Wall clock time and date at job start Mon Mar 30 2020 07:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48506 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46871 * 299.99741 * 3 2 1 6 6 H 1.48492 * 109.47330 * 59.99797 * 3 2 1 7 7 C 1.37877 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99623 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46982 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00019 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99710 * 180.02562 * 11 10 9 14 14 C 1.47112 * 127.36122 * 359.97438 * 13 11 10 15 15 C 1.50646 * 107.11219 * 179.97438 * 14 13 11 16 16 C 1.30564 * 110.09172 * 0.02562 * 15 14 13 17 17 C 1.46540 * 127.35777 * 180.02562 * 13 11 10 18 18 C 1.53465 * 110.50703 * 301.13369 * 17 13 11 19 19 C 1.54385 * 106.48293 * 120.17785 * 18 17 13 20 20 C 1.55014 * 104.16557 * 336.51614 * 19 18 17 21 21 C 1.53859 * 110.28606 * 59.26641 * 17 13 11 22 22 H 0.96997 * 120.00259 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47281 * 59.99399 * 9 7 2 24 24 H 1.09003 * 109.46427 * 299.99336 * 9 7 2 25 25 H 1.09006 * 109.47309 * 59.99975 * 10 9 7 26 26 H 1.08995 * 109.47567 * 299.99633 * 10 9 7 27 27 H 1.09001 * 109.90818 * 299.36675 * 14 13 11 28 28 H 1.08999 * 109.91134 * 60.62638 * 14 13 11 29 29 H 1.07999 * 124.95432 * 180.02562 * 15 14 13 30 30 H 1.07999 * 125.04962 * 180.02562 * 16 15 14 31 31 H 1.09002 * 110.06446 * 239.44904 * 18 17 13 32 32 H 1.09003 * 110.06599 * 0.90663 * 18 17 13 33 33 H 1.08996 * 110.48512 * 95.16472 * 19 18 17 34 34 H 1.08999 * 110.48225 * 217.80224 * 19 18 17 35 35 H 1.09002 * 110.71072 * 279.33304 * 20 19 18 36 36 H 1.09003 * 110.91338 * 156.07747 * 20 19 18 37 37 H 1.09000 * 110.50058 * 21.76996 * 21 17 13 38 38 H 1.08999 * 110.50374 * 144.33024 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9671 0.0021 13 7 2.1658 -6.1343 0.0018 14 6 3.6248 -6.3227 0.0014 15 6 3.8800 -7.8074 0.0031 16 6 2.7476 -8.4572 0.0038 17 6 1.6017 -7.4868 0.0019 18 6 0.7083 -7.6966 1.2320 19 6 -0.7012 -8.0303 0.6978 20 6 -0.7208 -7.4210 -0.7275 21 6 0.7163 -7.6956 -1.2388 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5566 0.8904 25 1 2.8721 -3.6043 0.8906 26 1 2.8720 -3.6044 -0.8894 27 1 4.0570 -5.8725 -0.8922 28 1 4.0577 -5.8711 0.8940 29 1 4.8572 -8.2673 0.0036 30 1 2.6496 -9.5327 0.0053 31 1 1.0864 -8.5243 1.8320 32 1 0.6756 -6.7859 1.8301 33 1 -0.8466 -9.1096 0.6532 34 1 -1.4652 -7.5670 1.3221 35 1 -0.9178 -6.3497 -0.6861 36 1 -1.4566 -7.9235 -1.3553 37 1 0.9844 -6.9874 -2.0228 38 1 0.8050 -8.7190 -1.6034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913207521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:11 Heat of formation + Delta-G solvation = -39.134978 kcal Electronic energy + Delta-G solvation = -18637.448709 eV Core-core repulsion = 15865.041680 eV Total energy + Delta-G solvation = -2772.407029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94936 -39.13608 -36.85045 -35.55126 -33.34267 -32.47954 -29.71709 -29.65040 -27.81759 -25.68957 -23.92787 -22.19234 -21.68827 -20.41522 -19.47426 -18.65584 -17.64592 -16.92164 -16.50306 -16.33990 -15.91410 -15.48046 -15.08690 -15.04233 -14.41112 -14.26777 -13.89667 -13.68686 -13.18001 -12.98011 -12.87371 -12.77836 -12.46214 -12.11338 -12.00328 -11.97854 -11.95304 -11.75850 -11.62295 -11.52638 -11.27458 -10.60716 -10.56046 -10.38267 -9.31743 -8.19941 -6.34282 1.24247 1.40742 1.42461 1.55780 1.70729 1.97963 2.41863 3.13118 3.45564 3.65715 3.75168 3.86562 4.03332 4.17128 4.42224 4.44509 4.51888 4.56214 4.58738 4.62910 4.69695 4.76677 4.85697 4.90420 4.97138 5.00769 5.03543 5.21444 5.26339 5.38224 5.46297 5.56223 5.60008 5.69677 5.82452 5.92296 6.15611 6.58299 6.84423 7.32787 7.36751 8.93062 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.005337 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.297396 B = 5245.142243 C = 5837.806904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.047 3.953 10 C -0.111 4.111 11 C 0.529 3.471 12 O -0.563 6.563 13 N -0.619 5.619 14 C 0.106 3.894 15 C -0.150 4.150 16 C -0.156 4.156 17 C 0.169 3.831 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.141 4.141 21 C -0.113 4.113 22 H 0.263 0.737 23 H -0.018 1.018 24 H -0.018 1.018 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.183 0.817 30 H 0.176 0.824 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 -20.480 -0.021 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.009 3.991 10 C -0.150 4.150 11 C 0.320 3.680 12 O -0.441 6.441 13 N -0.354 5.354 14 C -0.016 4.016 15 C -0.168 4.168 16 C -0.174 4.174 17 C 0.084 3.916 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.178 4.178 21 C -0.151 4.151 22 H 0.072 0.928 23 H 0.001 0.999 24 H 0.000 1.000 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.200 0.800 30 H 0.193 0.807 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.708 -20.253 -0.016 22.046 hybrid contribution -0.359 1.368 0.012 1.414 sum 8.349 -18.885 -0.003 20.649 Atomic orbital electron populations 1.70186 1.08342 1.27786 1.51480 1.26140 0.95719 1.03955 0.94536 0.85259 0.79282 0.77987 0.77630 1.17610 1.20528 1.20523 1.21719 0.93919 0.91603 1.50830 0.90771 1.18655 0.93541 0.92272 0.94634 1.21580 0.99241 0.90190 1.04026 1.20823 0.87578 0.84809 0.74818 1.90580 1.15591 1.87175 1.50775 1.48466 1.08603 1.04765 1.73539 1.21183 0.79880 0.97276 1.03219 1.23579 1.00586 0.92741 0.99908 1.23269 0.92132 0.99985 1.02005 1.20420 0.94330 0.81397 0.95447 1.22369 0.95450 1.00959 0.96769 1.22267 0.95914 1.01025 0.95619 1.22740 0.96792 1.01581 0.96698 1.22553 0.94604 1.01977 0.96002 0.92821 0.99943 0.99970 0.88557 0.88539 0.89515 0.89533 0.80034 0.80687 0.88907 0.94821 0.89050 0.93453 0.92563 0.91217 0.94059 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.43 13.29 21.45 0.28 -60.15 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 4 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.05 2.68 4.26 29.85 0.13 2.80 16 10 C -0.11 -4.74 4.95 29.85 0.15 -4.59 16 11 C 0.53 21.97 7.22 87.66 0.63 22.61 16 12 O -0.56 -28.01 12.24 -3.02 -0.04 -28.05 16 13 N -0.62 -19.22 2.76 -780.06 -2.15 -21.38 16 14 C 0.11 2.29 6.66 85.50 0.57 2.86 16 15 C -0.15 -2.19 10.88 26.08 0.28 -1.91 16 16 C -0.16 -2.55 9.11 25.92 0.24 -2.31 16 17 C 0.17 4.36 0.95 3.12 0.00 4.37 16 18 C -0.12 -3.16 5.74 31.22 0.18 -2.98 16 19 C -0.11 -2.93 6.85 31.75 0.22 -2.71 16 20 C -0.14 -4.33 6.36 31.96 0.20 -4.13 16 21 C -0.11 -3.04 5.71 31.56 0.18 -2.86 16 22 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 23 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 24 H -0.02 -1.18 8.10 -2.39 -0.02 -1.19 16 25 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 26 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 30 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.09 1.91 7.70 -2.39 -0.02 1.89 16 32 H 0.03 1.16 7.35 -2.39 -0.02 1.14 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 2.31 5.32 -2.39 -0.01 2.30 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.30 8.04 -2.39 -0.02 1.28 16 38 H 0.10 1.99 7.88 -2.39 -0.02 1.97 16 Total: -1.00 -77.29 304.03 4.62 -72.68 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.02 Total: 10.12 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.48 Total: -20.15 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.87 Total: -81.52 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.04 Total: -28.05 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -77.29 4.62 -72.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913207521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.541 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds