Wall clock time and date at job start Mon Mar 30 2020 07:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48506 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46871 * 299.99741 * 3 2 1 6 6 H 1.48492 * 109.47330 * 59.99797 * 3 2 1 7 7 C 1.37877 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99623 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46982 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00019 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99710 * 180.02562 * 11 10 9 14 14 C 1.47112 * 127.36122 * 359.97438 * 13 11 10 15 15 C 1.50646 * 107.11219 * 179.97438 * 14 13 11 16 16 C 1.30564 * 110.09172 * 0.02562 * 15 14 13 17 17 C 1.46540 * 127.35777 * 180.02562 * 13 11 10 18 18 C 1.53465 * 110.50703 * 301.13369 * 17 13 11 19 19 C 1.54385 * 106.48293 * 120.17785 * 18 17 13 20 20 C 1.55014 * 104.16557 * 336.51614 * 19 18 17 21 21 C 1.53859 * 110.28606 * 59.26641 * 17 13 11 22 22 H 0.96997 * 120.00259 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47281 * 59.99399 * 9 7 2 24 24 H 1.09003 * 109.46427 * 299.99336 * 9 7 2 25 25 H 1.09006 * 109.47309 * 59.99975 * 10 9 7 26 26 H 1.08995 * 109.47567 * 299.99633 * 10 9 7 27 27 H 1.09001 * 109.90818 * 299.36675 * 14 13 11 28 28 H 1.08999 * 109.91134 * 60.62638 * 14 13 11 29 29 H 1.07999 * 124.95432 * 180.02562 * 15 14 13 30 30 H 1.07999 * 125.04962 * 180.02562 * 16 15 14 31 31 H 1.09002 * 110.06446 * 239.44904 * 18 17 13 32 32 H 1.09003 * 110.06599 * 0.90663 * 18 17 13 33 33 H 1.08996 * 110.48512 * 95.16472 * 19 18 17 34 34 H 1.08999 * 110.48225 * 217.80224 * 19 18 17 35 35 H 1.09002 * 110.71072 * 279.33304 * 20 19 18 36 36 H 1.09003 * 110.91338 * 156.07747 * 20 19 18 37 37 H 1.09000 * 110.50058 * 21.76996 * 21 17 13 38 38 H 1.08999 * 110.50374 * 144.33024 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9671 0.0021 13 7 2.1658 -6.1343 0.0018 14 6 3.6248 -6.3227 0.0014 15 6 3.8800 -7.8074 0.0031 16 6 2.7476 -8.4572 0.0038 17 6 1.6017 -7.4868 0.0019 18 6 0.7083 -7.6966 1.2320 19 6 -0.7012 -8.0303 0.6978 20 6 -0.7208 -7.4210 -0.7275 21 6 0.7163 -7.6956 -1.2388 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5566 0.8904 25 1 2.8721 -3.6043 0.8906 26 1 2.8720 -3.6044 -0.8894 27 1 4.0570 -5.8725 -0.8922 28 1 4.0577 -5.8711 0.8940 29 1 4.8572 -8.2673 0.0036 30 1 2.6496 -9.5327 0.0053 31 1 1.0864 -8.5243 1.8320 32 1 0.6756 -6.7859 1.8301 33 1 -0.8466 -9.1096 0.6532 34 1 -1.4652 -7.5670 1.3221 35 1 -0.9178 -6.3497 -0.6861 36 1 -1.4566 -7.9235 -1.3553 37 1 0.9844 -6.9874 -2.0228 38 1 0.8050 -8.7190 -1.6034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913207521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:12 Heat of formation + Delta-G solvation = -19.259974 kcal Electronic energy + Delta-G solvation = -18636.586864 eV Core-core repulsion = 15865.041680 eV Total energy + Delta-G solvation = -2771.545184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77478 -37.65858 -35.76903 -33.41391 -31.92138 -30.69923 -28.60652 -28.58703 -25.88679 -24.45943 -22.20467 -20.89119 -20.47845 -19.32235 -18.06790 -16.90866 -15.96928 -15.60380 -15.07595 -14.65313 -14.53933 -14.26584 -13.87467 -13.71430 -13.18055 -12.65777 -12.25652 -12.05197 -12.00183 -11.71691 -11.13601 -11.00717 -10.94154 -10.90449 -10.84649 -10.65708 -10.57080 -10.44837 -9.94344 -9.60807 -9.49888 -9.10302 -8.89128 -8.32168 -8.16206 -5.95443 -3.99613 1.98643 3.24044 3.25238 3.33099 3.40384 3.43745 4.42479 4.49175 4.57088 4.86541 4.87666 5.19553 5.39202 5.39706 5.47492 5.53013 5.55389 5.59129 5.71452 5.79223 5.89078 5.97289 6.01804 6.12139 6.13788 6.24811 6.26087 6.35143 6.41412 6.60929 6.73658 6.87229 6.95825 7.75679 7.87506 7.94890 8.08099 8.40046 8.82771 9.09117 9.63953 11.15568 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.005337 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.297396 B = 5245.142243 C = 5837.806904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.621 5.621 14 C 0.123 3.877 15 C -0.169 4.169 16 C -0.153 4.153 17 C 0.181 3.819 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.117 4.117 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -18.523 0.000 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.163 4.163 11 C 0.326 3.674 12 O -0.393 6.393 13 N -0.358 5.358 14 C 0.000 4.000 15 C -0.187 4.187 16 C -0.171 4.171 17 C 0.095 3.905 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.172 4.172 21 C -0.156 4.156 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.422 -18.250 0.005 19.039 hybrid contribution 0.685 0.780 0.011 1.038 sum 6.107 -17.470 0.015 18.507 Atomic orbital electron populations 1.70007 1.06046 1.26453 1.50345 1.25018 0.94811 0.99202 0.95318 0.86546 0.80020 0.83878 0.77586 1.19754 1.21018 1.21013 1.21254 0.92949 0.91005 1.51201 0.92606 1.18906 0.93150 0.89304 0.98619 1.21861 1.00653 0.91526 1.02300 1.21164 0.88157 0.83696 0.74432 1.90564 1.13868 1.86349 1.48527 1.48616 1.06521 1.04952 1.75729 1.20788 0.82473 0.94475 1.02248 1.23353 0.98994 0.94997 1.01339 1.23170 0.93962 0.99130 1.00879 1.20104 0.92692 0.81781 0.95896 1.22368 0.94836 1.01755 0.96655 1.22264 0.96447 0.99310 0.97230 1.22804 0.95161 1.04292 0.94900 1.22555 0.95637 1.00849 0.96524 0.93018 0.95796 0.95791 0.90429 0.90425 0.90444 0.90454 0.83993 0.84194 0.91874 0.90933 0.92520 0.91751 0.87767 0.92725 0.91521 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.12 -2.57 4.95 -27.88 -0.14 -2.71 16 11 C 0.53 10.58 7.22 -10.98 -0.08 10.50 16 12 O -0.52 -11.85 12.24 5.56 0.07 -11.78 16 13 N -0.62 -9.75 2.76 -160.49 -0.44 -10.19 16 14 C 0.12 1.49 6.66 -4.89 -0.03 1.46 16 15 C -0.17 -1.62 10.88 -35.93 -0.39 -2.01 16 16 C -0.15 -1.59 9.11 -36.17 -0.33 -1.92 16 17 C 0.18 2.48 0.95 -132.53 -0.13 2.35 16 18 C -0.12 -1.63 5.74 -25.76 -0.15 -1.78 16 19 C -0.11 -1.54 6.85 -24.94 -0.17 -1.71 16 20 C -0.13 -2.01 6.36 -24.62 -0.16 -2.16 16 21 C -0.12 -1.63 5.71 -25.24 -0.14 -1.77 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.06 0.74 7.70 -51.93 -0.40 0.34 16 32 H 0.07 1.21 7.35 -51.93 -0.38 0.82 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.96 5.32 -51.93 -0.28 1.68 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 38 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -32.64 304.03 -8.39 -41.03 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.07 Total: -0.99 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -2.24 Total: -12.59 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.29 Total: -36.99 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.64 -8.39 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913207521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.769 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds