Wall clock time and date at job start Mon Mar 30 2020 07:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48490 * 109.47179 * 269.99956 * 3 2 1 5 5 H 1.48501 * 109.47112 * 30.00267 * 3 2 1 6 6 H 1.48511 * 109.46970 * 149.99957 * 3 2 1 7 7 C 1.37879 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47106 * 179.97438 * 10 9 7 12 12 O 1.42904 * 109.46817 * 180.02562 * 11 10 9 13 13 C 1.42902 * 113.99528 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46785 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47167 * 64.99807 * 14 13 12 16 16 C 1.39678 * 119.99677 * 180.02562 * 15 14 13 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 15 14 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 0.97001 * 120.00168 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47268 * 59.99656 * 9 7 2 24 24 H 1.09007 * 109.47375 * 300.00507 * 9 7 2 25 25 H 1.08998 * 109.47229 * 60.00210 * 10 9 7 26 26 H 1.09003 * 109.47274 * 299.99819 * 10 9 7 27 27 H 1.08998 * 109.46889 * 60.00022 * 11 10 9 28 28 H 1.08998 * 109.47240 * 299.99722 * 11 10 9 29 29 H 1.08992 * 109.47475 * 59.99679 * 13 12 11 30 30 H 1.09004 * 109.47140 * 299.99162 * 13 12 11 31 31 H 1.09002 * 109.46863 * 304.99469 * 14 13 12 32 32 H 1.09004 * 109.47027 * 184.99665 * 14 13 12 33 33 H 0.96998 * 120.00114 * 359.97438 * 15 14 13 34 34 H 1.07998 * 120.03739 * 359.69591 * 17 16 15 35 35 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4091 -6.0732 0.0018 13 6 1.7945 -7.3633 0.0018 14 6 2.8775 -8.4441 0.0031 15 7 3.6345 -8.3753 1.2555 16 6 4.6829 -9.2686 1.4877 17 6 5.4014 -9.2051 2.6749 18 6 6.4371 -10.0901 2.9016 19 6 6.7588 -11.0391 1.9485 20 6 6.0455 -11.1051 0.7656 21 6 5.0087 -10.2231 0.5325 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8534 -5.0451 -0.8886 28 1 0.8540 -5.0446 0.8914 29 1 1.1746 -7.4706 -0.8883 30 1 1.1741 -7.4702 0.8917 31 1 3.5516 -8.2839 -0.8383 32 1 2.4116 -9.4255 -0.0863 33 1 3.4082 -7.7090 1.9231 34 1 5.1533 -8.4615 3.4178 35 1 6.9964 -10.0411 3.8242 36 1 7.5689 -11.7303 2.1284 37 1 6.2991 -11.8477 0.0236 38 1 4.4523 -10.2749 -0.3918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715147755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:23 Heat of formation + Delta-G solvation = -58.278069 kcal Electronic energy + Delta-G solvation = -16824.045465 eV Core-core repulsion = 14050.808329 eV Total energy + Delta-G solvation = -2773.237136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26747 -39.13564 -36.59748 -35.72331 -33.58988 -31.85297 -31.33838 -28.88117 -27.99768 -24.90358 -24.24802 -23.02860 -22.17971 -21.83862 -18.63299 -18.45019 -17.57914 -17.23624 -16.97785 -16.48462 -16.30999 -15.49458 -15.15236 -14.92893 -14.64423 -14.43246 -14.25714 -14.12339 -13.61364 -13.36209 -13.12177 -12.73356 -12.63935 -12.36576 -12.22938 -11.98013 -11.77862 -11.67946 -11.49943 -11.22086 -10.96026 -10.58733 -10.56517 -9.77241 -8.27830 -8.23310 -6.34297 0.59459 0.78563 1.39453 1.40676 1.52090 2.38225 2.51216 2.72863 3.07045 3.10139 3.92064 4.07077 4.14472 4.18732 4.22480 4.29442 4.43261 4.49380 4.57352 4.59913 4.68352 4.73715 4.79608 4.90475 4.96266 4.97441 5.15258 5.21494 5.46288 5.47255 5.66451 5.67895 5.80428 5.80648 6.03519 6.16054 6.29063 6.49199 6.81459 6.81852 7.35010 8.88669 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.036216 B = 0.002967 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.959795 B = 9436.038522 C = 9948.848086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.097 4.097 11 C 0.075 3.925 12 O -0.404 6.404 13 C 0.044 3.956 14 C 0.133 3.867 15 N -0.746 5.746 16 C 0.202 3.798 17 C -0.217 4.217 18 C -0.080 4.080 19 C -0.194 4.194 20 C -0.079 4.079 21 C -0.215 4.215 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.003 1.003 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.401 0.599 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 -22.803 2.288 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.134 4.134 11 C -0.001 4.001 12 O -0.324 6.324 13 C -0.033 4.033 14 C 0.009 3.991 15 N -0.376 5.376 16 C 0.098 3.902 17 C -0.239 4.239 18 C -0.099 4.099 19 C -0.214 4.214 20 C -0.097 4.097 21 C -0.238 4.238 22 H 0.074 0.926 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.236 0.764 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.282 -22.688 2.086 24.242 hybrid contribution -0.342 1.377 0.235 1.438 sum 7.939 -21.312 2.320 22.860 Atomic orbital electron populations 1.70079 1.07712 1.27918 1.51484 1.25970 0.95824 1.03345 0.94582 0.85434 0.78635 0.78336 0.78582 1.19666 1.20492 1.18903 1.21657 0.93526 0.92373 1.50880 0.92413 1.18918 0.94209 0.92457 0.95323 1.21385 0.98577 0.92442 1.01045 1.22464 0.91560 0.85903 1.00213 1.87894 1.34536 1.14404 1.95595 1.22891 0.95562 0.82473 1.02337 1.21413 0.93083 0.97759 0.86868 1.44746 1.35043 1.36956 1.20843 1.18118 0.88183 0.89899 0.93993 1.20833 1.00852 1.04388 0.97871 1.21166 0.95437 0.93816 0.99459 1.21200 1.03107 1.01828 0.95286 1.21205 0.93812 0.97448 0.97277 1.20865 1.03074 0.99519 1.00360 0.92620 0.98433 0.98428 0.93020 0.93013 0.93037 0.93161 0.90249 0.91978 0.92111 0.88781 0.76416 0.86107 0.84566 0.84684 0.84268 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.10 -4.15 5.52 30.59 0.17 -3.98 16 11 C 0.07 2.57 5.94 71.98 0.43 2.99 16 12 O -0.40 -12.44 10.29 -148.98 -1.53 -13.97 16 13 C 0.04 0.94 6.07 71.98 0.44 1.38 16 14 C 0.13 2.55 5.30 86.38 0.46 3.00 16 15 N -0.75 -16.48 5.68 -339.40 -1.93 -18.40 16 16 C 0.20 4.60 6.65 38.21 0.25 4.85 16 17 C -0.22 -4.73 9.90 22.40 0.22 -4.51 16 18 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 19 C -0.19 -3.43 10.04 22.29 0.22 -3.20 16 20 C -0.08 -1.42 10.04 22.25 0.22 -1.19 16 21 C -0.22 -4.41 9.31 22.40 0.21 -4.20 16 22 H 0.27 15.07 8.31 -92.71 -0.77 14.29 16 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.06 1.25 7.95 -2.39 -0.02 1.24 16 32 H 0.09 1.37 7.95 -2.38 -0.02 1.35 16 33 H 0.40 9.08 8.48 -92.71 -0.79 8.29 16 34 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.13 2.25 6.74 -2.91 -0.02 2.23 16 Total: -1.00 -66.12 323.00 2.78 -63.35 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.23 Total: 14.24 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 3.69 Total: -35.41 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.64 Total: -74.78 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.53 Total: -13.97 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.12 2.78 -63.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715147755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.071 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds