Wall clock time and date at job start Mon Mar 30 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00343 * 2 1 4 4 H 1.48497 * 109.47417 * 275.43183 * 3 2 1 5 5 H 1.48501 * 109.46701 * 35.42707 * 3 2 1 6 6 H 1.48495 * 109.47473 * 155.42639 * 3 2 1 7 7 C 1.38956 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99555 * 341.40852 * 7 2 1 9 9 N 1.37094 * 120.00107 * 161.40704 * 7 2 1 10 10 C 1.34774 * 120.00414 * 317.04406 * 9 7 2 11 11 O 1.21295 * 119.99848 * 354.94304 * 10 9 7 12 12 C 1.50696 * 120.00250 * 175.21215 * 10 9 7 13 13 C 1.55932 * 115.92123 * 304.55527 * 12 10 9 14 14 C 1.58478 * 103.90358 * 199.42641 * 13 12 10 15 15 C 1.55922 * 103.90716 * 0.02562 * 14 13 12 16 16 C 1.55916 * 104.50058 * 289.45089 * 15 14 13 17 17 C 1.54586 * 104.64575 * 71.08968 * 16 15 14 18 18 C 1.56951 * 116.22450 * 185.56993 * 12 10 9 19 19 C 1.46500 * 119.99868 * 137.04971 * 9 7 2 20 20 C 1.53006 * 117.49784 * 7.95815 * 19 9 7 21 21 C 1.52999 * 117.49740 * 299.33733 * 19 9 7 22 22 H 0.96998 * 119.99800 * 359.97438 * 1 2 3 23 23 H 1.08996 * 110.40416 * 318.76123 * 13 12 10 24 24 H 1.08998 * 110.40088 * 81.17865 * 13 12 10 25 25 H 1.09002 * 110.98562 * 241.33797 * 14 13 12 26 26 H 1.08996 * 110.62160 * 118.49125 * 14 13 12 27 27 H 1.09004 * 115.91865 * 160.56501 * 15 14 13 28 28 H 1.08999 * 110.40852 * 312.29784 * 16 15 14 29 29 H 1.09003 * 110.50320 * 189.92396 * 16 15 14 30 30 H 1.08999 * 110.40241 * 241.21212 * 17 16 15 31 31 H 1.08996 * 110.40356 * 118.78808 * 17 16 15 32 32 H 1.09005 * 112.02656 * 297.11807 * 18 12 10 33 33 H 1.09000 * 112.03317 * 63.64639 * 18 12 10 34 34 H 1.09002 * 115.55231 * 153.66878 * 19 9 7 35 35 H 1.08996 * 117.50221 * 0.02562 * 20 19 9 36 36 H 1.08999 * 117.49590 * 145.02331 * 20 19 9 37 37 H 1.09002 * 117.50028 * 214.97442 * 21 19 9 38 38 H 1.08996 * 117.50182 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3809 2.1127 -1.3937 5 1 1.5076 2.6168 0.8116 6 1 3.5983 1.4098 0.5822 7 6 2.0089 -1.2034 -0.0005 8 1 1.5111 -2.1143 0.2973 9 7 3.3262 -1.2341 -0.3791 10 6 3.7348 -0.5326 -1.4549 11 8 2.9236 0.0516 -2.1418 12 6 5.1989 -0.4791 -1.8078 13 6 6.1536 0.0229 -0.6818 14 6 7.4646 0.4566 -1.4594 15 6 7.1297 0.1603 -2.9531 16 6 7.1118 -1.3959 -3.0479 17 6 5.8329 -1.8190 -2.2896 18 6 5.5920 0.4702 -2.9943 19 6 4.2897 -2.0297 0.3857 20 6 3.7383 -2.9482 1.4782 21 6 4.4899 -1.6712 1.8596 22 1 -0.4850 0.8400 0.0004 23 1 5.7094 0.8678 -0.1556 24 1 6.3770 -0.7849 0.0150 25 1 8.3226 -0.1338 -1.1376 26 1 7.6611 1.5193 -1.3179 27 1 7.7451 0.6756 -3.6906 28 1 7.9952 -1.8162 -2.5672 29 1 7.0590 -1.7144 -4.0890 30 1 6.0876 -2.4471 -1.4359 31 1 5.1506 -2.3435 -2.9583 32 1 5.1372 0.1590 -3.9348 33 1 5.3798 1.5154 -2.7692 34 1 5.1607 -2.3757 -0.1709 35 1 2.6587 -2.9608 1.6276 36 1 4.2464 -3.8987 1.6403 37 1 5.4924 -1.7818 2.2728 38 1 3.9044 -0.8438 2.2603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710863914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:29 Heat of formation + Delta-G solvation = -9.750283 kcal Electronic energy + Delta-G solvation = -19806.092495 eV Core-core repulsion = 17034.959681 eV Total energy + Delta-G solvation = -2771.132813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83407 -39.69776 -38.02732 -34.94936 -33.44587 -31.16286 -30.85471 -28.63437 -26.93591 -23.88251 -23.31165 -22.92708 -21.91938 -20.53507 -20.18722 -18.63913 -17.74608 -17.29575 -16.50662 -16.23913 -15.86678 -15.47947 -15.26583 -14.90686 -14.60316 -14.01478 -13.53848 -13.39178 -13.24091 -12.86879 -12.67161 -12.57503 -12.26913 -12.20953 -12.04356 -11.92056 -11.79702 -11.72510 -11.54509 -11.34688 -10.98959 -10.90124 -10.79391 -10.32813 -9.36785 -8.49995 -6.21810 1.10663 1.23806 1.35866 1.83517 2.30960 2.61293 2.92295 3.22930 3.42673 3.53947 3.64624 3.99220 4.01819 4.17364 4.21774 4.28080 4.31789 4.41744 4.53996 4.60707 4.62627 4.68479 4.81720 4.87722 4.96273 5.05271 5.09697 5.14579 5.20042 5.26890 5.31045 5.39604 5.42896 5.45303 5.48992 5.66236 5.84393 6.73648 6.89249 7.32079 7.88405 8.60039 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.010872 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.359048 B = 2574.754182 C = 3081.621798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.044 3.956 3 Si 0.945 3.055 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.449 5.449 10 C 0.475 3.525 11 O -0.599 6.599 12 C -0.107 4.107 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.108 4.108 19 C 0.039 3.961 20 C -0.173 4.173 21 C -0.183 4.183 22 H 0.272 0.728 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.154 0.846 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.832 -3.477 -0.594 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.160 4.160 3 Si 0.774 3.226 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.178 1.178 7 C -0.461 4.461 8 H 0.089 0.911 9 N -0.168 5.168 10 C 0.267 3.733 11 O -0.484 6.484 12 C -0.110 4.110 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.109 4.109 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.146 4.146 19 C -0.064 4.064 20 C -0.211 4.211 21 C -0.222 4.222 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.171 0.829 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.247 -3.139 -0.899 20.509 hybrid contribution -1.324 1.060 0.061 1.698 sum 18.923 -2.079 -0.837 19.055 Atomic orbital electron populations 1.69816 1.07793 1.28476 1.48712 1.25860 0.95400 1.01686 0.93045 0.85797 0.79698 0.80342 0.76789 1.21367 1.22719 1.17757 1.18670 0.85767 0.94464 1.47211 0.91095 1.43286 1.06815 1.43292 1.23431 1.20642 0.90672 0.81811 0.80196 1.90506 1.56804 1.48647 1.52479 1.22862 0.89297 1.00082 0.98803 1.23396 0.94907 1.00601 0.95979 1.23284 0.95922 1.01663 0.93649 1.23594 0.93040 0.96676 0.97573 1.22608 0.96700 0.94535 1.00555 1.22706 0.97351 0.93805 1.00490 1.23378 0.97608 0.97295 0.96308 1.22547 0.95548 0.99835 0.88493 1.23199 1.00481 0.95373 1.02012 1.23298 1.02420 0.98645 0.97826 0.91890 0.94799 0.88917 0.88085 0.91585 0.85821 0.88377 0.90995 0.89172 0.93344 0.92379 0.93666 0.82876 0.90890 0.85157 0.84885 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.43 13.96 21.66 0.30 -59.13 16 2 C 0.04 2.75 4.86 84.93 0.41 3.16 16 3 Si 0.94 52.72 24.83 68.60 1.70 54.42 16 4 H -0.29 -17.24 6.48 99.48 0.64 -16.60 16 5 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 6 H -0.25 -13.06 6.73 99.48 0.67 -12.39 16 7 C -0.33 -19.72 8.64 84.04 0.73 -18.99 16 8 H 0.07 4.44 6.91 -2.91 -0.02 4.42 16 9 N -0.45 -22.03 2.50 -613.13 -1.53 -23.57 16 10 C 0.48 23.55 5.09 87.66 0.45 24.00 16 11 O -0.60 -36.05 12.58 -3.08 -0.04 -36.09 16 12 C -0.11 -3.80 0.87 -49.54 -0.04 -3.85 16 13 C -0.11 -3.20 5.26 33.57 0.18 -3.03 16 14 C -0.11 -2.16 6.41 33.57 0.22 -1.94 16 15 C -0.09 -1.89 5.14 -7.40 -0.04 -1.93 16 16 C -0.11 -1.99 6.20 32.14 0.20 -1.79 16 17 C -0.11 -2.80 5.23 32.13 0.17 -2.64 16 18 C -0.11 -3.55 5.68 33.36 0.19 -3.36 16 19 C 0.04 1.42 4.46 44.99 0.20 1.62 16 20 C -0.17 -5.67 9.83 30.60 0.30 -5.37 16 21 C -0.18 -5.83 10.06 30.59 0.31 -5.52 16 22 H 0.27 16.80 8.31 -92.71 -0.77 16.03 16 23 H 0.03 1.17 7.77 -2.39 -0.02 1.15 16 24 H 0.09 2.24 5.95 -2.39 -0.01 2.22 16 25 H 0.10 1.39 7.82 -2.39 -0.02 1.37 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.10 1.26 7.82 -2.39 -0.02 1.24 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.97 5.53 -2.39 -0.01 1.96 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.15 4.34 3.75 -2.39 -0.01 4.33 16 35 H 0.07 2.95 6.48 -2.39 -0.02 2.93 16 36 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -79.27 285.52 4.64 -74.63 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.95 Total: 9.36 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.26 Total: -19.63 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.23 Total: -82.69 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.04 Total: -36.09 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 1.70 Total: 54.42 kcal Total: -79.27 4.64 -74.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710863914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.881 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds