Wall clock time and date at job start Mon Mar 30 2020 07:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99617 * 2 1 4 4 H 1.48495 * 109.47174 * 269.99885 * 3 2 1 5 5 H 1.48495 * 109.47380 * 30.00671 * 3 2 1 6 6 H 1.48507 * 109.46660 * 150.00464 * 3 2 1 7 7 C 1.37880 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99931 * 179.97438 * 7 2 1 10 10 C 1.53945 * 113.74274 * 276.67977 * 9 7 2 11 11 N 1.47583 * 86.11506 * 222.04691 * 10 9 7 12 12 C 1.34772 * 134.49366 * 204.64284 * 11 10 9 13 13 O 1.21613 * 120.00223 * 179.97438 * 12 11 10 14 14 C 1.47104 * 120.00091 * 359.97438 * 12 11 10 15 15 C 1.32996 * 119.99938 * 186.98854 * 14 12 11 16 16 C 1.51270 * 120.85146 * 12.17133 * 15 14 12 17 17 C 1.53662 * 108.31088 * 128.61655 * 16 15 14 18 18 C 1.52961 * 109.32420 * 54.85986 * 17 16 15 19 19 C 1.52955 * 109.81787 * 296.27066 * 18 17 16 20 20 C 1.51276 * 120.84616 * 192.44814 * 15 14 12 21 21 C 1.47576 * 91.01570 * 24.63607 * 11 10 9 22 22 H 0.96997 * 120.00574 * 359.97438 * 1 2 3 23 23 H 1.09004 * 112.93938 * 48.41096 * 9 7 2 24 24 H 1.08996 * 113.76801 * 336.33804 * 10 9 7 25 25 H 1.08998 * 113.77212 * 107.74587 * 10 9 7 26 26 H 1.08004 * 119.99869 * 6.98579 * 14 12 11 27 27 H 1.09000 * 109.62009 * 248.38667 * 16 15 14 28 28 H 1.08999 * 109.62195 * 8.95493 * 16 15 14 29 29 H 1.09001 * 109.62508 * 294.84001 * 17 16 15 30 30 H 1.09000 * 109.41366 * 174.75146 * 17 16 15 31 31 H 1.09000 * 109.41436 * 176.16655 * 18 17 16 32 32 H 1.08995 * 109.41391 * 56.37746 * 18 17 16 33 33 H 1.08998 * 109.48520 * 303.61923 * 19 18 17 34 34 H 1.09000 * 109.48740 * 183.57402 * 19 18 17 35 35 H 1.09001 * 109.62450 * 351.03948 * 20 15 14 36 36 H 1.08992 * 109.61996 * 111.61291 * 20 15 14 37 37 H 1.09006 * 113.77587 * 221.06115 * 21 11 10 38 38 H 1.09004 * 113.76944 * 89.65998 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1309 -1.0298 -1.4009 11 7 5.0917 -2.0712 -0.9881 12 6 6.3433 -2.4030 -1.3616 13 8 6.9085 -3.3395 -0.8300 14 6 7.0259 -1.6325 -2.4125 15 6 8.2023 -2.0415 -2.8791 16 6 8.7288 -3.4216 -2.5529 17 6 9.1325 -4.1074 -3.8674 18 6 10.1231 -3.2170 -4.6195 19 6 9.4452 -1.9030 -5.0113 20 6 9.0507 -1.1362 -3.7446 21 6 4.1315 -2.6031 -0.0017 22 1 -0.4851 0.8400 0.0004 23 1 3.9367 -0.5279 0.7497 24 1 3.4711 -1.3377 -2.2120 25 1 4.5860 -0.0536 -1.5682 26 1 6.5718 -0.7346 -2.8051 27 1 9.5969 -3.3370 -1.8991 28 1 7.9503 -4.0031 -2.0592 29 1 8.2477 -4.2679 -4.4834 30 1 9.6009 -5.0666 -3.6467 31 1 10.4626 -3.7315 -5.5184 32 1 10.9793 -3.0060 -3.9789 33 1 8.5531 -2.1156 -5.6002 34 1 10.1352 -1.2997 -5.6012 35 1 8.4790 -0.2490 -4.0168 36 1 9.9479 -0.8440 -3.1991 37 1 4.5870 -2.8831 0.9482 38 1 3.4717 -3.3731 -0.4018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855475273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:36 Heat of formation + Delta-G solvation = -15.972821 kcal Electronic energy + Delta-G solvation = -18013.109891 eV Core-core repulsion = 15241.707248 eV Total energy + Delta-G solvation = -2771.402643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24593 -39.63520 -38.25113 -34.66068 -33.65788 -31.89816 -31.41082 -28.33690 -26.92228 -26.44563 -23.86519 -22.64552 -21.53607 -20.23317 -19.22285 -19.07742 -18.03398 -16.81944 -16.62574 -16.08118 -15.86732 -15.23067 -15.12646 -14.80946 -14.69831 -14.21516 -14.07374 -13.58374 -13.48897 -13.42263 -13.23882 -12.88494 -12.65379 -12.44047 -12.00769 -11.84790 -11.78826 -11.66182 -11.48190 -11.25726 -11.18611 -10.72740 -10.32029 -9.97892 -9.50221 -8.27621 -6.35659 0.36871 1.40604 1.44157 1.53080 1.98642 2.29220 2.38347 3.03513 3.52051 3.77048 3.93897 4.04908 4.05839 4.14760 4.28512 4.34668 4.44094 4.48148 4.49478 4.54956 4.62765 4.71761 4.75234 4.80610 4.84677 4.99855 5.10900 5.15101 5.17548 5.19620 5.37764 5.39210 5.43922 5.58377 5.60284 5.73409 6.27648 6.69544 6.88936 7.20518 7.31822 8.88138 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037980 B = 0.004755 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.049359 B = 5887.101484 C = 6326.951132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.255 1.255 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.516 4.516 8 H 0.040 0.960 9 C -0.018 4.018 10 C 0.100 3.900 11 N -0.640 5.640 12 C 0.552 3.448 13 O -0.586 6.586 14 C -0.243 4.243 15 C -0.014 4.014 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.090 4.090 21 C 0.116 3.884 22 H 0.268 0.732 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.139 0.861 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.111 -0.152 -10.489 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.179 1.179 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.554 4.554 8 H 0.058 0.942 9 C -0.037 4.037 10 C -0.022 4.022 11 N -0.372 5.372 12 C 0.347 3.653 13 O -0.471 6.471 14 C -0.264 4.264 15 C -0.016 4.016 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.127 4.127 21 C -0.006 4.006 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.157 0.843 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.417 -0.570 -10.281 22.866 hybrid contribution -0.647 0.472 0.327 0.865 sum 19.770 -0.098 -9.954 22.135 Atomic orbital electron populations 1.70041 1.08377 1.28375 1.51598 1.25856 0.95324 1.03056 0.93468 0.85864 0.79619 0.78533 0.79949 1.17912 1.21574 1.16865 1.21007 0.89888 0.93476 1.51045 0.94178 1.21002 0.94430 0.94172 0.94116 1.23766 0.87617 0.90664 1.00160 1.50255 1.12311 1.34580 1.40084 1.18883 0.80089 0.82996 0.83326 1.90554 1.66129 1.32206 1.58224 1.22299 0.98369 1.03871 1.01858 1.23030 0.92146 0.95337 0.91106 1.21594 1.02447 0.93567 0.98413 1.21661 0.99384 0.98987 0.95116 1.21561 0.97973 0.95695 1.00505 1.21591 1.01033 0.96424 0.96185 1.21060 0.99229 0.96724 0.95702 1.23152 0.87647 0.98254 0.91531 0.92284 0.91600 0.89729 0.89879 0.84298 0.90588 0.89469 0.92845 0.91027 0.90517 0.91197 0.92222 0.89346 0.89700 0.88432 0.91196 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.96 21.45 0.30 -55.74 16 2 C 0.02 1.17 5.47 84.66 0.46 1.63 16 3 Si 0.94 40.36 27.18 68.60 1.86 42.22 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -9.79 6.25 99.48 0.62 -9.17 16 7 C -0.52 -27.51 9.33 25.60 0.24 -27.28 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 9 C -0.02 -0.78 2.90 -10.88 -0.03 -0.81 16 10 C 0.10 3.81 7.34 86.48 0.63 4.44 16 11 N -0.64 -24.97 3.61 -841.15 -3.03 -28.00 16 12 C 0.55 20.92 7.85 86.57 0.68 21.60 16 13 O -0.59 -24.93 13.94 -4.07 -0.06 -24.99 16 14 C -0.24 -7.18 9.43 23.43 0.22 -6.96 16 15 C -0.01 -0.35 5.38 -17.25 -0.09 -0.44 16 16 C -0.12 -3.22 5.32 30.25 0.16 -3.06 16 17 C -0.11 -2.26 5.95 30.80 0.18 -2.07 16 18 C -0.12 -1.73 5.81 30.57 0.18 -1.55 16 19 C -0.11 -1.59 5.94 30.66 0.18 -1.41 16 20 C -0.09 -1.50 6.04 30.11 0.18 -1.32 16 21 C 0.12 4.79 8.39 86.48 0.73 5.51 16 22 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 23 H 0.07 2.87 6.57 -2.38 -0.02 2.85 16 24 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 25 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 26 H 0.14 3.56 7.82 -2.91 -0.02 3.54 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.96 4.79 -17.31 -0.08 2.88 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.25 7.92 -2.39 -0.02 1.24 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.08 3.13 8.09 -2.38 -0.02 3.11 16 Total: -1.00 -64.49 305.30 3.67 -60.83 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.87 Total: 17.40 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 3.72 Total: -11.72 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.73 Total: -83.74 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -24.99 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.86 Total: 42.22 kcal Total: -64.49 3.67 -60.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855475273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.854 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds