Wall clock time and date at job start Mon Mar 30 2020 07:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48490 * 109.47179 * 269.99956 * 3 2 1 5 5 H 1.48501 * 109.47112 * 30.00267 * 3 2 1 6 6 H 1.48511 * 109.46970 * 149.99957 * 3 2 1 7 7 C 1.37879 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47106 * 179.97438 * 10 9 7 12 12 O 1.42904 * 109.46817 * 180.02562 * 11 10 9 13 13 C 1.42902 * 113.99528 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46785 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47167 * 64.99807 * 14 13 12 16 16 C 1.39678 * 119.99677 * 180.02562 * 15 14 13 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 15 14 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 0.97001 * 120.00168 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47268 * 59.99656 * 9 7 2 24 24 H 1.09007 * 109.47375 * 300.00507 * 9 7 2 25 25 H 1.08998 * 109.47229 * 60.00210 * 10 9 7 26 26 H 1.09003 * 109.47274 * 299.99819 * 10 9 7 27 27 H 1.08998 * 109.46889 * 60.00022 * 11 10 9 28 28 H 1.08998 * 109.47240 * 299.99722 * 11 10 9 29 29 H 1.08992 * 109.47475 * 59.99679 * 13 12 11 30 30 H 1.09004 * 109.47140 * 299.99162 * 13 12 11 31 31 H 1.09002 * 109.46863 * 304.99469 * 14 13 12 32 32 H 1.09004 * 109.47027 * 184.99665 * 14 13 12 33 33 H 0.96998 * 120.00114 * 359.97438 * 15 14 13 34 34 H 1.07998 * 120.03739 * 359.69591 * 17 16 15 35 35 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4091 -6.0732 0.0018 13 6 1.7945 -7.3633 0.0018 14 6 2.8775 -8.4441 0.0031 15 7 3.6345 -8.3753 1.2555 16 6 4.6829 -9.2686 1.4877 17 6 5.4014 -9.2051 2.6749 18 6 6.4371 -10.0901 2.9016 19 6 6.7588 -11.0391 1.9485 20 6 6.0455 -11.1051 0.7656 21 6 5.0087 -10.2231 0.5325 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8534 -5.0451 -0.8886 28 1 0.8540 -5.0446 0.8914 29 1 1.1746 -7.4706 -0.8883 30 1 1.1741 -7.4702 0.8917 31 1 3.5516 -8.2839 -0.8383 32 1 2.4116 -9.4255 -0.0863 33 1 3.4082 -7.7090 1.9231 34 1 5.1533 -8.4615 3.4178 35 1 6.9964 -10.0411 3.8242 36 1 7.5689 -11.7303 2.1284 37 1 6.2991 -11.8477 0.0236 38 1 4.4523 -10.2749 -0.3918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715147755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:24 Heat of formation + Delta-G solvation = -40.141257 kcal Electronic energy + Delta-G solvation = -16823.258994 eV Core-core repulsion = 14050.808329 eV Total energy + Delta-G solvation = -2772.450665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47223 -37.97686 -35.60044 -33.85794 -31.77430 -31.01342 -30.36391 -27.70671 -26.42920 -23.52774 -22.90868 -22.21525 -21.23772 -20.17116 -17.67506 -16.74698 -16.30329 -16.10340 -16.01457 -15.27225 -14.48501 -14.40403 -14.16495 -13.96760 -13.55999 -13.40059 -13.17844 -12.60191 -12.30823 -11.73357 -11.64086 -11.46210 -11.33292 -11.01267 -10.89308 -10.57571 -10.45330 -10.17472 -9.89035 -9.47243 -9.32255 -9.13160 -8.99781 -8.37789 -7.46665 -6.03063 -4.05382 1.37017 1.56962 3.31287 3.34417 3.37262 3.41261 3.82167 3.87164 4.45162 4.78594 4.85833 4.90855 5.05323 5.13613 5.31309 5.33045 5.38316 5.41107 5.52359 5.59533 5.67121 5.74873 5.80459 5.94512 6.14236 6.24332 6.41573 6.56522 6.63961 6.65966 6.78779 7.05409 7.27599 7.46244 7.62978 7.67347 7.75009 7.96281 8.39143 9.01265 9.58894 11.08489 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.036216 B = 0.002967 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.959795 B = 9436.038522 C = 9948.848086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.389 6.389 13 C 0.048 3.952 14 C 0.129 3.871 15 N -0.740 5.740 16 C 0.221 3.779 17 C -0.198 4.198 18 C -0.072 4.072 19 C -0.188 4.188 20 C -0.073 4.073 21 C -0.203 4.203 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.405 0.595 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -21.962 2.402 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.014 4.014 12 O -0.308 6.308 13 C -0.029 4.029 14 C 0.004 3.996 15 N -0.369 5.369 16 C 0.117 3.883 17 C -0.221 4.221 18 C -0.091 4.091 19 C -0.208 4.208 20 C -0.092 4.092 21 C -0.226 4.226 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.278 -21.821 2.204 23.109 hybrid contribution -0.048 1.206 0.190 1.222 sum 7.230 -20.615 2.395 21.977 Atomic orbital electron populations 1.69962 1.06086 1.26684 1.50869 1.25030 0.94877 0.99346 0.95256 0.86559 0.79854 0.83261 0.78146 1.20617 1.21197 1.19801 1.21218 0.93141 0.90852 1.50611 0.92526 1.19045 0.93893 0.91091 0.97305 1.21650 0.99640 0.91695 1.01509 1.22815 0.92109 0.86898 0.99531 1.87945 1.34281 1.13189 1.95410 1.22639 0.94877 0.84428 1.00999 1.21375 0.93543 0.97195 0.87478 1.44679 1.34721 1.36884 1.20610 1.17887 0.87733 0.89324 0.93382 1.20628 1.00153 1.03689 0.97641 1.20861 0.95660 0.94088 0.98510 1.20859 1.02726 1.01748 0.95497 1.20867 0.94318 0.97333 0.96666 1.20634 1.02463 0.99385 1.00080 0.92958 0.96507 0.96504 0.92632 0.92587 0.93717 0.93799 0.91987 0.93004 0.91405 0.91148 0.76021 0.86298 0.86392 0.86760 0.86480 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.28 5.52 -26.73 -0.15 -2.43 16 11 C 0.06 1.09 5.94 37.16 0.22 1.31 16 12 O -0.39 -6.18 10.29 -35.23 -0.36 -6.54 16 13 C 0.05 0.55 6.07 37.16 0.23 0.78 16 14 C 0.13 1.33 5.30 -4.04 -0.02 1.31 16 15 N -0.74 -8.42 5.68 -58.63 -0.33 -8.76 16 16 C 0.22 2.59 6.65 -83.78 -0.56 2.03 16 17 C -0.20 -2.21 9.90 -39.38 -0.39 -2.60 16 18 C -0.07 -0.73 10.04 -39.61 -0.40 -1.13 16 19 C -0.19 -1.83 10.04 -39.54 -0.40 -2.23 16 20 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 21 C -0.20 -2.20 9.31 -39.38 -0.37 -2.57 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 32 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 33 H 0.40 4.63 8.48 -40.82 -0.35 4.28 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.11 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.13 6.74 -52.48 -0.35 0.78 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -31.07 323.00 -9.03 -40.10 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.14 Total: -0.33 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.78 Total: -19.85 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.40 Total: -35.01 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.36 Total: -6.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.07 -9.03 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715147755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.037 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds