Wall clock time and date at job start Mon Mar 30 2020 07:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46675 * 269.99649 * 3 2 1 5 5 H 1.48502 * 109.47233 * 29.99670 * 3 2 1 6 6 H 1.48498 * 109.46897 * 150.00129 * 3 2 1 7 7 C 1.37879 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99442 * 180.02562 * 7 2 1 10 10 C 1.53503 * 114.20491 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98596 * 139.65156 * 10 9 7 12 12 C 1.34772 * 136.05397 * 152.84244 * 11 10 9 13 13 O 1.21613 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.47105 * 120.00193 * 179.97438 * 12 11 10 15 15 C 1.32988 * 120.00328 * 180.02562 * 14 12 11 16 16 C 1.50703 * 119.99928 * 180.02562 * 15 14 12 17 17 C 1.54266 * 110.02911 * 237.90757 * 16 15 14 18 18 C 1.54968 * 104.16038 * 217.13628 * 17 16 15 19 19 C 1.54883 * 102.77559 * 37.88922 * 18 17 16 20 20 C 1.53876 * 110.03350 * 120.69324 * 16 15 14 21 21 C 1.47060 * 87.88602 * 332.87796 * 11 10 9 22 22 H 0.97001 * 119.99464 * 0.02562 * 1 2 3 23 23 H 1.08995 * 113.41894 * 46.80202 * 9 7 2 24 24 H 1.09000 * 113.46355 * 24.87108 * 10 9 7 25 25 H 1.09003 * 113.46309 * 254.43554 * 10 9 7 26 26 H 1.08000 * 119.99502 * 0.02562 * 14 12 11 27 27 H 1.08000 * 120.00170 * 0.02562 * 15 14 12 28 28 H 1.09000 * 110.01442 * 359.29924 * 16 15 14 29 29 H 1.08997 * 110.49036 * 335.78660 * 17 16 15 30 30 H 1.09000 * 110.48749 * 98.42824 * 17 16 15 31 31 H 1.09001 * 110.71575 * 279.57836 * 18 17 16 32 32 H 1.08994 * 110.76567 * 156.22705 * 18 17 16 33 33 H 1.09000 * 110.48767 * 203.40498 * 19 18 17 34 34 H 1.09006 * 110.60040 * 80.81744 * 19 18 17 35 35 H 1.09000 * 110.02681 * 238.56953 * 20 16 15 36 36 H 1.09003 * 110.02760 * 359.97438 * 20 16 15 37 37 H 1.09007 * 113.46761 * 141.90148 * 21 11 10 38 38 H 1.09003 * 113.46830 * 272.34116 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.1409 -2.5942 0.0010 11 7 5.1417 -2.0875 -0.9500 12 6 6.4153 -2.3894 -1.2710 13 8 6.9897 -3.2934 -0.6950 14 6 7.1105 -1.6261 -2.3189 15 6 8.3671 -1.9243 -2.6361 16 6 9.0794 -1.1419 -3.7092 17 6 9.5572 -2.0920 -4.8267 18 6 10.9285 -1.5122 -5.2566 19 6 11.5397 -1.0454 -3.9122 20 6 10.3392 -0.4764 -3.1281 21 6 4.1414 -1.1061 -1.3959 22 1 -0.4849 0.8401 -0.0004 23 1 3.9444 -0.5093 0.7302 24 1 3.4916 -3.3618 -0.4199 25 1 4.5632 -2.8802 0.9644 26 1 6.6003 -0.8235 -2.8307 27 1 8.8772 -2.7271 -2.1246 28 1 8.4136 -0.3842 -4.1226 29 1 9.6752 -3.1049 -4.4418 30 1 8.8580 -2.0797 -5.6628 31 1 10.7952 -0.6686 -5.9340 32 1 11.5474 -2.2832 -5.7153 33 1 12.2868 -0.2700 -4.0816 34 1 11.9796 -1.8876 -3.3780 35 1 10.2852 0.6043 -3.2603 36 1 10.4351 -0.7189 -2.0698 37 1 4.5642 -0.1267 -1.6205 38 1 3.4923 -1.4775 -2.1889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855470777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:00 Heat of formation + Delta-G solvation = -19.677232 kcal Electronic energy + Delta-G solvation = -17533.262199 eV Core-core repulsion = 14761.698921 eV Total energy + Delta-G solvation = -2771.563278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23775 -39.48685 -38.73305 -34.68005 -34.29342 -31.52511 -29.56049 -29.19606 -27.16460 -26.77870 -23.45942 -21.53516 -21.50816 -20.45896 -19.72518 -19.14952 -18.12345 -17.18530 -16.71750 -16.36976 -15.94498 -15.79557 -15.10987 -14.77215 -14.51396 -14.22349 -14.13714 -13.55113 -13.43050 -13.03230 -12.74459 -12.67350 -12.50772 -12.20482 -11.96047 -11.90555 -11.80755 -11.56705 -11.52441 -11.40430 -11.26801 -10.87717 -10.65398 -10.40752 -9.62519 -8.27842 -6.36160 0.34534 1.41201 1.44860 1.53617 1.94786 2.26622 2.38423 3.02051 3.41293 3.69036 3.77696 3.89384 4.02059 4.10868 4.27144 4.39916 4.45723 4.55822 4.57114 4.62947 4.64106 4.67631 4.70350 4.77011 4.84454 4.85071 4.98832 5.09539 5.23358 5.28224 5.33894 5.36600 5.46549 5.51460 5.53251 5.59931 6.27862 6.69903 6.82476 7.11088 7.31435 8.87690 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.004247 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.613628 B = 6591.380643 C = 7063.223222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.022 3.978 3 Si 0.938 3.062 4 H -0.255 1.255 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.513 4.513 8 H 0.042 0.958 9 C -0.018 4.018 10 C 0.112 3.888 11 N -0.642 5.642 12 C 0.557 3.443 13 O -0.604 6.604 14 C -0.221 4.221 15 C -0.040 4.040 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.118 4.118 21 C 0.098 3.902 22 H 0.269 0.731 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.143 0.857 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.031 2.392 -10.965 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.179 1.179 5 H -0.216 1.216 6 H -0.170 1.170 7 C -0.551 4.551 8 H 0.060 0.940 9 C -0.038 4.038 10 C -0.011 4.011 11 N -0.374 5.374 12 C 0.352 3.648 13 O -0.489 6.489 14 C -0.242 4.242 15 C -0.060 4.060 16 C -0.089 4.089 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.024 4.024 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.161 0.839 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.361 1.989 -10.723 23.984 hybrid contribution -0.572 0.319 0.391 0.762 sum 20.789 2.308 -10.332 23.329 Atomic orbital electron populations 1.70042 1.08357 1.28407 1.51450 1.25858 0.95339 1.03067 0.93427 0.85845 0.79560 0.78505 0.79931 1.17921 1.21569 1.16959 1.20915 0.89583 0.93543 1.51073 0.94001 1.20813 0.94453 0.94243 0.94253 1.23025 0.86987 0.98716 0.92336 1.49827 1.10222 1.37209 1.40107 1.18833 0.79965 0.82953 0.83089 1.90697 1.67013 1.34461 1.56730 1.22560 0.97220 1.03790 1.00584 1.23901 0.93288 0.95395 0.93456 1.21146 0.97239 0.97118 0.93368 1.22455 0.97752 0.98441 0.96966 1.22519 0.95224 1.00909 0.97160 1.22395 0.97121 1.00825 0.95894 1.22207 0.93176 1.00539 0.99680 1.23644 0.86731 0.91810 1.00238 0.92243 0.91292 0.90373 0.91842 0.83928 0.87048 0.89093 0.91855 0.90685 0.90520 0.90667 0.90426 0.91816 0.90333 0.92324 0.90107 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 13.96 21.45 0.30 -55.28 16 2 C 0.02 1.18 5.47 84.65 0.46 1.64 16 3 Si 0.94 40.13 27.43 68.60 1.88 42.01 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.25 -9.79 6.21 99.48 0.62 -9.17 16 7 C -0.51 -27.10 9.38 25.60 0.24 -26.86 16 8 H 0.04 2.46 8.06 -2.92 -0.02 2.44 16 9 C -0.02 -0.79 3.00 -11.20 -0.03 -0.82 16 10 C 0.11 4.60 8.18 83.18 0.68 5.28 16 11 N -0.64 -24.92 3.69 -862.64 -3.18 -28.10 16 12 C 0.56 21.26 8.01 86.57 0.69 21.96 16 13 O -0.60 -26.97 17.00 -4.07 -0.07 -27.03 16 14 C -0.22 -6.31 9.48 23.43 0.22 -6.08 16 15 C -0.04 -0.98 7.98 24.52 0.20 -0.78 16 16 C -0.07 -1.21 3.24 -10.81 -0.04 -1.24 16 17 C -0.12 -1.78 6.36 31.70 0.20 -1.58 16 18 C -0.12 -1.42 6.91 31.91 0.22 -1.19 16 19 C -0.12 -1.56 6.83 31.67 0.22 -1.35 16 20 C -0.12 -1.80 6.45 31.32 0.20 -1.60 16 21 C 0.10 3.67 7.45 83.18 0.62 4.29 16 22 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.07 2.99 6.50 -2.39 -0.02 2.97 16 24 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 25 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.14 3.44 7.80 -2.91 -0.02 3.42 16 27 H 0.11 3.02 7.49 -2.91 -0.02 3.00 16 28 H 0.09 1.43 7.84 -2.39 -0.02 1.41 16 29 H 0.06 1.05 7.85 -2.39 -0.02 1.03 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.02 7.67 -2.39 -0.02 1.00 16 37 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 38 H 0.09 3.26 8.10 -2.39 -0.02 3.24 16 Total: -1.00 -64.90 314.08 3.74 -61.15 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.93 Total: 15.61 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 3.89 Total: -8.35 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.88 Total: -83.38 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.07 Total: -27.03 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.01 kcal Total: -64.90 3.74 -61.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855470777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.474 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds