Wall clock time and date at job start Mon Mar 30 2020 07:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99926 * 2 1 4 4 H 1.48502 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47436 * 299.99824 * 3 2 1 6 6 H 1.48503 * 109.47133 * 60.00280 * 3 2 1 7 7 C 1.37881 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99894 * 0.27589 * 7 2 1 10 10 H 1.09002 * 109.50074 * 59.72122 * 9 7 2 11 11 C 1.53045 * 109.49742 * 179.78976 * 9 7 2 12 12 C 1.53045 * 109.53626 * 181.31688 * 11 9 7 13 13 C 1.53197 * 109.31015 * 298.63047 * 12 11 9 14 14 N 1.46929 * 108.77409 * 54.64345 * 13 12 11 15 15 C 1.34772 * 120.63334 * 126.43164 * 14 13 12 16 16 O 1.21608 * 120.00390 * 174.83134 * 15 14 13 17 17 C 1.47107 * 119.99679 * 354.82577 * 15 14 13 18 18 C 1.32996 * 119.99769 * 183.86925 * 17 15 14 19 19 C 1.50707 * 119.99885 * 352.78607 * 18 17 15 20 20 C 1.53003 * 117.49506 * 178.95849 * 19 18 17 21 21 C 1.52997 * 117.49526 * 110.33498 * 19 18 17 22 22 C 1.46930 * 118.76270 * 306.40441 * 14 13 12 23 23 H 0.97002 * 120.00131 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.45548 * 301.33692 * 11 9 7 25 25 H 1.08996 * 109.45611 * 61.29523 * 11 9 7 26 26 H 1.08994 * 109.49801 * 58.58581 * 12 11 9 27 27 H 1.09003 * 109.49043 * 178.65171 * 12 11 9 28 28 H 1.08999 * 109.57973 * 174.42333 * 13 12 11 29 29 H 1.08994 * 109.58913 * 294.84902 * 13 12 11 30 30 H 1.07996 * 120.00045 * 3.86598 * 17 15 14 31 31 H 1.08000 * 119.99797 * 172.79142 * 18 17 15 32 32 H 1.09004 * 115.54866 * 324.66231 * 19 18 17 33 33 H 1.08999 * 117.49882 * 359.97438 * 20 19 18 34 34 H 1.09003 * 117.49290 * 145.02262 * 20 19 18 35 35 H 1.08996 * 117.49495 * 214.97244 * 21 19 18 36 36 H 1.08998 * 117.50248 * 0.02562 * 21 19 18 37 37 H 1.09004 * 109.56343 * 293.79237 * 22 14 13 38 38 H 1.09000 * 109.61571 * 173.35664 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0074 10 1 0.6241 -2.5526 -0.8975 11 6 2.2450 -3.6628 -0.0119 12 6 1.4809 -4.9883 -0.0520 13 6 0.6045 -5.1059 1.1990 14 7 -0.2542 -3.9170 1.2882 15 6 -1.5906 -4.0426 1.4092 16 8 -2.2815 -3.0559 1.5765 17 6 -2.2136 -5.3734 1.3388 18 6 -3.5377 -5.4908 1.3809 19 6 -4.3927 -4.2823 1.6634 20 6 -5.9102 -4.4776 1.6745 21 6 -5.2428 -3.7345 0.5153 22 6 0.3712 -2.5882 1.2436 23 1 -0.4850 0.8400 0.0004 24 1 2.8880 -3.5877 -0.8887 25 1 2.8552 -3.6226 0.8904 26 1 0.8516 -5.0187 -0.9414 27 1 2.1897 -5.8160 -0.0793 28 1 -0.0153 -5.9997 1.1281 29 1 1.2374 -5.1669 2.0842 30 1 -1.5958 -6.2550 1.2528 31 1 -4.0002 -6.4522 1.2128 32 1 -3.9723 -3.5629 2.3663 33 1 -6.2901 -5.4800 1.4770 34 1 -6.4884 -3.8866 2.3847 35 1 -5.3821 -2.6547 0.4631 36 1 -5.1840 -4.2483 -0.4441 37 1 0.9848 -2.4436 2.1328 38 1 -0.4020 -1.8211 1.2018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:56 Heat of formation + Delta-G solvation = 5.825971 kcal Electronic energy + Delta-G solvation = -18525.181482 eV Core-core repulsion = 15754.724106 eV Total energy + Delta-G solvation = -2770.457376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49080 -37.47954 -36.24850 -33.39059 -32.13051 -31.62438 -29.70801 -25.45827 -24.90690 -22.87796 -22.13085 -21.79143 -20.69596 -19.16249 -17.84913 -16.84608 -16.16124 -15.40620 -14.83110 -14.44145 -14.21296 -14.02162 -13.65150 -13.24989 -12.95838 -12.62003 -12.30862 -12.00847 -11.83645 -11.47138 -11.31734 -10.99103 -10.90713 -10.74468 -10.46698 -10.38265 -10.21019 -10.04237 -9.85029 -9.10483 -9.07050 -8.89928 -8.60262 -8.40184 -7.62797 -5.97957 -4.06524 1.69036 3.30922 3.39322 3.42402 3.81779 3.92604 4.21429 4.44483 4.78821 5.03337 5.17462 5.29914 5.32263 5.34113 5.52864 5.55251 5.61692 5.74573 5.76756 6.03754 6.07982 6.21126 6.30864 6.34495 6.45577 6.47114 6.63245 6.71542 6.78321 6.91872 7.00740 7.22476 7.37862 7.68197 7.90967 8.03715 8.35983 8.42202 8.95798 9.03195 9.59012 11.07348 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.006578 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.125452 B = 4255.804342 C = 5284.273751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.603 5.603 15 C 0.534 3.466 16 O -0.534 6.534 17 C -0.211 4.211 18 C -0.050 4.050 19 C -0.122 4.122 20 C -0.192 4.192 21 C -0.157 4.157 22 C 0.114 3.886 23 H 0.262 0.738 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 -12.441 2.488 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.016 4.016 14 N -0.335 5.335 15 C 0.323 3.677 16 O -0.413 6.413 17 C -0.232 4.232 18 C -0.070 4.070 19 C -0.140 4.140 20 C -0.229 4.229 21 C -0.194 4.194 22 C -0.007 4.007 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.501 -11.770 2.578 13.245 hybrid contribution 0.645 0.713 -0.114 0.968 sum -4.856 -11.057 2.464 12.326 Atomic orbital electron populations 1.69903 1.05728 1.26655 1.49481 1.25055 0.94878 0.99242 0.94872 0.86544 0.80058 0.83845 0.77612 1.19796 1.21033 1.20981 1.21121 0.92925 0.90160 1.51682 0.92353 1.18978 0.92641 0.92253 0.94104 0.95399 1.21624 0.98553 0.94165 1.00493 1.21957 0.98626 0.99027 0.97660 1.21695 0.93477 0.88182 0.98274 1.48430 1.05458 1.08769 1.70890 1.18497 0.82259 0.89151 0.77767 1.90716 1.61203 1.39850 1.49536 1.22887 0.95892 0.97526 1.06868 1.23007 0.93826 0.97501 0.92658 1.21629 0.90009 0.98617 1.03704 1.23059 0.95797 1.01500 1.02568 1.22771 1.02997 1.00465 0.93159 1.22245 0.98662 0.81438 0.98308 0.92761 0.93095 0.93228 0.92175 0.92329 0.90890 0.92185 0.85644 0.86300 0.84381 0.89363 0.88961 0.88539 0.89299 0.94208 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 11.40 55.43 0.63 -25.21 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.23 5.11 -26.68 -0.14 -2.36 16 12 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 13 C 0.11 1.70 6.35 -3.71 -0.02 1.68 16 14 N -0.60 -12.35 2.97 -174.15 -0.52 -12.87 16 15 C 0.53 10.87 7.60 -12.66 -0.10 10.77 16 16 O -0.53 -12.71 12.60 5.27 0.07 -12.64 16 17 C -0.21 -3.22 9.35 -37.80 -0.35 -3.57 16 18 C -0.05 -0.69 9.74 -36.12 -0.35 -1.04 16 19 C -0.12 -1.87 4.39 -91.77 -0.40 -2.27 16 20 C -0.19 -2.33 10.23 -26.73 -0.27 -2.61 16 21 C -0.16 -2.27 10.23 -26.73 -0.27 -2.54 16 22 C 0.11 2.80 5.39 -3.70 -0.02 2.78 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.93 5.30 -51.93 -0.28 0.65 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.13 1.52 5.86 -52.49 -0.31 1.21 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.14 2.53 6.11 -51.93 -0.32 2.22 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.12 3.50 5.17 -51.93 -0.27 3.23 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -30.74 304.54 -8.72 -39.46 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.78 Total: 3.90 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.69 Total: -13.62 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.11 Total: -38.08 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.74 -8.72 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.290 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds