Wall clock time and date at job start Mon Mar 30 2020 07:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48494 * 109.47453 * 270.00588 * 3 2 1 5 5 H 1.48508 * 109.47100 * 30.00442 * 3 2 1 6 6 H 1.48501 * 109.47229 * 149.99935 * 3 2 1 7 7 C 1.37877 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99885 * 0.27369 * 7 2 1 9 9 C 1.50698 * 119.99711 * 179.97438 * 7 2 1 10 10 C 1.53948 * 113.74178 * 276.67366 * 9 7 2 11 11 N 1.47584 * 86.11831 * 222.04730 * 10 9 7 12 12 C 1.34772 * 134.49574 * 204.63904 * 11 10 9 13 13 O 1.21610 * 120.00041 * 180.02562 * 12 11 10 14 14 C 1.47099 * 119.99763 * 0.02562 * 12 11 10 15 15 C 1.32999 * 120.00164 * 173.18019 * 14 12 11 16 16 C 1.50699 * 119.99398 * 346.22196 * 15 14 12 17 17 C 1.54267 * 110.03108 * 227.41029 * 16 15 14 18 18 C 1.54892 * 104.19754 * 217.11142 * 17 16 15 19 19 C 1.54892 * 102.75049 * 37.93924 * 18 17 16 20 20 C 1.53876 * 110.03174 * 110.24648 * 16 15 14 21 21 C 1.47584 * 91.01136 * 24.63897 * 11 10 9 22 22 H 0.97004 * 119.99869 * 359.97438 * 1 2 3 23 23 H 1.09004 * 112.94528 * 48.40914 * 9 7 2 24 24 H 1.08990 * 113.76979 * 336.35262 * 10 9 7 25 25 H 1.09005 * 113.76637 * 107.74781 * 10 9 7 26 26 H 1.08004 * 120.00216 * 353.17637 * 14 12 11 27 27 H 1.07996 * 120.00370 * 166.22731 * 15 14 12 28 28 H 1.09003 * 110.02344 * 348.85372 * 16 15 14 29 29 H 1.08998 * 110.48451 * 335.78435 * 17 16 15 30 30 H 1.08993 * 110.48727 * 98.42819 * 17 16 15 31 31 H 1.09000 * 110.75227 * 279.62683 * 18 17 16 32 32 H 1.08991 * 110.75758 * 156.25861 * 18 17 16 33 33 H 1.08995 * 110.48793 * 203.38646 * 19 18 17 34 34 H 1.08998 * 110.59953 * 80.79272 * 19 18 17 35 35 H 1.08998 * 110.03160 * 238.56568 * 20 16 15 36 36 H 1.09005 * 110.03039 * 359.94718 * 20 16 15 37 37 H 1.08998 * 113.77039 * 221.04948 * 21 11 10 38 38 H 1.09012 * 113.76521 * 89.66061 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0054 9 6 3.5115 -1.1940 -0.0011 10 6 4.1308 -1.0299 -1.4010 11 7 5.0916 -2.0713 -0.9881 12 6 6.3433 -2.4032 -1.3618 13 8 6.9080 -3.3402 -0.8307 14 6 7.0261 -1.6321 -2.4119 15 6 8.3055 -1.8704 -2.6865 16 6 9.1394 -2.6918 -1.7374 17 6 10.4856 -1.9870 -1.4712 18 6 11.5096 -3.1456 -1.3807 19 6 11.0117 -4.1278 -2.4699 20 6 9.4739 -4.0530 -2.3723 21 6 4.1313 -2.6032 -0.0017 22 1 -0.4850 0.8401 0.0004 23 1 3.9367 -0.5279 0.7496 24 1 3.4710 -1.3377 -2.2120 25 1 4.5859 -0.0537 -1.5683 26 1 6.4887 -0.8724 -2.9601 27 1 8.7467 -1.4753 -3.5896 28 1 8.6024 -2.8389 -0.8002 29 1 10.7364 -1.3198 -2.2958 30 1 10.4486 -1.4362 -0.5314 31 1 11.4786 -3.6124 -0.3962 32 1 12.5146 -2.7916 -1.6100 33 1 11.3585 -5.1393 -2.2588 34 1 11.3473 -3.8086 -3.4566 35 1 9.1000 -4.8605 -1.7429 36 1 9.0322 -4.1198 -3.3666 37 1 4.5869 -2.8832 0.9481 38 1 3.4716 -3.3732 -0.4018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855470778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:04 Heat of formation + Delta-G solvation = -8.567286 kcal Electronic energy + Delta-G solvation = -17926.872057 eV Core-core repulsion = 15155.790543 eV Total energy + Delta-G solvation = -2771.081515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21969 -39.60758 -38.28625 -34.65660 -34.12031 -31.47515 -29.53216 -29.01056 -27.17373 -26.84327 -23.39898 -21.54817 -21.44920 -20.77751 -19.48322 -19.10349 -18.02580 -16.83467 -16.74416 -16.53579 -15.82407 -15.39316 -15.02604 -14.67671 -14.64716 -14.21198 -13.99229 -13.65686 -13.49702 -13.38586 -12.74633 -12.57657 -12.46371 -11.95513 -11.91380 -11.85620 -11.74927 -11.61857 -11.49144 -11.41990 -11.29050 -10.72693 -10.44924 -10.07445 -9.48501 -8.27685 -6.35721 0.41158 1.40713 1.44279 1.53181 2.01048 2.32062 2.38377 3.03542 3.60512 3.75517 3.83538 3.84195 4.05770 4.26084 4.33012 4.44505 4.53078 4.55610 4.58435 4.68659 4.71202 4.75721 4.78259 4.79702 4.86275 4.96028 5.02999 5.11048 5.17923 5.34987 5.37626 5.39147 5.51224 5.52418 5.60626 5.77987 6.27642 6.69628 6.90253 7.22106 7.31799 8.88091 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047344 B = 0.004406 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.270279 B = 6353.333819 C = 6628.507918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.021 3.979 3 Si 0.938 3.062 4 H -0.254 1.254 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.516 4.516 8 H 0.039 0.961 9 C -0.018 4.018 10 C 0.100 3.900 11 N -0.640 5.640 12 C 0.547 3.453 13 O -0.580 6.580 14 C -0.235 4.235 15 C -0.036 4.036 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.103 4.103 21 C 0.116 3.884 22 H 0.268 0.732 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.159 0.841 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.490 -0.555 -7.139 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.179 1.179 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.554 4.554 8 H 0.058 0.942 9 C -0.037 4.037 10 C -0.023 4.023 11 N -0.373 5.373 12 C 0.341 3.659 13 O -0.464 6.464 14 C -0.255 4.255 15 C -0.055 4.055 16 C -0.124 4.124 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.141 4.141 21 C -0.006 4.006 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.161 0.839 27 H 0.176 0.824 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.792 -0.983 -6.925 22.887 hybrid contribution -0.769 0.452 0.199 0.914 sum 21.023 -0.531 -6.727 22.079 Atomic orbital electron populations 1.70047 1.08395 1.28368 1.51614 1.25868 0.95338 1.03102 0.93488 0.85852 0.79585 0.78473 0.79967 1.17857 1.21632 1.16868 1.21011 0.89933 0.93446 1.51022 0.94231 1.20991 0.94376 0.94169 0.94184 1.23766 0.87665 0.90705 1.00120 1.50301 1.12654 1.34346 1.39951 1.19028 0.80411 0.84038 0.82376 1.90602 1.65077 1.32341 1.58424 1.22647 0.97618 1.04001 1.01270 1.24085 0.92969 0.91879 0.96570 1.21617 0.96235 0.94772 0.99762 1.22452 0.93015 0.97871 1.01820 1.22494 0.98920 0.95807 0.98770 1.22387 0.93808 0.99768 0.99748 1.21957 0.96703 0.95643 0.99812 1.23138 0.87725 0.98219 0.91516 0.92295 0.91640 0.89674 0.89823 0.83886 0.82372 0.89440 0.89843 0.92380 0.92431 0.89752 0.91451 0.90188 0.93955 0.92182 0.91282 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.99 13.96 21.45 0.30 -55.69 16 2 C 0.02 1.11 5.47 84.65 0.46 1.57 16 3 Si 0.94 40.22 27.17 68.60 1.86 42.08 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.25 -9.74 6.25 99.48 0.62 -9.12 16 7 C -0.52 -27.42 9.32 25.60 0.24 -27.18 16 8 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 9 C -0.02 -0.77 2.90 -10.88 -0.03 -0.80 16 10 C 0.10 3.72 7.34 86.48 0.63 4.36 16 11 N -0.64 -24.42 3.61 -841.02 -3.03 -27.45 16 12 C 0.55 20.01 7.81 86.57 0.68 20.68 16 13 O -0.58 -23.94 13.88 -4.06 -0.06 -24.00 16 14 C -0.23 -6.45 9.79 23.43 0.23 -6.22 16 15 C -0.04 -0.80 8.46 24.52 0.21 -0.59 16 16 C -0.11 -2.63 2.39 -10.82 -0.03 -2.66 16 17 C -0.11 -2.15 6.35 31.67 0.20 -1.95 16 18 C -0.12 -2.04 6.91 31.89 0.22 -1.82 16 19 C -0.12 -2.04 6.83 31.67 0.22 -1.82 16 20 C -0.10 -2.41 6.33 31.32 0.20 -2.22 16 21 C 0.12 4.74 8.39 86.48 0.73 5.47 16 22 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 23 H 0.07 2.83 6.57 -2.38 -0.02 2.82 16 24 H 0.09 3.19 8.09 -2.39 -0.02 3.17 16 25 H 0.08 2.71 8.09 -2.38 -0.02 2.69 16 26 H 0.14 3.32 7.92 -2.91 -0.02 3.30 16 27 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.09 2.92 4.96 -8.88 -0.04 2.88 16 29 H 0.08 1.24 7.85 -2.39 -0.02 1.22 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.34 7.67 -2.38 -0.02 1.32 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.07 3.06 8.09 -2.38 -0.02 3.04 16 Total: -1.00 -64.20 308.01 3.93 -60.27 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.90 Total: 17.97 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 3.95 Total: -13.18 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.73 Total: -83.14 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.00 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.86 Total: 42.08 kcal Total: -64.20 3.93 -60.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855470778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.704 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds