Wall clock time and date at job start Mon Mar 30 2020 07:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48500 * 109.46690 * 269.99942 * 3 2 1 5 5 H 1.48498 * 109.47129 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.47004 * 149.99818 * 3 2 1 7 7 C 1.37874 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00181 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.51935 * 299.91872 * 9 7 2 11 11 C 1.53041 * 109.49902 * 179.83897 * 9 7 2 12 12 C 1.53066 * 109.65435 * 178.74852 * 11 9 7 13 13 C 1.53187 * 109.29931 * 61.15435 * 12 11 9 14 14 N 1.46923 * 108.89137 * 305.57459 * 13 12 11 15 15 C 1.34779 * 120.63223 * 233.55194 * 14 13 12 16 16 O 1.21612 * 119.99727 * 174.76046 * 15 14 13 17 17 C 1.47099 * 119.99724 * 354.77053 * 15 14 13 18 18 C 1.32999 * 119.99684 * 184.97633 * 17 15 14 19 19 C 1.50699 * 119.99862 * 180.02562 * 18 17 15 20 20 C 1.53002 * 117.49727 * 188.74847 * 19 18 17 21 21 C 1.52997 * 117.50110 * 120.08538 * 19 18 17 22 22 C 1.46934 * 118.73962 * 53.53942 * 14 13 12 23 23 H 0.97007 * 120.00088 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.45785 * 298.70692 * 11 9 7 25 25 H 1.08998 * 109.45757 * 58.67449 * 11 9 7 26 26 H 1.09001 * 109.39232 * 301.27465 * 12 11 9 27 27 H 1.09004 * 109.61961 * 181.16788 * 12 11 9 28 28 H 1.08997 * 109.59140 * 185.71211 * 13 12 11 29 29 H 1.09006 * 109.58742 * 65.42841 * 13 12 11 30 30 H 1.07995 * 120.00069 * 4.97914 * 17 15 14 31 31 H 1.08000 * 120.00242 * 359.97438 * 18 17 15 32 32 H 1.09004 * 115.54813 * 334.41251 * 19 18 17 33 33 H 1.08996 * 117.49715 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.50144 * 145.02032 * 20 19 18 35 35 H 1.08998 * 117.49846 * 214.98052 * 21 19 18 36 36 H 1.09004 * 117.49828 * 359.97438 * 21 19 18 37 37 H 1.08996 * 109.58887 * 66.17623 * 22 14 13 38 38 H 1.08993 * 109.58874 * 186.60562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5582 0.8908 11 6 2.2449 -3.6629 -0.0029 12 6 1.4835 -4.9904 0.0286 13 6 0.6031 -5.0988 -1.2203 14 7 -0.2556 -3.9094 -1.3017 15 6 -1.5923 -4.0344 -1.4208 16 8 -2.3004 -3.0460 -1.3913 17 6 -2.1947 -5.3661 -1.5862 18 6 -3.5017 -5.4825 -1.8028 19 6 -4.1190 -6.8469 -1.9717 20 6 -5.5805 -6.9105 -2.4199 21 6 -5.2061 -7.2585 -0.9769 22 6 0.3705 -2.5812 -1.2504 23 1 -0.4850 0.8401 -0.0004 24 1 2.8543 -3.6173 -0.9055 25 1 2.8888 -3.5930 0.8738 26 1 0.8569 -5.0272 0.9198 27 1 2.1922 -5.8184 0.0471 28 1 -0.0166 -5.9931 -1.1541 29 1 1.2333 -5.1559 -2.1079 30 1 -1.5756 -6.2493 -1.5317 31 1 -4.1209 -4.5993 -1.8568 32 1 -3.4472 -7.6252 -2.3337 33 1 -6.0956 -5.9655 -2.5921 34 1 -5.8704 -7.7309 -3.0763 35 1 -5.2497 -8.3077 -0.6848 36 1 -5.4746 -6.5427 -0.2000 37 1 0.9835 -2.4316 -2.1392 38 1 -0.4027 -1.8143 -1.2040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:59 Heat of formation + Delta-G solvation = -21.980521 kcal Electronic energy + Delta-G solvation = -18117.536221 eV Core-core repulsion = 15345.873065 eV Total energy + Delta-G solvation = -2771.663156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00079 -38.69089 -38.10709 -35.32881 -33.66093 -33.16394 -31.49809 -27.39505 -26.60430 -24.45812 -23.43170 -23.21361 -21.67176 -20.67191 -19.53464 -18.61896 -17.97812 -17.04354 -16.61492 -16.10546 -15.88433 -15.36969 -15.17635 -14.70062 -14.62164 -14.27905 -13.88866 -13.55105 -13.46460 -12.89796 -12.64969 -12.55261 -12.36543 -12.29890 -12.22823 -12.08162 -11.79042 -11.63628 -11.32473 -11.12013 -10.96240 -10.62434 -10.51105 -10.08754 -9.35497 -8.11956 -6.30215 0.38453 1.39478 1.39995 1.51280 2.25750 2.34252 2.41765 3.05426 3.15848 3.53421 3.90434 3.97225 4.07474 4.11653 4.17910 4.20807 4.36448 4.45539 4.60551 4.76125 4.81138 4.82397 4.86396 5.02325 5.09301 5.14280 5.24493 5.26337 5.27510 5.30696 5.46329 5.48902 5.54088 5.67690 5.88591 5.99246 6.31631 6.71089 6.83446 7.34689 7.40930 8.91410 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.005045 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.466983 B = 5548.964166 C = 6220.882136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.037 3.963 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.101 3.899 14 N -0.607 5.607 15 C 0.520 3.480 16 O -0.607 6.607 17 C -0.213 4.213 18 C -0.035 4.035 19 C -0.144 4.144 20 C -0.168 4.168 21 C -0.162 4.162 22 C 0.123 3.877 23 H 0.259 0.741 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.099 0.901 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 -18.505 -4.229 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.018 3.982 10 H 0.001 0.999 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.020 4.020 14 N -0.337 5.337 15 C 0.312 3.688 16 O -0.491 6.491 17 C -0.233 4.233 18 C -0.055 4.055 19 C -0.162 4.162 20 C -0.205 4.205 21 C -0.199 4.199 22 C 0.000 4.000 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.099 0.901 30 H 0.183 0.817 31 H 0.117 0.883 32 H 0.156 0.844 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.526 -17.881 -4.207 18.918 hybrid contribution 0.279 1.793 0.192 1.825 sum -4.247 -16.088 -4.015 17.116 Atomic orbital electron populations 1.70118 1.07581 1.27249 1.50677 1.25947 0.95546 1.03130 0.94544 0.85519 0.78734 0.78862 0.78347 1.19941 1.21336 1.18517 1.21546 0.93338 0.91522 1.51153 0.91834 1.18910 0.93119 0.94027 0.92130 0.99893 1.21522 0.97633 0.94223 1.00947 1.21936 0.99026 0.98161 0.97390 1.22096 0.93677 0.87237 0.99004 1.48449 1.06114 1.08870 1.70298 1.19489 0.82272 0.90696 0.76323 1.90749 1.62077 1.42287 1.53949 1.22647 0.97067 0.95137 1.08476 1.23183 0.94703 0.97683 0.89958 1.21352 0.92917 0.94625 1.07266 1.23134 0.95244 1.04076 0.98045 1.23089 1.00545 1.03377 0.92922 1.21694 0.97172 0.83134 0.97957 0.93183 0.92347 0.92974 0.93302 0.87406 0.86777 0.90107 0.81731 0.88330 0.84431 0.89238 0.86075 0.85913 0.89545 0.94523 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.77 11.39 21.45 0.24 -57.52 16 2 C 0.01 0.43 5.30 84.65 0.45 0.88 16 3 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.44 8.56 25.60 0.22 -30.22 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.04 1.96 2.26 -11.46 -0.03 1.93 16 10 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 11 C -0.11 -4.17 5.10 30.63 0.16 -4.02 16 12 C -0.13 -3.81 6.09 30.68 0.19 -3.63 16 13 C 0.10 2.93 6.31 86.36 0.55 3.48 16 14 N -0.61 -25.56 2.97 -823.18 -2.45 -28.01 16 15 C 0.52 22.52 7.63 86.57 0.66 23.18 16 16 O -0.61 -33.18 15.65 -4.07 -0.06 -33.25 16 17 C -0.21 -6.31 8.98 23.43 0.21 -6.10 16 18 C -0.04 -0.95 9.24 24.52 0.23 -0.72 16 19 C -0.14 -2.53 6.00 -11.54 -0.07 -2.60 16 20 C -0.17 -2.51 10.24 30.62 0.31 -2.19 16 21 C -0.16 -2.46 10.24 30.62 0.31 -2.15 16 22 C 0.12 6.43 5.41 86.36 0.47 6.90 16 23 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.11 2.39 5.37 -2.39 -0.01 2.38 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.17 3.41 5.91 -2.91 -0.02 3.39 16 31 H 0.10 3.20 7.50 -2.91 -0.02 3.18 16 32 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 4.65 5.11 -2.39 -0.01 4.64 16 Total: -1.00 -76.65 309.89 4.44 -72.21 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.03 Total: 14.55 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.65 Total: -15.25 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.20 Total: -85.53 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.06 Total: -33.25 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.65 4.44 -72.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.225 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds