Wall clock time and date at job start Mon Mar 30 2020 07:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48500 * 109.46690 * 269.99942 * 3 2 1 5 5 H 1.48498 * 109.47129 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.47004 * 149.99818 * 3 2 1 7 7 C 1.37874 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00181 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.51935 * 299.91872 * 9 7 2 11 11 C 1.53041 * 109.49902 * 179.83897 * 9 7 2 12 12 C 1.53066 * 109.65435 * 178.74852 * 11 9 7 13 13 C 1.53187 * 109.29931 * 61.15435 * 12 11 9 14 14 N 1.46923 * 108.89137 * 305.57459 * 13 12 11 15 15 C 1.34779 * 120.63223 * 233.55194 * 14 13 12 16 16 O 1.21612 * 119.99727 * 174.76046 * 15 14 13 17 17 C 1.47099 * 119.99724 * 354.77053 * 15 14 13 18 18 C 1.32999 * 119.99684 * 184.97633 * 17 15 14 19 19 C 1.50699 * 119.99862 * 180.02562 * 18 17 15 20 20 C 1.53002 * 117.49727 * 188.74847 * 19 18 17 21 21 C 1.52997 * 117.50110 * 120.08538 * 19 18 17 22 22 C 1.46934 * 118.73962 * 53.53942 * 14 13 12 23 23 H 0.97007 * 120.00088 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.45785 * 298.70692 * 11 9 7 25 25 H 1.08998 * 109.45757 * 58.67449 * 11 9 7 26 26 H 1.09001 * 109.39232 * 301.27465 * 12 11 9 27 27 H 1.09004 * 109.61961 * 181.16788 * 12 11 9 28 28 H 1.08997 * 109.59140 * 185.71211 * 13 12 11 29 29 H 1.09006 * 109.58742 * 65.42841 * 13 12 11 30 30 H 1.07995 * 120.00069 * 4.97914 * 17 15 14 31 31 H 1.08000 * 120.00242 * 359.97438 * 18 17 15 32 32 H 1.09004 * 115.54813 * 334.41251 * 19 18 17 33 33 H 1.08996 * 117.49715 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.50144 * 145.02032 * 20 19 18 35 35 H 1.08998 * 117.49846 * 214.98052 * 21 19 18 36 36 H 1.09004 * 117.49828 * 359.97438 * 21 19 18 37 37 H 1.08996 * 109.58887 * 66.17623 * 22 14 13 38 38 H 1.08993 * 109.58874 * 186.60562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5582 0.8908 11 6 2.2449 -3.6629 -0.0029 12 6 1.4835 -4.9904 0.0286 13 6 0.6031 -5.0988 -1.2203 14 7 -0.2556 -3.9094 -1.3017 15 6 -1.5923 -4.0344 -1.4208 16 8 -2.3004 -3.0460 -1.3913 17 6 -2.1947 -5.3661 -1.5862 18 6 -3.5017 -5.4825 -1.8028 19 6 -4.1190 -6.8469 -1.9717 20 6 -5.5805 -6.9105 -2.4199 21 6 -5.2061 -7.2585 -0.9769 22 6 0.3705 -2.5812 -1.2504 23 1 -0.4850 0.8401 -0.0004 24 1 2.8543 -3.6173 -0.9055 25 1 2.8888 -3.5930 0.8738 26 1 0.8569 -5.0272 0.9198 27 1 2.1922 -5.8184 0.0471 28 1 -0.0166 -5.9931 -1.1541 29 1 1.2333 -5.1559 -2.1079 30 1 -1.5756 -6.2493 -1.5317 31 1 -4.1209 -4.5993 -1.8568 32 1 -3.4472 -7.6252 -2.3337 33 1 -6.0956 -5.9655 -2.5921 34 1 -5.8704 -7.7309 -3.0763 35 1 -5.2497 -8.3077 -0.6848 36 1 -5.4746 -6.5427 -0.2000 37 1 0.9835 -2.4316 -2.1392 38 1 -0.4027 -1.8143 -1.2040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:00 Heat of formation + Delta-G solvation = -2.844402 kcal Electronic energy + Delta-G solvation = -18116.706417 eV Core-core repulsion = 15345.873065 eV Total energy + Delta-G solvation = -2770.833352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38489 -37.67640 -36.57612 -33.38813 -32.19765 -31.64161 -29.71521 -25.57867 -24.92829 -23.10992 -22.53476 -21.79204 -20.37748 -19.22678 -18.04102 -16.92114 -16.16181 -15.77960 -14.94670 -14.48344 -14.32047 -14.25503 -13.65999 -13.18118 -12.91276 -12.57412 -12.40063 -12.15430 -11.82749 -11.75629 -11.45850 -11.17834 -10.96264 -10.82304 -10.58697 -10.48752 -10.31318 -10.20411 -9.85129 -9.25657 -9.07677 -8.97038 -8.82313 -8.40585 -7.65521 -5.96275 -4.05602 1.62993 3.32587 3.39789 3.42166 3.66715 3.80085 4.00729 4.44880 4.54186 4.72685 4.84111 5.02967 5.19347 5.32410 5.33376 5.45285 5.52460 5.55543 5.70035 5.73138 5.93386 5.97603 6.03149 6.20683 6.34635 6.48494 6.59178 6.64945 6.72646 6.90525 7.01157 7.21551 7.35980 7.68462 7.91476 8.04146 8.33690 8.42541 8.94910 9.00709 9.59939 11.08799 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.005045 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.466983 B = 5548.964166 C = 6220.882136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.108 3.892 14 N -0.602 5.602 15 C 0.534 3.466 16 O -0.542 6.542 17 C -0.201 4.201 18 C -0.055 4.055 19 C -0.134 4.134 20 C -0.174 4.174 21 C -0.169 4.169 22 C 0.112 3.888 23 H 0.263 0.737 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -15.238 -3.617 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.016 4.016 14 N -0.334 5.334 15 C 0.323 3.677 16 O -0.422 6.422 17 C -0.222 4.222 18 C -0.075 4.075 19 C -0.152 4.152 20 C -0.210 4.210 21 C -0.206 4.206 22 C -0.009 4.009 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.504 -14.562 -3.597 15.978 hybrid contribution 0.652 0.784 -0.003 1.019 sum -4.853 -13.778 -3.600 15.045 Atomic orbital electron populations 1.69901 1.05733 1.26787 1.49299 1.25060 0.94869 0.99246 0.94872 0.86594 0.79797 0.83521 0.78098 1.20653 1.21212 1.19937 1.21084 0.92885 0.90162 1.51888 0.92384 1.18969 0.92624 0.92262 0.94102 0.95329 1.21628 0.98567 0.94103 1.00512 1.21959 0.98611 0.99061 0.97630 1.21685 0.93467 0.88071 0.98361 1.48399 1.05372 1.08888 1.70711 1.18477 0.82504 0.89037 0.77720 1.90789 1.60718 1.39648 1.51022 1.22810 0.96316 0.97353 1.05726 1.22974 0.95312 0.96243 0.92988 1.21291 0.91864 0.96535 1.05490 1.23011 0.96835 1.03568 0.97631 1.22986 1.02129 1.02271 0.93184 1.22278 0.98712 0.81455 0.98425 0.92671 0.93229 0.93053 0.92165 0.92215 0.90903 0.92179 0.85829 0.85585 0.87034 0.88335 0.88501 0.88414 0.88324 0.94044 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 11.39 55.43 0.63 -25.53 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.37 8.56 -34.44 -0.29 -14.66 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.00 2.26 -91.65 -0.21 0.79 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.24 5.10 -26.68 -0.14 -2.37 16 12 C -0.13 -2.21 6.09 -26.60 -0.16 -2.37 16 13 C 0.11 1.72 6.31 -3.71 -0.02 1.70 16 14 N -0.60 -12.55 2.97 -174.16 -0.52 -13.07 16 15 C 0.53 11.23 7.63 -12.66 -0.10 11.13 16 16 O -0.54 -13.82 15.65 5.27 0.08 -13.74 16 17 C -0.20 -3.13 8.98 -37.81 -0.34 -3.47 16 18 C -0.06 -0.77 9.24 -36.13 -0.33 -1.11 16 19 C -0.13 -1.39 6.00 -91.77 -0.55 -1.94 16 20 C -0.17 -1.54 10.24 -26.69 -0.27 -1.81 16 21 C -0.17 -1.53 10.24 -26.69 -0.27 -1.80 16 22 C 0.11 2.78 5.41 -3.71 -0.02 2.76 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.55 5.91 -52.49 -0.31 1.24 16 31 H 0.13 1.96 7.50 -52.49 -0.39 1.56 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.12 3.57 5.11 -51.93 -0.27 3.31 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -31.85 309.89 -8.82 -40.68 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.86 Total: 1.98 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.81 Total: -11.48 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.11 Total: -38.59 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.85 -8.82 -40.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.831 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds