Wall clock time and date at job start Mon Mar 30 2020 07:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47217 * 270.00475 * 3 2 1 5 5 H 1.48502 * 109.46847 * 30.00538 * 3 2 1 6 6 H 1.48500 * 109.46917 * 150.00249 * 3 2 1 7 7 C 1.37874 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00438 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.51995 * 299.92409 * 9 7 2 11 11 C 1.53040 * 109.49878 * 179.83631 * 9 7 2 12 12 C 1.53076 * 109.65626 * 178.74845 * 11 9 7 13 13 C 1.53194 * 109.29170 * 61.15491 * 12 11 9 14 14 N 1.46920 * 108.89811 * 305.57643 * 13 12 11 15 15 C 1.34774 * 120.63447 * 233.56144 * 14 13 12 16 16 O 1.21616 * 120.00314 * 176.48659 * 15 14 13 17 17 C 1.47097 * 119.99957 * 356.48682 * 15 14 13 18 18 C 1.32997 * 120.00305 * 172.75951 * 17 15 14 19 19 C 1.50701 * 119.99696 * 353.03713 * 18 17 15 20 20 C 1.52998 * 117.49742 * 178.43040 * 19 18 17 21 21 C 1.52999 * 117.49728 * 109.77049 * 19 18 17 22 22 C 1.46929 * 118.73584 * 53.53804 * 14 13 12 23 23 H 0.96998 * 120.00053 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46297 * 298.70542 * 11 9 7 25 25 H 1.09002 * 109.45613 * 58.68225 * 11 9 7 26 26 H 1.09000 * 109.39018 * 301.28192 * 12 11 9 27 27 H 1.08995 * 109.62286 * 181.17128 * 12 11 9 28 28 H 1.09000 * 109.58649 * 185.71757 * 13 12 11 29 29 H 1.08997 * 109.58704 * 65.43787 * 13 12 11 30 30 H 1.08000 * 119.99964 * 352.76136 * 17 15 14 31 31 H 1.07999 * 120.00153 * 173.04272 * 18 17 15 32 32 H 1.09001 * 115.54901 * 324.10101 * 19 18 17 33 33 H 1.08998 * 117.49943 * 359.97438 * 20 19 18 34 34 H 1.09001 * 117.49957 * 145.01946 * 20 19 18 35 35 H 1.09001 * 117.49651 * 214.97982 * 21 19 18 36 36 H 1.09001 * 117.49971 * 359.97438 * 21 19 18 37 37 H 1.09000 * 109.58598 * 66.18103 * 22 14 13 38 38 H 1.09001 * 109.58612 * 186.60976 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5586 0.8900 11 6 2.2450 -3.6628 -0.0053 12 6 1.4837 -4.9905 0.0262 13 6 0.6023 -5.0982 -1.2222 14 7 -0.2565 -3.9089 -1.3024 15 6 -1.5932 -4.0337 -1.4205 16 8 -2.2988 -3.0432 -1.4216 17 6 -2.1989 -5.3682 -1.5479 18 6 -3.5216 -5.5036 -1.5196 19 6 -4.3939 -4.3168 -1.2007 20 6 -5.9090 -4.5283 -1.2197 21 6 -5.2331 -3.7311 -2.3380 22 6 0.3697 -2.5807 -1.2509 23 1 -0.4850 0.8400 0.0004 24 1 2.8536 -3.6169 -0.9083 25 1 2.8896 -3.5934 0.8710 26 1 0.8578 -5.0277 0.9178 27 1 2.1924 -5.8185 0.0437 28 1 -0.0173 -5.9925 -1.1559 29 1 1.2318 -5.1549 -2.1102 30 1 -1.5694 -6.2380 -1.6645 31 1 -3.9706 -6.4642 -1.7249 32 1 -3.9918 -3.6226 -0.4628 33 1 -6.2750 -5.5258 -1.4632 34 1 -6.5039 -3.9730 -0.4945 35 1 -5.3835 -2.6516 -2.3481 36 1 -5.1540 -4.2039 -3.3170 37 1 0.9820 -2.4307 -2.1401 38 1 -0.4035 -1.8138 -1.2035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:52 Heat of formation + Delta-G solvation = 4.216167 kcal Electronic energy + Delta-G solvation = -18515.509655 eV Core-core repulsion = 15744.982473 eV Total energy + Delta-G solvation = -2770.527182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.47401 -37.47217 -36.24091 -33.38287 -32.13354 -31.61347 -29.70034 -25.44747 -24.89229 -22.89035 -22.14461 -21.77634 -20.71982 -19.14693 -17.80126 -16.82527 -16.13739 -15.46408 -14.77605 -14.54005 -14.17250 -14.03373 -13.64607 -13.14047 -12.89832 -12.63411 -12.35214 -12.13541 -11.81147 -11.42252 -11.28456 -10.98394 -10.86847 -10.77012 -10.48524 -10.39509 -10.19624 -10.06582 -9.82339 -9.13169 -9.03496 -8.91888 -8.64057 -8.40168 -7.61310 -5.96792 -4.05710 1.69439 3.32162 3.39418 3.41741 3.81871 3.92607 4.21360 4.44946 4.78192 5.03252 5.16336 5.29673 5.32851 5.34667 5.51458 5.56410 5.61278 5.74248 5.76106 6.03741 6.05568 6.21223 6.29621 6.35015 6.44789 6.46023 6.63885 6.70525 6.77247 6.92080 7.01534 7.22916 7.38503 7.68785 7.91976 8.04544 8.36720 8.43052 8.96496 9.03739 9.59701 11.08238 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.006521 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.665233 B = 4293.044505 C = 5328.502787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.108 3.892 14 N -0.604 5.604 15 C 0.531 3.469 16 O -0.530 6.530 17 C -0.210 4.210 18 C -0.051 4.051 19 C -0.115 4.115 20 C -0.192 4.192 21 C -0.155 4.155 22 C 0.113 3.887 23 H 0.263 0.737 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -12.482 -3.218 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.336 5.336 15 C 0.320 3.680 16 O -0.409 6.409 17 C -0.230 4.230 18 C -0.071 4.071 19 C -0.133 4.133 20 C -0.229 4.229 21 C -0.192 4.192 22 C -0.008 4.008 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.544 -11.805 -3.221 13.433 hybrid contribution 0.676 0.715 -0.039 0.985 sum -4.868 -11.089 -3.260 12.542 Atomic orbital electron populations 1.69894 1.05704 1.26738 1.49364 1.25052 0.94878 0.99209 0.94887 0.86603 0.79810 0.83547 0.78092 1.20665 1.21227 1.19949 1.21084 0.92876 0.90187 1.51823 0.92430 1.18961 0.92611 0.92204 0.94126 0.95388 1.21631 0.98580 0.94150 1.00470 1.21954 0.98592 0.99013 0.97661 1.21662 0.93466 0.88145 0.98270 1.48420 1.05474 1.08736 1.71015 1.18512 0.82347 0.89249 0.77872 1.90769 1.60225 1.39553 1.50306 1.22894 0.95952 0.97447 1.06750 1.22985 0.93760 0.97496 0.92851 1.21425 0.90074 0.98523 1.03293 1.23083 0.95730 1.01355 1.02779 1.22759 1.03024 0.99939 0.93503 1.22245 0.98679 0.81554 0.98273 0.92715 0.93264 0.93102 0.92195 0.92288 0.90978 0.92308 0.85668 0.86254 0.85126 0.89314 0.88913 0.88612 0.89367 0.94237 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 11.39 55.43 0.63 -25.23 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.27 8.56 -34.44 -0.29 -14.57 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.04 1.01 2.26 -91.65 -0.21 0.80 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.23 5.10 -26.67 -0.14 -2.37 16 12 C -0.13 -2.19 6.09 -26.59 -0.16 -2.36 16 13 C 0.11 1.72 6.31 -3.71 -0.02 1.70 16 14 N -0.60 -12.37 2.97 -174.16 -0.52 -12.88 16 15 C 0.53 10.80 7.54 -12.67 -0.10 10.70 16 16 O -0.53 -12.67 12.84 5.26 0.07 -12.60 16 17 C -0.21 -3.18 9.24 -37.81 -0.35 -3.53 16 18 C -0.05 -0.70 9.74 -36.13 -0.35 -1.05 16 19 C -0.12 -1.77 4.19 -91.77 -0.38 -2.15 16 20 C -0.19 -2.33 10.24 -26.69 -0.27 -2.61 16 21 C -0.16 -2.17 10.24 -26.69 -0.27 -2.45 16 22 C 0.11 2.78 5.41 -3.71 -0.02 2.76 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.92 5.41 -51.93 -0.28 0.64 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.13 1.50 6.05 -52.49 -0.32 1.18 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.13 2.47 6.49 -51.93 -0.34 2.13 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.12 3.52 5.11 -51.93 -0.27 3.25 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -30.79 305.02 -8.72 -39.51 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.82 Total: 3.68 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.67 Total: -13.47 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.11 Total: -38.12 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.79 -8.72 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.731 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds