Wall clock time and date at job start Mon Mar 30 2020 07:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99926 * 2 1 4 4 H 1.48502 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47436 * 299.99824 * 3 2 1 6 6 H 1.48503 * 109.47133 * 60.00280 * 3 2 1 7 7 C 1.37881 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99894 * 0.27589 * 7 2 1 10 10 H 1.09002 * 109.50074 * 59.72122 * 9 7 2 11 11 C 1.53045 * 109.49742 * 179.78976 * 9 7 2 12 12 C 1.53045 * 109.53626 * 181.31688 * 11 9 7 13 13 C 1.53197 * 109.31015 * 298.63047 * 12 11 9 14 14 N 1.46929 * 108.77409 * 54.64345 * 13 12 11 15 15 C 1.34772 * 120.63334 * 126.43164 * 14 13 12 16 16 O 1.21608 * 120.00390 * 174.83134 * 15 14 13 17 17 C 1.47107 * 119.99679 * 354.82577 * 15 14 13 18 18 C 1.32996 * 119.99769 * 183.86925 * 17 15 14 19 19 C 1.50707 * 119.99885 * 352.78607 * 18 17 15 20 20 C 1.53003 * 117.49506 * 178.95849 * 19 18 17 21 21 C 1.52997 * 117.49526 * 110.33498 * 19 18 17 22 22 C 1.46930 * 118.76270 * 306.40441 * 14 13 12 23 23 H 0.97002 * 120.00131 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.45548 * 301.33692 * 11 9 7 25 25 H 1.08996 * 109.45611 * 61.29523 * 11 9 7 26 26 H 1.08994 * 109.49801 * 58.58581 * 12 11 9 27 27 H 1.09003 * 109.49043 * 178.65171 * 12 11 9 28 28 H 1.08999 * 109.57973 * 174.42333 * 13 12 11 29 29 H 1.08994 * 109.58913 * 294.84902 * 13 12 11 30 30 H 1.07996 * 120.00045 * 3.86598 * 17 15 14 31 31 H 1.08000 * 119.99797 * 172.79142 * 18 17 15 32 32 H 1.09004 * 115.54866 * 324.66231 * 19 18 17 33 33 H 1.08999 * 117.49882 * 359.97438 * 20 19 18 34 34 H 1.09003 * 117.49290 * 145.02262 * 20 19 18 35 35 H 1.08996 * 117.49495 * 214.97244 * 21 19 18 36 36 H 1.08998 * 117.50248 * 0.02562 * 21 19 18 37 37 H 1.09004 * 109.56343 * 293.79237 * 22 14 13 38 38 H 1.09000 * 109.61571 * 173.35664 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0074 10 1 0.6241 -2.5526 -0.8975 11 6 2.2450 -3.6628 -0.0119 12 6 1.4809 -4.9883 -0.0520 13 6 0.6045 -5.1059 1.1990 14 7 -0.2542 -3.9170 1.2882 15 6 -1.5906 -4.0426 1.4092 16 8 -2.2815 -3.0559 1.5765 17 6 -2.2136 -5.3734 1.3388 18 6 -3.5377 -5.4908 1.3809 19 6 -4.3927 -4.2823 1.6634 20 6 -5.9102 -4.4776 1.6745 21 6 -5.2428 -3.7345 0.5153 22 6 0.3712 -2.5882 1.2436 23 1 -0.4850 0.8400 0.0004 24 1 2.8880 -3.5877 -0.8887 25 1 2.8552 -3.6226 0.8904 26 1 0.8516 -5.0187 -0.9414 27 1 2.1897 -5.8160 -0.0793 28 1 -0.0153 -5.9997 1.1281 29 1 1.2374 -5.1669 2.0842 30 1 -1.5958 -6.2550 1.2528 31 1 -4.0002 -6.4522 1.2128 32 1 -3.9723 -3.5629 2.3663 33 1 -6.2901 -5.4800 1.4770 34 1 -6.4884 -3.8866 2.3847 35 1 -5.3821 -2.6547 0.4631 36 1 -5.1840 -4.2483 -0.4441 37 1 0.9848 -2.4436 2.1328 38 1 -0.4020 -1.8211 1.2018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:55 Heat of formation + Delta-G solvation = -12.365363 kcal Electronic energy + Delta-G solvation = -18525.970318 eV Core-core repulsion = 15754.724106 eV Total energy + Delta-G solvation = -2771.246211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02186 -38.84716 -37.68785 -35.30461 -33.60193 -33.10330 -31.46881 -27.32907 -26.52780 -24.27879 -23.40827 -23.17496 -22.06494 -20.78704 -19.33053 -18.47328 -17.98536 -16.73862 -16.61526 -16.05360 -15.74199 -15.39376 -15.12637 -14.71914 -14.50462 -14.18018 -14.00239 -13.49871 -13.47064 -12.92490 -12.67862 -12.58124 -12.40745 -12.29986 -12.21429 -11.91001 -11.77989 -11.62121 -11.24566 -11.00282 -10.88123 -10.55861 -10.26181 -9.98270 -9.27162 -8.12528 -6.29724 0.49810 1.37899 1.39167 1.51524 2.30404 2.41466 2.48551 3.09416 3.15947 3.69076 3.84452 4.07680 4.12007 4.19564 4.21942 4.30827 4.47886 4.53023 4.62622 4.77279 4.78770 4.84914 4.89597 4.99753 5.10363 5.23329 5.25620 5.28202 5.31221 5.33872 5.42080 5.54861 5.66886 5.73190 5.90449 6.00617 6.33090 6.80447 6.83814 7.39886 7.48057 8.91003 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.006578 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.125452 B = 4255.804342 C = 5284.273751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.016 1.016 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.102 3.898 14 N -0.612 5.612 15 C 0.517 3.483 16 O -0.586 6.586 17 C -0.225 4.225 18 C -0.026 4.026 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.175 4.175 22 C 0.128 3.872 23 H 0.259 0.741 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -15.747 2.601 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.020 4.020 14 N -0.343 5.343 15 C 0.309 3.691 16 O -0.469 6.469 17 C -0.246 4.246 18 C -0.045 4.045 19 C -0.172 4.172 20 C -0.189 4.189 21 C -0.213 4.213 22 C 0.005 3.995 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.048 0.952 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.220 -15.119 2.688 16.219 hybrid contribution 0.501 1.779 -0.136 1.853 sum -4.719 -13.340 2.553 14.379 Atomic orbital electron populations 1.70108 1.07471 1.27118 1.50759 1.25920 0.95574 1.03012 0.94597 0.85493 0.79306 0.79360 0.77444 1.18342 1.20762 1.20885 1.21569 0.93287 0.91604 1.50997 0.92020 1.18904 0.93104 0.93844 0.92225 0.99736 1.21522 0.97665 0.94447 1.00763 1.21922 0.99021 0.97970 0.97540 1.22072 0.93695 0.87548 0.98665 1.48480 1.06354 1.08511 1.70938 1.19552 0.81963 0.91018 0.76546 1.90712 1.62266 1.42218 1.51675 1.22882 0.96821 0.95442 1.09408 1.23453 0.93127 0.98483 0.89429 1.21560 0.92579 0.99357 1.03661 1.23161 0.93034 1.02683 1.00069 1.22795 1.04397 0.99776 0.94287 1.21610 0.97053 0.83283 0.97565 0.93226 0.93057 0.92633 0.93058 0.87726 0.86625 0.90651 0.81522 0.81169 0.88583 0.85866 0.88404 0.90838 0.88207 0.95247 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.06 11.40 21.45 0.24 -56.81 16 2 C 0.01 0.47 5.31 84.66 0.45 0.92 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.54 -30.31 8.56 25.60 0.22 -30.09 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 10 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C -0.11 -4.20 5.11 30.62 0.16 -4.05 16 12 C -0.13 -3.77 6.08 30.68 0.19 -3.58 16 13 C 0.10 2.93 6.35 86.36 0.55 3.48 16 14 N -0.61 -25.30 2.97 -823.15 -2.45 -27.75 16 15 C 0.52 21.48 7.60 86.57 0.66 22.14 16 16 O -0.59 -29.94 12.60 -4.06 -0.05 -29.99 16 17 C -0.23 -6.31 9.35 23.43 0.22 -6.09 16 18 C -0.03 -0.63 9.74 24.52 0.24 -0.39 16 19 C -0.15 -4.64 4.39 -11.54 -0.05 -4.69 16 20 C -0.15 -3.34 10.23 30.60 0.31 -3.03 16 21 C -0.18 -5.07 10.23 30.60 0.31 -4.76 16 22 C 0.13 6.62 5.39 86.36 0.47 7.09 16 23 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.12 2.36 5.30 -2.39 -0.01 2.35 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.17 3.16 5.86 -2.91 -0.02 3.14 16 31 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.10 3.77 6.11 -2.38 -0.01 3.76 16 33 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 4.60 5.17 -2.39 -0.01 4.58 16 Total: -1.00 -75.03 304.54 4.50 -70.53 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.03 Total: 17.85 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 3.69 Total: -21.07 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -2.20 Total: -84.56 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.03 4.50 -70.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.163 kcal (2) G-P(sol) polarization free energy of solvation -75.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds