Wall clock time and date at job start Mon Mar 30 2020 07:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46675 * 269.99649 * 3 2 1 5 5 H 1.48502 * 109.47233 * 29.99670 * 3 2 1 6 6 H 1.48498 * 109.46897 * 150.00129 * 3 2 1 7 7 C 1.37879 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99442 * 180.02562 * 7 2 1 10 10 C 1.53503 * 114.20491 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98596 * 139.65156 * 10 9 7 12 12 C 1.34772 * 136.05397 * 152.84244 * 11 10 9 13 13 O 1.21613 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.47105 * 120.00193 * 179.97438 * 12 11 10 15 15 C 1.32988 * 120.00328 * 180.02562 * 14 12 11 16 16 C 1.50703 * 119.99928 * 180.02562 * 15 14 12 17 17 C 1.54266 * 110.02911 * 237.90757 * 16 15 14 18 18 C 1.54968 * 104.16038 * 217.13628 * 17 16 15 19 19 C 1.54883 * 102.77559 * 37.88922 * 18 17 16 20 20 C 1.53876 * 110.03350 * 120.69324 * 16 15 14 21 21 C 1.47060 * 87.88602 * 332.87796 * 11 10 9 22 22 H 0.97001 * 119.99464 * 0.02562 * 1 2 3 23 23 H 1.08995 * 113.41894 * 46.80202 * 9 7 2 24 24 H 1.09000 * 113.46355 * 24.87108 * 10 9 7 25 25 H 1.09003 * 113.46309 * 254.43554 * 10 9 7 26 26 H 1.08000 * 119.99502 * 0.02562 * 14 12 11 27 27 H 1.08000 * 120.00170 * 0.02562 * 15 14 12 28 28 H 1.09000 * 110.01442 * 359.29924 * 16 15 14 29 29 H 1.08997 * 110.49036 * 335.78660 * 17 16 15 30 30 H 1.09000 * 110.48749 * 98.42824 * 17 16 15 31 31 H 1.09001 * 110.71575 * 279.57836 * 18 17 16 32 32 H 1.08994 * 110.76567 * 156.22705 * 18 17 16 33 33 H 1.09000 * 110.48767 * 203.40498 * 19 18 17 34 34 H 1.09006 * 110.60040 * 80.81744 * 19 18 17 35 35 H 1.09000 * 110.02681 * 238.56953 * 20 16 15 36 36 H 1.09003 * 110.02760 * 359.97438 * 20 16 15 37 37 H 1.09007 * 113.46761 * 141.90148 * 21 11 10 38 38 H 1.09003 * 113.46830 * 272.34116 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.1409 -2.5942 0.0010 11 7 5.1417 -2.0875 -0.9500 12 6 6.4153 -2.3894 -1.2710 13 8 6.9897 -3.2934 -0.6950 14 6 7.1105 -1.6261 -2.3189 15 6 8.3671 -1.9243 -2.6361 16 6 9.0794 -1.1419 -3.7092 17 6 9.5572 -2.0920 -4.8267 18 6 10.9285 -1.5122 -5.2566 19 6 11.5397 -1.0454 -3.9122 20 6 10.3392 -0.4764 -3.1281 21 6 4.1414 -1.1061 -1.3959 22 1 -0.4849 0.8401 -0.0004 23 1 3.9444 -0.5093 0.7302 24 1 3.4916 -3.3618 -0.4199 25 1 4.5632 -2.8802 0.9644 26 1 6.6003 -0.8235 -2.8307 27 1 8.8772 -2.7271 -2.1246 28 1 8.4136 -0.3842 -4.1226 29 1 9.6752 -3.1049 -4.4418 30 1 8.8580 -2.0797 -5.6628 31 1 10.7952 -0.6686 -5.9340 32 1 11.5474 -2.2832 -5.7153 33 1 12.2868 -0.2700 -4.0816 34 1 11.9796 -1.8876 -3.3780 35 1 10.2852 0.6043 -3.2603 36 1 10.4351 -0.7189 -2.0698 37 1 4.5642 -0.1267 -1.6205 38 1 3.4923 -1.4775 -2.1889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855470777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:01 Heat of formation + Delta-G solvation = -2.916983 kcal Electronic energy + Delta-G solvation = -17532.535420 eV Core-core repulsion = 14761.698921 eV Total energy + Delta-G solvation = -2770.836499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66386 -38.59337 -37.24476 -33.23449 -32.65484 -29.87984 -28.91085 -28.14887 -25.48806 -25.09382 -22.17363 -20.90751 -20.04624 -19.47977 -18.24211 -17.22646 -16.67133 -16.10342 -15.33404 -15.06392 -14.93050 -14.06645 -13.67131 -13.58075 -13.37125 -12.97465 -12.51714 -12.04482 -11.90041 -11.77443 -11.71985 -11.38401 -11.30555 -11.29219 -10.94785 -10.90173 -10.73241 -10.68964 -10.01188 -9.80934 -9.41186 -9.28358 -9.16422 -8.69036 -8.01850 -6.22163 -4.25141 1.55551 3.19200 3.28433 3.30093 3.46272 3.69420 4.29202 4.35747 4.44132 4.45778 4.88683 5.00746 5.09747 5.20603 5.30692 5.35461 5.39284 5.43295 5.44803 5.65268 5.67479 5.72580 5.82484 5.94920 5.97634 6.06535 6.07800 6.12037 6.22485 6.26539 6.40194 6.40752 6.52215 6.71202 7.16683 7.53637 8.31234 8.39718 8.65892 8.81247 9.38416 10.89833 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.004247 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.613628 B = 6591.380643 C = 7063.223222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.080 0.920 9 C -0.013 4.013 10 C 0.113 3.887 11 N -0.639 5.639 12 C 0.562 3.438 13 O -0.568 6.568 14 C -0.198 4.198 15 C -0.071 4.071 16 C -0.071 4.071 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.118 4.118 21 C 0.085 3.915 22 H 0.267 0.733 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.462 0.651 -9.362 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.549 4.549 8 H 0.098 0.902 9 C -0.033 4.033 10 C -0.009 4.009 11 N -0.372 5.372 12 C 0.354 3.646 13 O -0.450 6.450 14 C -0.219 4.219 15 C -0.091 4.091 16 C -0.089 4.089 17 C -0.154 4.154 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.038 4.038 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.772 0.257 -9.105 20.865 hybrid contribution 0.192 1.000 -0.131 1.027 sum 18.963 1.257 -9.237 21.130 Atomic orbital electron populations 1.69895 1.06334 1.27315 1.49386 1.25005 0.94675 0.99126 0.93820 0.86876 0.80548 0.83638 0.78854 1.19948 1.21143 1.18704 1.20775 0.87457 0.94918 1.51710 0.90153 1.20924 0.96998 0.93097 0.92242 1.23116 0.86570 0.99439 0.91730 1.49835 1.09970 1.37141 1.40220 1.18109 0.80459 0.83188 0.82836 1.90721 1.66428 1.32667 1.55147 1.22670 0.96484 1.02437 1.00318 1.23660 0.94224 0.96866 0.94365 1.21041 0.96844 0.96957 0.94061 1.22430 0.96626 0.99087 0.97305 1.22520 0.96194 1.00390 0.97166 1.22379 0.97354 1.00540 0.96006 1.22186 0.93277 0.99887 1.00183 1.23872 0.87089 0.90580 1.02253 0.92337 0.91526 0.90143 0.91988 0.86044 0.85724 0.90195 0.91079 0.91339 0.91473 0.91534 0.91717 0.91530 0.91460 0.91266 0.92716 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 19.97 27.43 -169.99 -4.66 15.31 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -5.78 6.21 56.52 0.35 -5.43 16 7 C -0.51 -13.28 9.38 -34.44 -0.32 -13.60 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C -0.01 -0.29 3.00 -91.25 -0.27 -0.56 16 10 C 0.11 2.33 8.18 -8.51 -0.07 2.26 16 11 N -0.64 -12.80 3.69 -186.63 -0.69 -13.48 16 12 C 0.56 11.02 8.01 -12.67 -0.10 10.92 16 13 O -0.57 -12.70 17.00 5.27 0.09 -12.61 16 14 C -0.20 -3.04 9.48 -37.81 -0.36 -3.40 16 15 C -0.07 -0.93 7.98 -36.13 -0.29 -1.22 16 16 C -0.07 -0.71 3.24 -90.65 -0.29 -1.00 16 17 C -0.12 -1.04 6.36 -25.03 -0.16 -1.19 16 18 C -0.13 -0.93 6.91 -24.70 -0.17 -1.10 16 19 C -0.13 -0.97 6.83 -25.08 -0.17 -1.14 16 20 C -0.12 -1.06 6.45 -25.61 -0.17 -1.23 16 21 C 0.08 1.67 7.45 -8.51 -0.06 1.61 16 22 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.07 1.50 6.50 -51.93 -0.34 1.17 16 24 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.12 1.67 7.80 -52.49 -0.41 1.26 16 27 H 0.12 1.75 7.49 -52.49 -0.39 1.36 16 28 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 29 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -29.80 314.08 -8.47 -38.28 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.18 Total: 0.41 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.54 Total: -7.68 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.09 Total: -38.43 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.66 Total: 15.31 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.80 -8.47 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855470777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.359 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds