.497 11 O -0.643 6.643 12 C -0.107 4.107 13 C -0.132 4.132 14 C -0.130 4.130 15 H 0.068 0.932 16 C -0.079 4.079 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.068 4.068 20 C 0.065 3.935 21 C -0.147 4.147 22 C -0.182 4.182 23 H 0.268 0.732 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.659 -1.068 -5.915 8.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.167 4.167 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.482 4.482 8 H 0.101 0.899 9 N -0.133 5.133 10 C 0.294 3.706 11 O -0.531 6.531 12 C -0.110 4.110 13 C -0.170 4.170 14 C -0.149 4.149 15 H 0.087 0.913 16 C -0.116 4.116 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.106 4.106 20 C -0.040 4.040 21 C -0.185 4.185 22 C -0.221 4.221 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.213 -1.413 -5.669 8.528 hybrid contribution -0.416 0.921 0.596 1.173 sum 5.797 -0.492 -5.073 7.719 Atomic orbital electron populations 1.70053 1.07697 1.28402 1.44934 1.26167 0.95354 1.01999 0.93209 0.85576 0.78574 0.78130 0.79737 1.18506 1.21194 1.19101 1.19183 0.94297 0.83611 1.51132 0.89923 1.42811 1.48981 1.13842 1.07642 1.20709 0.79406 0.83522 0.86967 1.90454 1.50706 1.30515 1.81409 1.20460 0.95717 1.06754 0.88057 1.22449 1.00595 0.92808 1.01101 1.21916 0.99951 0.95701 0.97358 0.91338 1.21030 0.95679 1.01218 0.93669 1.21564 0.94807 0.97341 1.01492 1.21606 1.00915 0.98576 0.93822 1.20720 0.89705 1.01495 0.98667 1.21430 0.97735 1.02241 0.82637 1.22938 1.01534 0.93280 1.00731 1.23306 0.97340 1.01733 0.99690 0.92222 0.92136 0.87031 0.90088 0.90703 0.89038 0.93109 0.91112 0.89756 0.91195 0.93515 0.90399 0.88960 0.88920 0.87513 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.76 12.89 21.66 0.28 -45.48 16 2 C 0.04 1.91 3.29 84.93 0.28 2.19 16 3 Si 0.96 38.09 29.42 68.60 2.02 40.11 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.29 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.35 -17.45 6.74 84.04 0.57 -16.88 16 8 H 0.08 3.96 6.02 -2.91 -0.02 3.95 16 9 N -0.42 -21.50 2.62 -613.12 -1.61 -23.11 16 10 C 0.50 26.43 6.69 87.66 0.59 27.02 16 11 O -0.64 -37.52 16.52 -3.08 -0.05 -37.58 16 12 C -0.11 -4.56 1.52 -53.77 -0.08 -4.64 16 13 C -0.13 -5.34 8.93 29.83 0.27 -5.08 16 14 C -0.13 -4.95 5.49 -11.79 -0.06 -5.01 16 15 H 0.07 2.95 8.00 -2.39 -0.02 2.93 16 16 C -0.08 -2.14 5.86 30.40 0.18 -1.96 16 17 C -0.11 -2.82 5.94 30.66 0.18 -2.64 16 18 C -0.11 -2.94 5.70 30.65 0.17 -2.76 16 19 C -0.07 -2.44 5.19 30.25 0.16 -2.28 16 20 C 0.06 3.18 5.79 44.99 0.26 3.44 16 21 C -0.15 -6.37 9.04 30.62 0.28 -6.09 16 22 C -0.18 -7.37 10.36 30.62 0.32 -7.05 16 23 H 0.27 13.39 8.32 -92.71 -0.77 12.62 16 24 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.11 3.88 7.28 -2.39 -0.02 3.86 16 26 H 0.08 1.90 8.06 -2.38 -0.02 1.89 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.39 8.04 -2.39 -0.02 1.37 16 30 H 0.07 1.78 7.12 -2.39 -0.02 1.76 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.60 6.05 -2.39 -0.01 2.59 16 33 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 4.11 7.82 -2.39 -0.02 4.09 16 35 H 0.09 4.27 5.59 -2.39 -0.01 4.26 16 36 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -62.28 300.74 4.78 -57.50 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 1.04 Total: 30.31 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.10 Total: -21.76 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.33 Total: -68.59 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.05 Total: -37.58 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.02 Total: 40.11 kcal Total: -62.28 4.78 -57.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706784835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.599 kcal (2) G-P(sol) polarization free energy of solvation -62.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds