Wall clock time and date at job start Mon Mar 30 2020 07:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99617 * 2 1 4 4 H 1.48495 * 109.47174 * 269.99885 * 3 2 1 5 5 H 1.48495 * 109.47380 * 30.00671 * 3 2 1 6 6 H 1.48507 * 109.46660 * 150.00464 * 3 2 1 7 7 C 1.37880 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99931 * 179.97438 * 7 2 1 10 10 C 1.53945 * 113.74274 * 276.67977 * 9 7 2 11 11 N 1.47583 * 86.11506 * 222.04691 * 10 9 7 12 12 C 1.34772 * 134.49366 * 204.64284 * 11 10 9 13 13 O 1.21613 * 120.00223 * 179.97438 * 12 11 10 14 14 C 1.47104 * 120.00091 * 359.97438 * 12 11 10 15 15 C 1.32996 * 119.99938 * 186.98854 * 14 12 11 16 16 C 1.51270 * 120.85146 * 12.17133 * 15 14 12 17 17 C 1.53662 * 108.31088 * 128.61655 * 16 15 14 18 18 C 1.52961 * 109.32420 * 54.85986 * 17 16 15 19 19 C 1.52955 * 109.81787 * 296.27066 * 18 17 16 20 20 C 1.51276 * 120.84616 * 192.44814 * 15 14 12 21 21 C 1.47576 * 91.01570 * 24.63607 * 11 10 9 22 22 H 0.96997 * 120.00574 * 359.97438 * 1 2 3 23 23 H 1.09004 * 112.93938 * 48.41096 * 9 7 2 24 24 H 1.08996 * 113.76801 * 336.33804 * 10 9 7 25 25 H 1.08998 * 113.77212 * 107.74587 * 10 9 7 26 26 H 1.08004 * 119.99869 * 6.98579 * 14 12 11 27 27 H 1.09000 * 109.62009 * 248.38667 * 16 15 14 28 28 H 1.08999 * 109.62195 * 8.95493 * 16 15 14 29 29 H 1.09001 * 109.62508 * 294.84001 * 17 16 15 30 30 H 1.09000 * 109.41366 * 174.75146 * 17 16 15 31 31 H 1.09000 * 109.41436 * 176.16655 * 18 17 16 32 32 H 1.08995 * 109.41391 * 56.37746 * 18 17 16 33 33 H 1.08998 * 109.48520 * 303.61923 * 19 18 17 34 34 H 1.09000 * 109.48740 * 183.57402 * 19 18 17 35 35 H 1.09001 * 109.62450 * 351.03948 * 20 15 14 36 36 H 1.08992 * 109.61996 * 111.61291 * 20 15 14 37 37 H 1.09006 * 113.77587 * 221.06115 * 21 11 10 38 38 H 1.09004 * 113.76944 * 89.65998 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1309 -1.0298 -1.4009 11 7 5.0917 -2.0712 -0.9881 12 6 6.3433 -2.4030 -1.3616 13 8 6.9085 -3.3395 -0.8300 14 6 7.0259 -1.6325 -2.4125 15 6 8.2023 -2.0415 -2.8791 16 6 8.7288 -3.4216 -2.5529 17 6 9.1325 -4.1074 -3.8674 18 6 10.1231 -3.2170 -4.6195 19 6 9.4452 -1.9030 -5.0113 20 6 9.0507 -1.1362 -3.7446 21 6 4.1315 -2.6031 -0.0017 22 1 -0.4851 0.8400 0.0004 23 1 3.9367 -0.5279 0.7497 24 1 3.4711 -1.3377 -2.2120 25 1 4.5860 -0.0536 -1.5682 26 1 6.5718 -0.7346 -2.8051 27 1 9.5969 -3.3370 -1.8991 28 1 7.9503 -4.0031 -2.0592 29 1 8.2477 -4.2679 -4.4834 30 1 9.6009 -5.0666 -3.6467 31 1 10.4626 -3.7315 -5.5184 32 1 10.9793 -3.0060 -3.9789 33 1 8.5531 -2.1156 -5.6002 34 1 10.1352 -1.2997 -5.6012 35 1 8.4790 -0.2490 -4.0168 36 1 9.9479 -0.8440 -3.1991 37 1 4.5870 -2.8831 0.9482 38 1 3.4717 -3.3731 -0.4018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855475273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:36 Heat of formation + Delta-G solvation = 0.454623 kcal Electronic energy + Delta-G solvation = -18012.397543 eV Core-core repulsion = 15241.707248 eV Total energy + Delta-G solvation = -2770.690295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78278 -38.41152 -36.89875 -32.68299 -32.57038 -31.02161 -29.76734 -26.97237 -25.32717 -24.84406 -22.99158 -21.47514 -20.17364 -18.89364 -17.85062 -17.19491 -16.56871 -15.55175 -15.09135 -14.89584 -14.42668 -14.14667 -13.80359 -13.67734 -13.05835 -12.99874 -12.65605 -12.48092 -12.28382 -11.83632 -11.81930 -11.68182 -11.17083 -11.03845 -10.93049 -10.82148 -10.50529 -10.36370 -10.04389 -9.74380 -9.32965 -9.02690 -8.76873 -8.63752 -7.95314 -6.21051 -4.23781 1.55950 3.19181 3.28524 3.30249 3.48319 3.69840 4.29882 4.60960 4.63583 4.79114 4.92698 5.03592 5.08851 5.21658 5.32528 5.41826 5.50910 5.54775 5.74894 5.75254 5.84661 5.90615 5.92794 5.99491 5.99690 6.10835 6.19291 6.23882 6.28869 6.37331 6.38641 6.59584 6.64896 6.87036 7.18555 7.54568 8.31285 8.43072 8.70009 8.82487 9.39550 10.91123 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037980 B = 0.004755 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.049359 B = 5887.101484 C = 6326.951132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.513 4.513 8 H 0.080 0.920 9 C -0.013 4.013 10 C 0.087 3.913 11 N -0.635 5.635 12 C 0.558 3.442 13 O -0.559 6.559 14 C -0.215 4.215 15 C -0.037 4.037 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.091 4.091 21 C 0.117 3.883 22 H 0.266 0.734 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.001 -1.781 -8.787 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.033 4.033 10 C -0.035 4.035 11 N -0.367 5.367 12 C 0.351 3.649 13 O -0.443 6.443 14 C -0.235 4.235 15 C -0.039 4.039 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.005 4.005 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.140 0.860 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.283 -2.184 -8.565 19.412 hybrid contribution 0.280 1.155 -0.221 1.209 sum 17.562 -1.028 -8.785 19.664 Atomic orbital electron populations 1.69891 1.06332 1.27280 1.49526 1.25000 0.94658 0.99086 0.93884 0.86899 0.80570 0.83725 0.78858 1.19934 1.21163 1.18702 1.20848 0.87687 0.94887 1.51698 0.90218 1.21081 0.97089 0.92887 0.92220 1.23988 0.87854 0.89441 1.02243 1.50269 1.11973 1.34458 1.40046 1.18222 0.80638 0.83128 0.82885 1.90544 1.65710 1.30936 1.57078 1.22364 0.97221 1.02883 1.01060 1.22599 0.93010 0.95458 0.92805 1.21648 1.03437 0.93422 0.96983 1.21679 0.98922 0.98288 0.96564 1.21556 0.98497 0.95925 0.99994 1.21568 1.00646 0.96401 0.96802 1.20932 0.99252 0.96985 0.95632 1.23269 0.87270 0.99136 0.90798 0.92369 0.91864 0.89533 0.92402 0.86013 0.91013 0.86010 0.92093 0.91773 0.92173 0.91977 0.91737 0.91760 0.90935 0.90048 0.91627 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.98 27.18 -169.99 -4.62 15.36 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -5.78 6.25 56.52 0.35 -5.43 16 7 C -0.51 -13.36 9.33 -34.44 -0.32 -13.68 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 9 C -0.01 -0.29 2.90 -90.85 -0.26 -0.56 16 10 C 0.09 1.72 7.34 -2.97 -0.02 1.70 16 11 N -0.64 -12.59 3.61 -179.84 -0.65 -13.24 16 12 C 0.56 10.73 7.85 -12.67 -0.10 10.63 16 13 O -0.56 -11.79 13.94 5.27 0.07 -11.71 16 14 C -0.21 -3.36 9.43 -37.80 -0.36 -3.72 16 15 C -0.04 -0.50 5.38 -100.60 -0.54 -1.04 16 16 C -0.12 -1.62 5.32 -27.26 -0.15 -1.76 16 17 C -0.12 -1.28 5.95 -26.41 -0.16 -1.43 16 18 C -0.12 -1.10 5.81 -26.77 -0.16 -1.26 16 19 C -0.12 -1.05 5.94 -26.63 -0.16 -1.21 16 20 C -0.09 -0.93 6.04 -27.48 -0.17 -1.10 16 21 C 0.12 2.38 8.39 -2.98 -0.03 2.35 16 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.06 1.42 6.57 -51.93 -0.34 1.08 16 24 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 25 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 26 H 0.12 1.74 7.82 -52.48 -0.41 1.32 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.12 2.05 4.79 -52.87 -0.25 1.80 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.70 7.92 -51.93 -0.41 0.28 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -29.11 305.30 -8.42 -37.53 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.09 Total: 1.60 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.51 Total: -9.10 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.12 Total: -38.27 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.62 Total: 15.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.11 -8.42 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855475273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.980 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds