Wall clock time and date at job start Mon Mar 30 2020 07:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47217 * 270.00475 * 3 2 1 5 5 H 1.48502 * 109.46847 * 30.00538 * 3 2 1 6 6 H 1.48500 * 109.46917 * 150.00249 * 3 2 1 7 7 C 1.37874 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00438 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.51995 * 299.92409 * 9 7 2 11 11 C 1.53040 * 109.49878 * 179.83631 * 9 7 2 12 12 C 1.53076 * 109.65626 * 178.74845 * 11 9 7 13 13 C 1.53194 * 109.29170 * 61.15491 * 12 11 9 14 14 N 1.46920 * 108.89811 * 305.57643 * 13 12 11 15 15 C 1.34774 * 120.63447 * 233.56144 * 14 13 12 16 16 O 1.21616 * 120.00314 * 176.48659 * 15 14 13 17 17 C 1.47097 * 119.99957 * 356.48682 * 15 14 13 18 18 C 1.32997 * 120.00305 * 172.75951 * 17 15 14 19 19 C 1.50701 * 119.99696 * 353.03713 * 18 17 15 20 20 C 1.52998 * 117.49742 * 178.43040 * 19 18 17 21 21 C 1.52999 * 117.49728 * 109.77049 * 19 18 17 22 22 C 1.46929 * 118.73584 * 53.53804 * 14 13 12 23 23 H 0.96998 * 120.00053 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46297 * 298.70542 * 11 9 7 25 25 H 1.09002 * 109.45613 * 58.68225 * 11 9 7 26 26 H 1.09000 * 109.39018 * 301.28192 * 12 11 9 27 27 H 1.08995 * 109.62286 * 181.17128 * 12 11 9 28 28 H 1.09000 * 109.58649 * 185.71757 * 13 12 11 29 29 H 1.08997 * 109.58704 * 65.43787 * 13 12 11 30 30 H 1.08000 * 119.99964 * 352.76136 * 17 15 14 31 31 H 1.07999 * 120.00153 * 173.04272 * 18 17 15 32 32 H 1.09001 * 115.54901 * 324.10101 * 19 18 17 33 33 H 1.08998 * 117.49943 * 359.97438 * 20 19 18 34 34 H 1.09001 * 117.49957 * 145.01946 * 20 19 18 35 35 H 1.09001 * 117.49651 * 214.97982 * 21 19 18 36 36 H 1.09001 * 117.49971 * 359.97438 * 21 19 18 37 37 H 1.09000 * 109.58598 * 66.18103 * 22 14 13 38 38 H 1.09001 * 109.58612 * 186.60976 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5586 0.8900 11 6 2.2450 -3.6628 -0.0053 12 6 1.4837 -4.9905 0.0262 13 6 0.6023 -5.0982 -1.2222 14 7 -0.2565 -3.9089 -1.3024 15 6 -1.5932 -4.0337 -1.4205 16 8 -2.2988 -3.0432 -1.4216 17 6 -2.1989 -5.3682 -1.5479 18 6 -3.5216 -5.5036 -1.5196 19 6 -4.3939 -4.3168 -1.2007 20 6 -5.9090 -4.5283 -1.2197 21 6 -5.2331 -3.7311 -2.3380 22 6 0.3697 -2.5807 -1.2509 23 1 -0.4850 0.8400 0.0004 24 1 2.8536 -3.6169 -0.9083 25 1 2.8896 -3.5934 0.8710 26 1 0.8578 -5.0277 0.9178 27 1 2.1924 -5.8185 0.0437 28 1 -0.0173 -5.9925 -1.1559 29 1 1.2318 -5.1549 -2.1102 30 1 -1.5694 -6.2380 -1.6645 31 1 -3.9706 -6.4642 -1.7249 32 1 -3.9918 -3.6226 -0.4628 33 1 -6.2750 -5.5258 -1.4632 34 1 -6.5039 -3.9730 -0.4945 35 1 -5.3835 -2.6516 -2.3481 36 1 -5.1540 -4.2039 -3.3170 37 1 0.9820 -2.4307 -2.1401 38 1 -0.4035 -1.8138 -1.2035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:51 Heat of formation + Delta-G solvation = -14.130695 kcal Electronic energy + Delta-G solvation = -18516.305235 eV Core-core repulsion = 15744.982473 eV Total energy + Delta-G solvation = -2771.322762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00597 -38.83195 -37.68519 -35.30110 -33.60653 -33.08940 -31.46800 -27.32260 -26.51511 -24.28232 -23.39938 -23.17414 -22.09914 -20.77499 -19.28232 -18.44694 -17.97106 -16.80115 -16.57712 -16.08777 -15.73998 -15.38887 -15.13510 -14.59628 -14.49799 -14.21067 -13.85293 -13.75683 -13.44634 -12.89631 -12.65809 -12.53432 -12.39950 -12.28057 -12.24073 -11.91558 -11.77995 -11.63389 -11.23249 -10.98029 -10.91152 -10.55640 -10.33727 -9.96900 -9.26509 -8.11796 -6.29606 0.51059 1.38893 1.39284 1.50470 2.32482 2.41705 2.47323 3.09876 3.16131 3.68884 3.85844 4.07403 4.11307 4.20030 4.22105 4.31273 4.46605 4.54120 4.62286 4.77691 4.78548 4.84495 4.88683 5.00064 5.10125 5.23654 5.26203 5.28035 5.30379 5.32446 5.41777 5.54603 5.64181 5.73968 5.90667 6.01148 6.33083 6.81144 6.83780 7.40014 7.48840 8.91254 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.006521 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.665233 B = 4293.044505 C = 5328.502787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.018 1.018 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.103 3.897 14 N -0.612 5.612 15 C 0.514 3.486 16 O -0.583 6.583 17 C -0.224 4.224 18 C -0.025 4.025 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.167 4.167 22 C 0.126 3.874 23 H 0.259 0.741 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.031 0.969 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -15.813 -3.979 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.000 1.000 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.019 4.019 14 N -0.344 5.344 15 C 0.307 3.693 16 O -0.466 6.466 17 C -0.244 4.244 18 C -0.045 4.045 19 C -0.168 4.168 20 C -0.193 4.193 21 C -0.204 4.204 22 C 0.004 3.996 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.186 0.814 31 H 0.190 0.810 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.206 -15.179 -3.978 16.532 hybrid contribution 0.513 1.788 0.229 1.874 sum -4.693 -13.391 -3.749 14.677 Atomic orbital electron populations 1.70110 1.07477 1.27158 1.50654 1.25926 0.95571 1.03023 0.94588 0.85541 0.78752 0.78974 0.78322 1.19982 1.21315 1.18593 1.21539 0.93274 0.91604 1.51158 0.92013 1.18891 0.93088 0.93845 0.92238 0.99969 1.21525 0.97673 0.94399 1.00778 1.21926 0.99005 0.98003 0.97534 1.22038 0.93687 0.87495 0.98682 1.48472 1.06380 1.08482 1.71048 1.19574 0.81998 0.91148 0.76617 1.90756 1.61337 1.41969 1.52517 1.22886 0.96957 0.95303 1.09290 1.23430 0.92978 0.98418 0.89640 1.21338 0.92715 0.99396 1.03306 1.23187 0.92885 1.02543 1.00701 1.22795 1.03671 0.99339 0.94573 1.21609 0.97079 0.83413 0.97528 0.93241 0.92514 0.93138 0.93351 0.87645 0.86755 0.90495 0.81448 0.80990 0.90108 0.85689 0.88727 0.90797 0.87720 0.95077 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.30 11.39 21.45 0.24 -57.05 16 2 C 0.01 0.47 5.30 84.65 0.45 0.92 16 3 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -30.49 8.56 25.60 0.22 -30.28 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.02 2.26 -11.46 -0.03 2.00 16 10 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 11 C -0.11 -4.22 5.10 30.63 0.16 -4.07 16 12 C -0.13 -3.83 6.09 30.68 0.19 -3.64 16 13 C 0.10 2.96 6.31 86.36 0.55 3.51 16 14 N -0.61 -25.37 2.97 -823.18 -2.45 -27.82 16 15 C 0.51 21.41 7.54 86.57 0.65 22.06 16 16 O -0.58 -30.02 12.84 -4.08 -0.05 -30.07 16 17 C -0.22 -6.22 9.24 23.43 0.22 -6.01 16 18 C -0.03 -0.62 9.74 24.52 0.24 -0.38 16 19 C -0.15 -4.55 4.19 -11.54 -0.05 -4.60 16 20 C -0.16 -3.44 10.24 30.62 0.31 -3.13 16 21 C -0.17 -4.63 10.24 30.62 0.31 -4.32 16 22 C 0.13 6.57 5.41 86.36 0.47 7.03 16 23 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.11 2.36 5.41 -2.39 -0.01 2.34 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.17 3.12 6.05 -2.91 -0.02 3.10 16 31 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.08 3.31 6.49 -2.39 -0.02 3.29 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 4.66 5.11 -2.39 -0.01 4.65 16 Total: -1.00 -75.70 305.02 4.49 -71.21 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.03 Total: 17.31 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.68 Total: -20.89 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.20 Total: -84.87 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.05 Total: -30.07 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.70 4.49 -71.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.083 kcal (2) G-P(sol) polarization free energy of solvation -75.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds